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Information on Organism Pseudomonas alcaligenes

Synonyms:
ATCC 14909; CCUG 1425 A; CFBP 2437; CIP 101034; culture-collection:VKM:B:2171; DSM 50342; IAM 12411; IFO 14159; JCM 5967; LMG 1224; LMG:1224; NBRC 14159; NCCB 76044; NCTC 10367; Pseudomonas alcaligenes Monias 1928; Pseudomonas alcaligenes; VKM B-2171;
Word Map for Organism Pseudomonas alcaligenes
TaxTree of Organism Pseudomonas alcaligenes
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Pseudomonadales can be found in Brenda BRENDA pathways(order)
Pseudomonadaceae can be found in Brenda BRENDA pathways(family)
Pseudomonas can be found in Brenda BRENDA pathways(genus)
Pseudomonas aeruginosa group can be found in Brenda (species group)
Pseudomonas alcaligenes can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(R)-cysteate degradation
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-
PWY-6642
(S)-reticuline biosynthesis I
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-
PWY-3581
1,3-dimethylbenzene degradation to 3-methylbenzoate
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-
PWY-5428
1,4-dimethylbenzene degradation to 4-methylbenzoate
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-
PWY-5429
1-butanol autotrophic biosynthesis (engineered)
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-
PWY-6886
2,5-xylenol and 3,5-xylenol degradation
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-
PWY-7698
2-arachidonoylglycerol biosynthesis
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-
PWY-8052
3-(4-hydroxyphenyl)pyruvate biosynthesis
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-
PWY-5886
3-chlorobenzoate degradation III (via gentisate)
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-
PWY-6228
3-chlorocatechol degradation
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-
3-chlorotoluene degradation II
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-
PWY-6104
3-methyl-branched fatty acid alpha-oxidation
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-
PWY66-387
3-phenylpropionate degradation
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-
4-hydroxybenzoate biosynthesis I (eukaryotes)
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-
PWY-5754
5-nitroanthranilate degradation
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-
PWY-7044
5-oxo-L-proline metabolism
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-
PWY-7942
acrylonitrile degradation I
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-
PWY-7308
aerobic respiration I (cytochrome c)
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-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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-
PWY-7279
aerobic toluene degradation
-
-
alanine metabolism
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-
Alanine, aspartate and glutamate metabolism
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-
alkane oxidation
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PWY-2724
Aminobenzoate degradation
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-
aminopropylcadaverine biosynthesis
-
-
PWY0-1303
ammonia assimilation cycle I
-
-
PWY-6963
ammonia assimilation cycle II
-
-
PWY-6964
ammonia assimilation cycle III
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-
AMMASSIM-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
Arginine and proline metabolism
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-
Arginine biosynthesis
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-
arginine metabolism
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-
aromatic biogenic amine degradation (bacteria)
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PWY-7431
arsenate detoxification I
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-
PWY-8264
arsenate detoxification III
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PWY-8263
arsenic detoxification (plants)
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PWY-8259
arsenic detoxification (yeast)
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PWY-4621
arsenite to oxygen electron transfer
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PWY-4521
arsenite to oxygen electron transfer (via azurin)
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PWY-7429
Ascorbate and aldarate metabolism
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-
aspartate and asparagine metabolism
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-
Atrazine degradation
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-
atromentin biosynthesis
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PWY-7518
baicalein degradation (hydrogen peroxide detoxification)
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PWY-7214
Benzoate degradation
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-
beta-Alanine metabolism
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betanidin degradation
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-
PWY-5461
Bifidobacterium shunt
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-
P124-PWY
Biosynthesis of secondary metabolites
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-
biphenyl degradation
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-
PWY5F9-12
bisucaberin biosynthesis
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-
PWY-6381
Butanoate metabolism
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-
C4 and CAM-carbon fixation
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-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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-
PWY-7117
cadaverine biosynthesis
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-
PWY0-1601
Carbon fixation in photosynthetic organisms
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-
catechol degradation to beta-ketoadipate
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-
CATECHOL-ORTHO-CLEAVAGE-PWY
ceramide and sphingolipid recycling and degradation (yeast)
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PWY-7119
ceramide degradation by alpha-oxidation
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-
PWY66-388
chitin deacetylation
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-
PWY-7118
Chloroalkane and chloroalkene degradation
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-
Chlorocyclohexane and chlorobenzene degradation
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-
Citrate cycle (TCA cycle)
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-
citric acid cycle
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coenzyme M biosynthesis
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coenzyme M biosynthesis II
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PWY-6643
cyanophycin metabolism
