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Organism related
Word Map for Organism Thermococcus kodakarensis
- Thermococcus kodakarensis
- archaeon
-
hyperthermophilic
- polymerases
- furiosus
- thermococcales
- exonuclease
-
propeptide
- sulfolobus
-
phosphopantothenate
-
hyperthermostable
-
autoprocessing
- horikoshii
-
euryarchaeon
- rnaps
TaxTree of Organism Thermococcus kodakarensis
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EC NUMBER 
COMMENTARY 
-
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(5R)-carbapenem carboxylate biosynthesis
(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7216
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
(S)-propane-1,2-diol degradation
-
-
PWY-7013
1,3-propanediol biosynthesis (engineered)
-
-
PWY-7385
1,5-anhydrofructose degradation
-
-
PWY-6992
1-butanol autotrophic biosynthesis (engineered)
-
-
PWY-6886
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)
-
-
PWY-4661
1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium)
-
-
PWY-6372
2'-deoxymugineic acid phytosiderophore biosynthesis
-
-
PWY-5912
2,2'-dihydroxybiphenyl degradation
-
-
PWY-7009
2,3-dihydroxybenzoate degradation
-
-
PWY-7480
2-deoxy-alpha-D-ribose 1-phosphate degradation
-
-
PWY-7180
2-deoxy-D-ribose degradation I
-
-
PWY-8060
2-deoxy-D-ribose degradation II
-
-
PWY-8058
2-methylpropene degradation
-
-
PWY-7778
2-oxobutanoate degradation II
-
-
2OXOBUTYRATECAT-PWY
3-chlorocatechol degradation III (meta pathway)
-
-
PWY-6214
3-hydroxypropanoate cycle
-
-
PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
-
-
PWY-5789
3-methylbutanol biosynthesis (engineered)
-
-
PWY-6871
4-amino-3-hydroxybenzoate degradation
-
-
PWY-7006
4-aminobutanoate degradation V
-
-
PWY-5022
4-chloronitrobenzene degradation
-
-
PWY-5645
4-hydroxy-2(1H)-quinolone biosynthesis
-
-
PWY-6661
4-oxopentanoate degradation
-
-
PWY-7948
5'-deoxyadenosine degradation I
-
-
PWY-8130
6-hydroxymethyl-dihydropterin diphosphate biosynthesis
-
-
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
-
-
PWY-6147
6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium)
-
-
PWY-7852
7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
-
-
PWY-7286
8-amino-7-oxononanoate biosynthesis I
-
-
PWY-6519
acetaldehyde biosynthesis I
-
-
PWY-6333
acetate and ATP formation from acetyl-CoA II
-
-
PWY-5535
acetate and ATP formation from acetyl-CoA III
-
-
PWY-8328
acetate conversion to acetyl-CoA
-
-
PWY0-1313
acetoacetate degradation (to acetyl CoA)
-
-
ACETOACETATE-DEG-PWY
acetyl-CoA fermentation to butanoate
-
-
PWY-5676
acetylene degradation (anaerobic)
-
-
P161-PWY
acridone alkaloid biosynthesis
-
-
PWY-5958
acrylonitrile degradation I
-
-
PWY-7308
adenine and adenosine salvage VI
-
-
PWY-6619
adenosine ribonucleotides de novo biosynthesis
-
-
PWY-7219
adipate biosynthesis
-
-
PWY-8347
adipate degradation
-
-
PWY-8354
adlupulone and adhumulone biosynthesis
-
-
PWY-7857
alanine racemization
-
-
PWY-8072
all-trans-farnesol biosynthesis
-
-
PWY-6859
alpha-tomatine degradation
-
-
PWY18C3-5
aminopropanol phosphate biosynthesis II
-
-
PWY-7378
ammonia assimilation cycle I
-
-
PWY-6963
ammonia assimilation cycle II
-
-
PWY-6964
ammonia assimilation cycle III
-
-
AMMASSIM-PWY
anaerobic energy metabolism (invertebrates, cytosol)
-
-
PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
-
-
PWY-7384
ansatrienin biosynthesis
-
-
PWY-8040
archaeosine biosynthesis I
-
-
PWY-6711
archaeosine biosynthesis II
-
-
PWY-7923