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-
PWY-7052
Cysteine and methionine metabolism
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-
cysteine metabolism
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-
D-malate degradation
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PWY0-1465
degradation of aromatic, nitrogen containing compounds
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-
denitrification
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-
desferrioxamine B biosynthesis
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-
PWY-6376
desferrioxamine E biosynthesis
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PWY-6375
Dioxin degradation
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-
diphenyl ethers degradation
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PWY-7747
dopamine degradation
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-
PWY6666-2
Drug metabolism - other enzymes
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-
dTMP de novo biosynthesis (mitochondrial)
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-
PWY66-385
Entner Doudoroff pathway
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-
Entner-Doudoroff pathway I
-
-
PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
-
-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
ethanol degradation II
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PWY66-21
ethanol degradation III
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PWY66-161
ethanol degradation IV
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-
PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis V (engineered)
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-
PWY-7124
Ether lipid metabolism
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fatty acid alpha-oxidation I (plants)
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PWY-2501
Fatty acid degradation
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-
Fe(II) oxidation
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PWY-6692
Fluorobenzoate degradation
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-
folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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-
1CMET2-PWY
formaldehyde assimilation I (serine pathway)
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PWY-1622
Galactose metabolism
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-
gentisate degradation I
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-
PWY-6223
gentisate degradation II
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-
PWY-7469
gluconeogenesis
-
-
gluconeogenesis I
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-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glutamate and glutamine metabolism
-
-
Glutathione metabolism
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-
glycerol degradation to butanol
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-
PWY-7003
Glycerolipid metabolism
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-
Glycerophospholipid metabolism
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-
glycolysis
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-
Glycolysis / Gluconeogenesis
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-
glycolysis I (from glucose 6-phosphate)
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-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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-
ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
Glycosaminoglycan degradation
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-
Glycosphingolipid biosynthesis - ganglio series
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-
Glyoxylate and dicarboxylate metabolism
-
-
glyoxylate cycle
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-
GLYOXYLATE-BYPASS
heterolactic fermentation
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P122-PWY
histamine degradation
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-
PWY-6181
Histidine metabolism
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-
histidine metabolism
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hypotaurine degradation
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PWY-7387
IAA biosynthesis
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-
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis III (bacteria)
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PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
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PWY-5025
indole-3-acetate biosynthesis VI (bacteria)
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TRPIAACAT-PWY
Inositol phosphate metabolism
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Insect hormone biosynthesis
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Isoquinoline alkaloid biosynthesis
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justicidin B biosynthesis
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PWY-6824
L-arginine degradation V (arginine deiminase pathway)
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ARGDEGRAD-PWY
L-arginine degradation X (arginine monooxygenase pathway)
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ARGDEG-V-PWY
L-arginine degradation XIII (reductive Stickland reaction)
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PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
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PWY-6344
L-asparagine degradation III (mammalian)
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ASPARAGINE-DEG1-PWY-1
L-aspartate biosynthesis
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ASPARTATESYN-PWY
L-aspartate degradation I
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-
ASPARTATE-DEG1-PWY
L-aspartate degradation II (aerobic)
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PWY-8291
L-aspartate degradation III (anaerobic)
-
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PWY-8294
L-carnitine degradation II
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PWY-3641
L-glutamate degradation II
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GLUTDEG-PWY
L-glutamine biosynthesis I
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-
GLNSYN-PWY
L-leucine degradation I
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-
LEU-DEG2-PWY
L-lysine degradation I
-
-
PWY0-461
L-lysine degradation X
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-
PWY-6328
L-malate degradation II
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-
PWY-7686
L-phenylalanine biosynthesis I
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-
PHESYN
L-phenylalanine degradation II (anaerobic)
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ANAPHENOXI-PWY