arginine dependent acid resistance
-
-
PWY0-1299
bergamotene biosynthesis II
-
-
PWY-6244
beta-(1,4)-mannan degradation
-
-
PWY-7456
beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
-
-
PWY-7586
beta-alanine biosynthesis III
-
-
PWY-5155
Bifidobacterium shunt
-
-
P124-PWY
bis(guanylyl molybdopterin) cofactor sulfurylation
-
-
PWY-8164
bisabolene biosynthesis (engineered)
-
-
PWY-7102
brassicicene C biosynthesis
-
-
PWY-7517
butanol and isobutanol biosynthesis (engineered)
-
-
PWY-7396
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
-
-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
Calvin-Benson-Bassham cycle
-
-
CALVIN-PWY
catechol degradation to 2-hydroxypentadienoate II
-
-
PWY-5419
CDP-6-deoxy-D-gulose biosynthesis
-
-
PWY-8139
cellulose degradation II (fungi)
-
-
PWY-6788
chitin biosynthesis
-
-
PWY-6981
chitin deacetylation
-
-
PWY-7118
chitin degradation I (archaea)
-
-
PWY-6855
chitin degradation II (Vibrio)
-
-
PWY-6902
chitin degradation III (Serratia)
-
-
PWY-7822
chitin derivatives degradation
-
-
PWY-6906
cichoriin interconversion
-
-
PWY-7057
cis-geranyl-CoA degradation
-
-
PWY-6672
CMP phosphorylation
-
-
PWY-7205
CMP-legionaminate biosynthesis I
-
-
PWY-6749
CO2 fixation into oxaloacetate (anaplerotic)
-
-
PWYQT-4429
coenzyme A biosynthesis I (bacteria)
-
-
COA-PWY
coenzyme A biosynthesis II (eukaryotic)
-
-
PWY-7851
coenzyme A biosynthesis III (archaea)
-
-
PWY-8342
coenzyme B biosynthesis
-
-
P241-PWY
colupulone and cohumulone biosynthesis
-
-
PWY-5133
conversion of succinate to propanoate
-
-
PWY0-43
coumarin biosynthesis (via 2-coumarate)
-
-
PWY-5176
creatinine degradation I
-
-
CRNFORCAT-PWY
creatinine degradation II
-
-
PWY-4722
crotonate fermentation (to acetate and cyclohexane carboxylate)
-
-
PWY-7401
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
-
-
PWY-7854
cytidylyl molybdenum cofactor sulfurylation
-
-
PWY-8165
cytochrome c biogenesis (system I type)
-
-
PWY-8147
D-galactose degradation I (Leloir pathway)
-
-
PWY-6317
D-myo-inositol (1,4,5)-trisphosphate degradation
-
-
PWY-6363
D-sorbitol biosynthesis I
-
-
PWY-5054
daphnin interconversion
-
-
PWY-7056
degradation of aromatic, nitrogen containing compounds
-
-
di-myo-inositol phosphate biosynthesis
-
-
PWY-6664
diethylphosphate degradation
-
-
PWY-5491
dolichol and dolichyl phosphate biosynthesis
drosopterin and aurodrosopterin biosynthesis
-
-
PWY-7442
dTDP-beta-L-rhamnose biosynthesis
-
-
DTDPRHAMSYN-PWY
dTMP de novo biosynthesis (mitochondrial)
-
-
PWY66-385
Entner-Doudoroff pathway I
-
-
PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
-
-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
-
-
PWY-2221
erythro-tetrahydrobiopterin biosynthesis I
-
-
PWY-5663
ethanol degradation I
-
-
ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
-
-
PWY66-21
ethanol degradation III
-
-
PWY66-161
ethanol degradation IV
-
-
PWY66-162
ethanolamine utilization
-
-
PWY0-1477
ethene biosynthesis I (plants)
-
-
ETHYL-PWY
ethene biosynthesis IV (engineered)
-
-
PWY-7126
ethene biosynthesis V (engineered)
-
-
PWY-7124
ethylmalonyl-CoA pathway
-
-
PWY-5741
firefly bioluminescence
-
-
PWY-7913
folate polyglutamylation
folate transformations I
-
-
PWY-2201
folate transformations II (plants)
-
-
PWY-3841
folate transformations III (E. coli)
-
-
1CMET2-PWY
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
-
-
PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
-
-
P185-PWY
formaldehyde oxidation I
-
-
RUMP-PWY
fructose 2,6-bisphosphate biosynthesis
-
-
PWY66-423
fusicoccin A biosynthesis
-
-
PWY-6659
GABA shunt I
-
-
GLUDEG-I-PWY
GABA shunt II
-
-
PWY-8346
GDP-alpha-D-glucose biosynthesis
-
-
PWY-5661
GDP-mannose biosynthesis
-
-
PWY-5659
geranylgeranyl diphosphate biosynthesis
-
-
PWY-5120
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
-
PWY-6142
gluconeogenesis III
-
-
PWY66-399
glucose and glucose-1-phosphate degradation
-
-
GLUCOSE1PMETAB-PWY
glucosylglycerol biosynthesis
-
-
PWY-7902
glutaminyl-tRNAgln biosynthesis via transamidation
-
-
PWY-5921
glutaryl-CoA degradation
-
-
PWY-5177
glycerol degradation I
-
-
PWY-4261
glycerol degradation to butanol
-
-
PWY-7003
glycine betaine degradation I
-
-
PWY-3661
glycine betaine degradation II (mammalian)
-
-
PWY-3661-1
glycine betaine degradation III
-
-
PWY-8325
glycine biosynthesis I
-
-
GLYSYN-PWY
glycine biosynthesis II
-
-
GLYCINE-SYN2-PWY
glycine biosynthesis IV
-
-
GLYSYN-THR-PWY
glycine cleavage
-
-
GLYCLEAV-PWY
glycogen biosynthesis I (from ADP-D-Glucose)
-
-
GLYCOGENSYNTH-PWY
glycogen biosynthesis II (from UDP-D-Glucose)
-
-
PWY-5067
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
-
-
PWY-7900
glycogen degradation I
-
-
GLYCOCAT-PWY
glycogen degradation II
-
-
PWY-5941
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
-
-
PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
glycolysis V (Pyrococcus)
-
-
P341-PWY
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
guanosine ribonucleotides de novo biosynthesis
-
-
PWY-7221
heterolactic fermentation
-
-
P122-PWY
hydrogen oxidation I (aerobic)
-
-
P283-PWY
hydrogen oxidation II (aerobic, NAD)
-
-
PWY-5382
hydrogen oxidation III (anaerobic, NADP)
-
-
PWY-6512
hydrogen production II
-
-
PWY-6758
hydrogen production III
-
-
PWY-6759
hydrogen production IV
-
-
PWY-6765
hydrogen production VI
-
-
PWY-6780
hydrogen production VIII
-
-
PWY-6785
incomplete reductive TCA cycle
-
-
P42-PWY
indole-3-acetate biosynthesis II
-
-
PWY-581
indole-3-acetate biosynthesis III (bacteria)
-
-
PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
-
-
PWY-5025
inosine-5'-phosphate biosynthesis I
-
-
PWY-6123
inosine-5'-phosphate biosynthesis II
-
-
PWY-6124
inosine-5'-phosphate biosynthesis III
-
-
PWY-7234
isopenicillin N biosynthesis
-
-
PWY-5629
isoprene biosynthesis II (engineered)
-
-
PWY-7391
isopropanol biosynthesis (engineered)
-
-
PWY-6876
itaconate degradation
-
-
PWY-5749
ketogenesis
-
-
PWY66-367
ketolysis
-
-
PWY66-368
L-alanine biosynthesis II
-
-
ALANINE-SYN2-PWY
L-alanine biosynthesis III
-
-
PWY0-1021
L-alanine degradation I
-
-
ALADEG-PWY
L-alanine degradation II (to D-lactate)
-
-
ALACAT2-PWY
L-alanine degradation III
-
-
ALANINE-DEG3-PWY
L-alanine degradation V (oxidative Stickland reaction)
-
-
PWY-8189
L-alanine degradation VI (reductive Stickland reaction)
-
-
PWY-8188
L-arginine biosynthesis I (via L-ornithine)
-
-
ARGSYN-PWY
L-arginine biosynthesis II (acetyl cycle)
-
-
ARGSYNBSUB-PWY
L-arginine biosynthesis IV (archaea)
-
-
PWY-7400
L-arginine degradation III (arginine decarboxylase/agmatinase pathway)
-
-
PWY0-823
L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)
-
-
ARGDEG-III-PWY
L-arginine degradation X (arginine monooxygenase pathway)
-
-
ARGDEG-V-PWY
L-arginine degradation XIII (reductive Stickland reaction)
-
-
PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
-
-
PWY-6344
L-asparagine biosynthesis I
-
-
ASPARAGINE-BIOSYNTHESIS
L-asparagine biosynthesis III (tRNA-dependent)
-
-
PWY490-4
L-asparagine degradation I
-
-
ASPARAGINE-DEG1-PWY
L-asparagine degradation III (mammalian)
-
-
ASPARAGINE-DEG1-PWY-1
L-aspartate degradation II (aerobic)
-
-
PWY-8291
L-aspartate degradation III (anaerobic)
-
-
PWY-8294
L-carnitine degradation II
-
-
PWY-3641
L-citrulline biosynthesis
-
-
CITRULBIO-PWY
L-citrulline degradation
-
-
CITRULLINE-DEG-PWY
L-cysteine biosynthesis VIII (Thermococcus kodakarensis)
-
-
PWY-8009
L-glutamate biosynthesis I
-
-
GLUTSYN-PWY
L-glutamate biosynthesis II
-
-
GLUTAMATE-SYN2-PWY
L-glutamate biosynthesis III
-
-
GLUTSYNIII-PWY
L-glutamate degradation I
-
-
GLUTAMATE-DEG1-PWY
L-glutamate degradation IX (via 4-aminobutanoate)
-
-
PWY0-1305
L-glutamate degradation V (via hydroxyglutarate)
-
-
P162-PWY
L-glutamate degradation VII (to butanoate)
-
-
GLUDEG-II-PWY
L-glutamate degradation X
-
-
PWY-5766
L-glutamate degradation XI (reductive Stickland reaction)
-
-
PWY-8190
L-glutamine biosynthesis I
-
-
GLNSYN-PWY
L-glutamine degradation I
-
-
GLUTAMINDEG-PWY
L-glutamine degradation II
-
-
GLUTAMINEFUM-PWY
L-histidine degradation V
-
-
PWY-5031
L-isoleucine biosynthesis IV
-
-
PWY-5104
L-isoleucine biosynthesis V
-
-
PWY-5108
L-isoleucine degradation II
-
-
PWY-5078
L-isoleucine degradation III (oxidative Stickland reaction)
-
-
PWY-8184
L-leucine degradation III
-
-
PWY-5076
L-leucine degradation V (oxidative Stickland reaction)
-
-
PWY-8185
L-lysine biosynthesis IV
-
-
LYSINE-AMINOAD-PWY
L-lysine biosynthesis V
-
-
PWY-3081
L-lysine degradation V
-
-
PWY-5283
L-lysine fermentation to acetate and butanoate
-
-
P163-PWY
L-malate degradation II
-
-
PWY-7686
L-methionine degradation I (to L-homocysteine)
-
-
METHIONINE-DEG1-PWY
L-methionine degradation III
-
-
PWY-5082
L-Ndelta-acetylornithine biosynthesis
-
-
PWY-6922
L-ornithine biosynthesis II
-
-
ARGININE-SYN4-PWY
L-phenylalanine degradation III
-
-
PWY-5079
L-proline degradation I
-
-
PROUT-PWY
L-threonine degradation II
-
-
THREONINE-DEG2-PWY
L-threonine degradation III (to methylglyoxal)
-
-
THRDLCTCAT-PWY
L-threonine degradation IV
-
-
PWY-5436
L-tryptophan biosynthesis
-
-
TRPSYN-PWY
L-tryptophan degradation V (side chain pathway)
-
-
PWY-3162
L-tyrosine degradation III
-
-
PWY3O-4108
L-valine degradation II
-
-
PWY-5057
L-valine degradation III (oxidative Stickland reaction)
-
-
PWY-8183
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales)
-
-
PWY-8377
linamarin degradation
-
-
PWY-3121
linustatin bioactivation
-
-
PWY-7091
lipid IVA biosynthesis (2,3-diamino-2,3-dideoxy-D-glucopyranose-containing)
-
-
PWY2B4Q-4
lipid IVA biosynthesis (E. coli)
-
-
NAGLIPASYN-PWY
lipid IVA biosynthesis (generic)
-
-
PWY-8283
lipid IVA biosynthesis (H. pylori)
-
-
PWYI-14
lipid IVA biosynthesis (P. gingivalis)
-
-
PWY-8245
lipid IVA biosynthesis (P. putida)
-
-
PWY-8073
lipid IVA biosynthesis (Vibrio cholerae serogroup O1 El Tor)
-
-
PWY2G6Z-2
lipoate biosynthesis and incorporation I
-
-
PWY0-501
lipoate biosynthesis and incorporation II
-
-
PWY0-1275
lipoate biosynthesis and incorporation III (Bacillus)
-
-
PWY-6987
lipoate biosynthesis and incorporation IV (yeast)
-
-
PWY-7382
lipoate biosynthesis and incorporation V (mammals)
-
-
PWY0-501-1
lotaustralin degradation
-
-
PWY-6002
lupulone and humulone biosynthesis
-
-
PWY-5132
Methanobacterium thermoautotrophicum biosynthetic metabolism
-
-
PWY-6146
methanogenesis from H2 and CO2
-
-
METHANOGENESIS-PWY
methanol oxidation to formaldehyde IV
-
-
PWY-5506
methoxylated aromatic compound degradation II
-
-
PWY-8305
methyl indole-3-acetate interconversion
-
-
PWY-6303
methyl phomopsenoate biosynthesis
-
-
PWY-7721
methyl tert-butyl ether degradation
-
-
PWY-7779
methyl-coenzyme M oxidation to CO2
-
-
PWY-5209
methylaspartate cycle
methylerythritol phosphate pathway I
-
-
NONMEVIPP-PWY
methylerythritol phosphate pathway II
-
-
PWY-7560
methylsalicylate degradation
-
-
PWY18C3-24
methylwyosine biosynthesis
-
-
PWY-7285
mevalonate pathway I (eukaryotes and bacteria)
-
-
PWY-922
mevalonate pathway II (haloarchaea)
-
-
PWY-6174
mevalonate pathway III (Thermoplasma)
-
-
PWY-7524
mevalonate pathway IV (archaea)
-
-
PWY-8125
mixed acid fermentation
-
-
FERMENTATION-PWY
molybdopterin biosynthesis
-
-
PWY-6823
mono-trans, poly-cis decaprenyl phosphate biosynthesis
-
-
PWY-6383
mRNA capping I
-
-
PWY-7375
mycothiol biosynthesis
-
-
PWY1G-0
myo-inositol biosynthesis
N-acetylglucosamine degradation I
-
-
GLUAMCAT-PWY
NAD biosynthesis from nicotinamide
-
-
NAD-BIOSYNTHESIS-III
NAD de novo biosynthesis I
-
-
PYRIDNUCSYN-PWY
NAD de novo biosynthesis III
-
-
PWY-8352
NAD de novo biosynthesis IV (anaerobic)
-
-
PWY-8277
NAD salvage pathway II (PNC IV cycle)
-
-
PWY-7761
NAD salvage pathway IV (from nicotinamide riboside)
-
-
PWY3O-4106
neolinustatin bioactivation
-
-
PWY-7092
nicotine biosynthesis
-
-
PWY-5316
nitrogen remobilization from senescing leaves
-
-
PWY-6549
nocardicin A biosynthesis
-
-
PWY-7797
noradrenaline and adrenaline degradation
-
-
PWY-6342
nucleoside and nucleotide degradation (archaea)
-
-
PWY-5532
oleandomycin activation/inactivation
-
-
PWY-6972
oleate beta-oxidation
-
-
PWY0-1337
ophiobolin F biosynthesis
-
-
PWY-7720
orthanilate degradation
-
-
2ASDEG-PWY
partial TCA cycle (obligate autotrophs)
-
-
PWY-5913
paspaline biosynthesis
-
-
PWY-7492
pentose phosphate pathway (non-oxidative branch) I
-
-
NONOXIPENT-PWY
pentose phosphate pathway (non-oxidative branch) II
-
-
PWY-8178
pentose phosphate pathway (oxidative branch) II
-
-
PWY-7796
periplasmic disulfide bond formation
-
-
PWY0-1599
phenylethanol biosynthesis
-
-
PWY-5751
phosphatidylinositol biosynthesis I (bacteria)
-
-
PWY-6580
phospholipid remodeling (phosphatidylethanolamine, yeast)
-
-
PWY-7409
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
phosphopantothenate biosynthesis II
-
-
PWY-3961
phosphopantothenate biosynthesis III (archaea)
-
-
PWY-6654
photorespiration I
-
-
PWY-181
photorespiration II
-
-
PWY-8362
photorespiration III
-
-
PWY-8363
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7218
phytate degradation I
-
-
PWY-4702
phytol degradation
-
-
PWY66-389
plaunotol biosynthesis
-
-
PWY-6691
polyhydroxybutanoate biosynthesis
-
-
PWY1-3
polyphosphate metabolism
-
-
PWY-8138
preQ0 biosynthesis
-
-
PWY-6703
proline to cytochrome bo oxidase electron transfer
-
-
PWY0-1544
propanoyl CoA degradation I
-
-
PROPIONMET-PWY
protein N-glycosylation initial phase (eukaryotic)
-
-
MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
protocatechuate degradation III (para-cleavage pathway)
-
-
PWY-6336
purine nucleobases degradation II (anaerobic)
-
-
PWY-5497
purine ribonucleosides degradation
-
-
PWY0-1296
putrescine biosynthesis I
-
-
PWY-40
putrescine biosynthesis II
-
-
PWY-43
pyridoxal 5'-phosphate biosynthesis II
-
-
PWY-6466
pyrimidine deoxyribonucleosides degradation
-
-
PWY-7181
pyrimidine deoxyribonucleosides salvage
-
-
PWY-7199
pyrimidine deoxyribonucleotide phosphorylation
-
-
PWY-7197
pyrimidine deoxyribonucleotides biosynthesis from CTP
-
-
PWY-7210
pyrimidine ribonucleosides degradation
-
-
PWY0-1295
pyrimidine ribonucleosides salvage I
-
-
PWY-7193
pyruvate decarboxylation to acetyl CoA III
-
-
PWY-8275
pyruvate fermentation to (S)-lactate
-
-
PWY-5481
pyruvate fermentation to acetate I
-
-
P142-PWY
pyruvate fermentation to acetate III
-
-
PWY-5483
pyruvate fermentation to acetate IV
-
-
PWY-5485
pyruvate fermentation to acetate V
-
-
PWY-5537
pyruvate fermentation to acetate VI
-
-
PWY-5538
pyruvate fermentation to acetate VII
-
-
PWY-5600
pyruvate fermentation to acetone
-
-
PWY-6588
pyruvate fermentation to butanoate
-
-
CENTFERM-PWY
pyruvate fermentation to butanol I
-
-
PWY-6583
pyruvate fermentation to butanol II (engineered)
-
-
PWY-6883
pyruvate fermentation to ethanol I
-
-
PWY-5480
pyruvate fermentation to ethanol II
-
-
PWY-5486
pyruvate fermentation to ethanol III
-
-
PWY-6587
pyruvate fermentation to hexanol (engineered)
-
-
PWY-6863
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
pyruvate fermentation to propanoate I
-
-
P108-PWY
queuosine biosynthesis I (de novo)
-
-
PWY-6700
queuosine biosynthesis III (queuosine salvage)
-
-
PWY-8106
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive acetyl coenzyme A pathway II (autotrophic methanogens)
-
-
PWY-7784
reductive glycine pathway of autotrophic CO2 fixation
-
-
PWY-8303
reductive monocarboxylic acid cycle
-
-
PWY-5493
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
retinol biosynthesis
-
-
PWY-6857
ribose phosphorylation
-
-
RIBOKIN-PWY
rubber biosynthesis
-
-
PWY-5815
Rubisco shunt
-
-
PWY-5723
S-adenosyl-L-methionine biosynthesis
-
-
SAM-PWY
S-adenosyl-L-methionine salvage I
-
-
PWY-6151
S-adenosyl-L-methionine salvage II
-
-
PWY-5041
S-methyl-5'-thioadenosine degradation II
-
-
PWY-6756
salidroside biosynthesis
-
-
PWY-6802
sedoheptulose bisphosphate bypass
-
-
PWY0-1517
serine racemization
-
-
PWY-8140
serotonin degradation
-
-
PWY-6313
spermidine biosynthesis I
-
-
BSUBPOLYAMSYN-PWY
spermidine biosynthesis III
-
-
PWY-6834
staphyloferrin A biosynthesis
-
-
PWY-7990
staphylopine biosynthesis
-
-
PWY-8007
starch biosynthesis
-
-
PWY-622
starch degradation II
-
-
PWY-6724
starch degradation III
-
-
PWY-6731
starch degradation IV
-
-
PWY-6735
starch degradation V
-
-
PWY-6737
stellatic acid biosynthesis
-
-
PWY-7736
streptomycin biosynthesis
-
-
PWY-5940
sucrose biosynthesis I (from photosynthesis)
-
-
SUCSYN-PWY
sucrose biosynthesis II
-
-
PWY-7238
sucrose biosynthesis III
-
-
PWY-7347
sucrose degradation II (sucrose synthase)
-
-
PWY-3801
sucrose degradation III (sucrose invertase)
-
-
PWY-621
sucrose degradation IV (sucrose phosphorylase)
-
-
PWY-5384
sucrose degradation V (sucrose alpha-glucosidase)
-
-
PWY66-373
sulfur reduction III
-
-
PWY-7976
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of coenzyme A biosynthesis III (mammals)
-
-
COA-PWY-1
superpathway of fermentation (Chlamydomonas reinhardtii)
-
-
PWY4LZ-257
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of L-aspartate and L-asparagine biosynthesis
-
-
ASPASN-PWY
superpathway of methylsalicylate metabolism
-
-
PWY18C3-25
superpathway of nicotine biosynthesis
-
-
PWY-7342
superpathway of photosynthetic hydrogen production
-
-
PWY-7731
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
-
-
REDCITCYC
TCA cycle VII (acetate-producers)
-
-
PWY-7254
TCA cycle VIII (Chlamydia)
-
-
TCA-1
tetrahydromonapterin biosynthesis
-
-
PWY0-1433
thiamine diphosphate biosynthesis I (E. coli)
-
-
PWY-6894
thiamine diphosphate biosynthesis II (Bacillus)
-
-
PWY-6893
thiamine diphosphate salvage I
-
-
PWY-6896
thiamine diphosphate salvage II
-
-
PWY-6897
thiazole component of thiamine diphosphate biosynthesis I
-
-
PWY-6892
threo-tetrahydrobiopterin biosynthesis
-
-
PWY-6983
trehalose biosynthesis IV
-
-
PWY-2622
trehalose biosynthesis V
-
-
PWY-2661
trehalose degradation I (low osmolarity)
-
-
TREDEGLOW-PWY
trehalose degradation II (cytosolic)
-
-
PWY0-1182
trehalose degradation IV
-
-
PWY-2722
trehalose degradation V
-
-
PWY-2723
tRNA charging
-
-
TRNA-CHARGING-PWY
tRNA methylation (yeast)
-
-
PWY-6829
tRNA processing
-
-
PWY0-1479
tRNA splicing I
-
-
PWY-6689
tRNA splicing II
-
-
PWY-7803
tRNA-uridine 2-thiolation and selenation (bacteria)
-
-
PWY-7892
UDP-alpha-D-glucose biosynthesis
-
-
PWY-7343
UDP-N-acetyl-D-galactosamine biosynthesis II
-
-
PWY-5514
UDP-N-acetyl-D-galactosamine biosynthesis III
-
-
PWY-8013
UDP-N-acetyl-D-glucosamine biosynthesis I
-
-
UDPNAGSYN-PWY
UDP-N-acetyl-D-glucosamine biosynthesis II
-
-
UDPNACETYLGALSYN-PWY
UMP biosynthesis I
-
-
PWY-5686
UMP biosynthesis II
-
-
PWY-7790
UMP biosynthesis III
-
-
PWY-7791
urea cycle
UTP and CTP de novo biosynthesis
-
-
PWY-7176
UTP and CTP dephosphorylation I
-
-
PWY-7185
UTP and CTP dephosphorylation II
-
-
PWY-7177
valproate beta-oxidation
-
-
PWY-8182
vancomycin resistance II
-
-
PWY-6455
vitamin K-epoxide cycle
[2Fe-2S] iron-sulfur cluster biosynthesis
-
-
PWY-7250
(5R)-carbapenem carboxylate biosynthesis
-
-
PWY-5737
dolichol and dolichyl phosphate biosynthesis
-
-
PWY-6129
folate polyglutamylation
-
-
PWY-2161
methylaspartate cycle
-
-
PWY-6728
myo-inositol biosynthesis
-
-
PWY-2301
urea cycle
-
-
PWY-4984
vitamin K-epoxide cycle
-
-
PWY-7999
Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
ORGANISM
COMMENTARY
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
289217, 391646, 440088, 485488, 489022, 641319, 644701, 650996, 651145, 653428, 659089, 659092, 660355, 660902, 662018, 669110, 669435, 673045, 673557, 674857, 676074, 677699, 684164, 684181, 685478, 687371, 687392, 688371, 688387, 688938, 689851, 690701, 694742, 701850, 703354, 704767, 707480, 710470, 711076, 722562, 722839, 724080, 726000, 727489, 728340, 728836, 729225, 733807, 735486, 736364, 737576, 737953, 740620, 744477, 745351, 747735, 750958, 757106, 759041, 759521, 760254, 760522, 763539
-
-
-
106, 440091, 643671, 651669, 657779, 660355, 669085, 671505, 680443, 684168, 713146, 715564, 716614, 719521, 719718, 722323, 722943, 723195, 723992, 724160, 725279, 725360, 725397, 725576, 725590, 725719, 726055, 726487, 726988, 727447, 727903, 729225, 731311, 731774, 735034, 742466, 742777, 744477, 745351, 747059, 749251, 750967, 751103, 751729, 752279, 753673, 754020, 756160, 756865, 758185, 759461, 759521, 761560, 761561, 761877
O59650, O74035, O93623, O93627, P58502, P77933, P95547, Q52428, Q52500, Q5JCX3, Q5JD05, Q5JD29, Q5JD38, Q5JE38, Q5JE39, Q5JEF8, Q5JER9, Q5JFG9, Q5JFI4, Q5JFM9, Q5JFW3, Q5JGF8, Q5JGP4, Q5JH57, Q5JHY2, Q5JI38, Q5JIZ5, Q5JJB9, Q6F494, Q6F4N1, Q76CZ2, Q76HN4, Q8NKS6, Q8X268, Q9HHC4, Q9YGB5
SwissProt
-
656022, 695358, 699854, 704547, 708919, 708934, 719118, 722549, 725578, 727436, 727447, 727781, 729116, 729689, 730525, 731734, 734102, 734747, 735486, 737707, 738585, 739822, 740021, 740773, 741385, 741732, 745215, 745351, 746403, 746665, 749458, 749768, 750443, 751658, 752193, 755962, 759199, 759707, 760401
Q5JD03, Q5JDA3, Q5JDA9, Q5JDG9, Q5JEK6, Q5JEV3, Q5JFG2, Q5JFG7, Q5JFK3, Q5JFV8, Q5JFW0, Q5JFW1, Q5JFZ8, Q5JGC2, Q5JGC7, Q5JH87, Q5JHA5, Q5JHF1, Q5JHS9, Q5JHT1, Q5JI09, Q5JI33, Q5JI69, Q5JIA8, Q5JIA9, Q5JIE9, Q5JIY7, Q5JIZ3, Q5JIZ8, Q5JJ59, Q9UWR7, Q9YGB1, Q9YGB4, Q9YGB8
UniProt
bifunctional 3-hexulose-6-phosphate synthase/6-phospho-3-hexuloisomerase
-
-
hyperthermophilic archaeon, highest enzyme level when grown with pyruvate as substrate
SwissProt
hyperthermophilic archaeon, strain KOD1, alpha- and beta-subunit are encoded by genes Tk-trpA and Tk-trpB
-
-
i.e. Pyrococcus kodakaraensis strain KOD1
UniProt
independent expression of subunits in Escherichia coli
UniProt
isoforms imp, inositol monophosphatatase/fructose 1,6-bisphosphatase ortholog, and fbp
-
-
KOD1, 2.7 kB DNA fragment containing ior genes, DNA sequence
UniProt
Pyrococcus kodakaraensis strain KOD1
UniProt
Q5JIJ8 i.e. delta subunit, Q5JIJ7 i.e. alpha subunit, Q5JIJ6 i.e. beta subunit
Q5JIJ8, Q5JIJ7, Q5JIJ6
UniProt
Q5JJ72: small subunit and Q5JJ73: large subunit
Q5JJ72, Q5JJ73
SwissProt
Q9YGA9: alpha-subunit, Q5JDJ1: beta-subunit TrpB2
SwissProt
Q9YGA9: alpha-subunit, Q9YGB0: beta-subunit TrpB1
SwissProt
Q9YGB0: tryptophan synthase beta chain 1 (TrpB1), Q9YGA9: tryptophan synthase alpha chain (TrpA)
SwissProt
sequence including singnal peptide (amino acid 1-24) and propeptide (amino acid 25-106)
684164, 688387, 707480, 726706, 726708, 726790, 726988, 727071, 727248, 727468, 727484, 727510, 728144, 728762
SwissProt
TK1436 encodes a protein of 675 aa; hyperthermophilic archaeon
Swissprot
TrpB1; gene trpB1, located adjacently to gene trpA in the trpCDEGFB1A operon
UniProt
TrpB2; gene trpB2, located outside the trpCDEGFB1A operon
UniProt
Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
SOURCE
additional information
additional information
anaerobic cultivation at 85°C in a nutrient-rich medium
additional information
hyperthermophilic archaeon Thermococcus kodakarensis grows at 60-100°C
additional information
-
presence o MsrABTk is greater in Thermococcus kodakaraensis cells grown at suboptimal temperatures (60 to 70°C) and could not be detected at 80 to 90°C. The amount of intracellular MsrABTk protein increases with exposure to higher dissolved oxygen levels, but only at suboptimal growth temperatures
additional information
-
presence of MsrABTk is greater in Thermococcus kodakaraensis cells grown at suboptimal temperatures (60 to 70°C) and could not be detected at 80 to 90°C. The amount of intracellular MsrABTk protein increases with exposure to higher dissolved oxygen levels, but only at suboptimal growth temperatures
additional information
Thermococcus kodakarensis grows optimally at 85°C, the mutant strain DA4 (pyrF cpkA-E530G) grows as well as the parental KU216 (pyrF) strain at 60°C, clear correlation between the CpkA-type chaperonin gene copy number and growth temperature
additional information
Thermococcus kodakarensis optimally grows at 85°C, gene disruptant strain DA1 (DELTAcpkA) shows decreased cell growth at 60°C
additional information
Thermococcus kodakarensis optimally grows at 85°C, gene disruptant strain DB1 (DELTAcpkB) shows decreased cell growth at 93°C
Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY
GeneOntology No.
LITERATURE
SOURCE
the enzyme is secreted into the external medium, probably as inactive pro-enzyme, with the assistance of the signal sequence
-
LINKS TO OTHER DATABASES (specific for Thermococcus kodakarensis)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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