L-phenylalanine degradation III
-
-
PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
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-
PWY-6318
L-phenylalanine degradation VI (reductive Stickland reaction)
-
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PWY-8014
L-tryptophan degradation IV (via indole-3-lactate)
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TRPKYNCAT-PWY
L-tryptophan degradation VIII (to tryptophol)
-
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PWY-5081
L-tryptophan degradation X (mammalian, via tryptamine)
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PWY-6307
L-tryptophan degradation XIII (reductive Stickland reaction)
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PWY-8017
L-tyrosine biosynthesis I
-
-
TYRSYN
L-tyrosine degradation I
-
-
TYRFUMCAT-PWY
L-tyrosine degradation II
-
-
PWY-5151
L-tyrosine degradation III
-
-
PWY3O-4108
L-tyrosine degradation IV (to 4-methylphenol)
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PWY-7514
L-tyrosine degradation V (reductive Stickland reaction)
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PWY-8016
leucine metabolism
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-
Limonene and pinene degradation
-
-
limonene degradation IV (anaerobic)
-
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PWY-8029
lipid metabolism
-
-
lupanine biosynthesis
-
-
PWY-5468
luteolin triglucuronide degradation
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-
PWY-7445
Lysine degradation
-
-
lysine metabolism
-
-
m-cresol degradation
-
-
M-CRESOL-DEGRADATION-PWY
malate/L-aspartate shuttle pathway
-
-
MALATE-ASPARTATE-SHUTTLE-PWY
matairesinol biosynthesis
-
-
PWY-5466
Metabolic pathways
-
-
metabolism of disaccharids
-
-
Methane metabolism
-
-
methanol oxidation to formaldehyde IV
-
-
PWY-5506
methyl indole-3-acetate interconversion
-
-
PWY-6303
methylaspartate cycle
methylsalicylate degradation
-
-
PWY18C3-24
Microbial metabolism in diverse environments
-
-
mitochondrial NADPH production (yeast)
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-
PWY-7269
mixed acid fermentation
-
-
FERMENTATION-PWY
NADPH to cytochrome c oxidase via plastocyanin
-
-
PWY-8271
nitrate assimilation
-
-
nitrate reduction I (denitrification)
-
-
DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
-
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PWY-381
nitrate reduction III (dissimilatory)
-
-
PWY0-1321
nitrate reduction IV (dissimilatory)
-
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PWY-5674
nitrate reduction IX (dissimilatory)
-
-
PWY0-1581
nitrate reduction VI (assimilatory)
-
-
PWY490-3
nitrate reduction VII (denitrification)
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-
PWY-6748
nitrate reduction VIII (dissimilatory)
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-
PWY0-1352
nitrate reduction VIIIb (dissimilatory)
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PWY0-1573
nitrate reduction X (dissimilatory, periplasmic)
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-
PWY0-1584
nitrifier denitrification
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-
PWY-7084
Nitrogen metabolism
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-
nitrogen remobilization from senescing leaves
-
-
PWY-6549
non-pathway related
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noradrenaline and adrenaline degradation
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-
PWY-6342
Novobiocin biosynthesis
-
-
octane oxidation
One carbon pool by folate
-
-
Other glycan degradation
-
-
Oxidative phosphorylation
-
-
oxidative phosphorylation
-
-
Pantothenate and CoA biosynthesis
-
-
partial TCA cycle (obligate autotrophs)
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-
PWY-5913
Penicillin and cephalosporin biosynthesis
-
-
phenol degradation
-
-
Phenylalanine metabolism
-
-
Phenylalanine, tyrosine and tryptophan biosynthesis
-
-
phenylmercury acetate degradation
Phenylpropanoid biosynthesis
-
-
phospholipases
-
-
LIPASYN-PWY
photosynthesis
-
-
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7218
phytol degradation
-
-
PWY66-389
plasmalogen biosynthesis I (aerobic)
-
-
PWY-7782
plasmalogen degradation
-
-
PWY-7783
polyamine pathway
-
-
Polycyclic aromatic hydrocarbon degradation
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-
Porphyrin and chlorophyll metabolism
-
-
propanol degradation
-
-
Purine metabolism
-
-
putrescine biosynthesis III
-
-
PWY-46
putrescine degradation III
-
-
PWY-0
pyrimidine deoxyribonucleosides degradation
-
-
PWY-7181
pyrimidine deoxyribonucleosides salvage
-
-
PWY-7199
pyrimidine deoxyribonucleotides biosynthesis from CTP
-
-
PWY-7210
pyrimidine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis II
-
-
PWY-7187
pyrimidine deoxyribonucleotides de novo biosynthesis IV
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-
PWY-7198
Pyrimidine metabolism
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-
pyrimidine metabolism
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-
pyrimidine nucleobases salvage II
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-
PWY-7194
pyrimidine ribonucleosides salvage III
-
-
PWY-7195
Pyruvate metabolism
-
-
reactive oxygen species degradation
-
-
DETOX1-PWY-1
retinol biosynthesis
-
-
PWY-6857
rosmarinic acid biosynthesis I
-
-
PWY-5048
Rubisco shunt
-
-
PWY-5723
salicin biosynthesis
-
-
PWY-6766
salicortin biosynthesis
-
-
PWY-6763
salicylate degradation IV
-
-
PWY-6640
serotonin degradation
-
-
PWY-6313
serotonin metabolism
-
-
sesamin biosynthesis
-
-
PWY-5469
Sphingolipid metabolism
-
-
sphingosine and sphingosine-1-phosphate metabolism
-
-
PWY3DJ-11470
Styrene degradation
-
-
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
sulfolactate degradation III
-
-
PWY-6638
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of glucose and xylose degradation
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-
PWY-6901
superpathway of methylsalicylate metabolism
-
-
PWY18C3-25
superpathway of ornithine degradation
-
-
ORNDEG-PWY
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
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-
PWY0-166
TCA cycle I (prokaryotic)
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-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
-
-
REDCITCYC
TCA cycle VII (acetate-producers)
-
-
PWY-7254
TCA cycle VIII (Chlamydia)
-
-
TCA-1
thymine degradation
-
-
PWY-6430
Toluene degradation
-
-
toluene degradation to benzoate
-
-
TOLUENE-DEG-CATECHOL-PWY
triacylglycerol degradation
-
-
LIPAS-PWY
Tropane, piperidine and pyridine alkaloid biosynthesis
-
-
Tryptophan metabolism
-
-
Tyrosine metabolism
-
-
tyrosine metabolism
-
-
UMP biosynthesis I
-
-
PWY-5686
UMP biosynthesis II
-
-
PWY-7790
UMP biosynthesis III
-
-
PWY-7791
uracil degradation I (reductive)
-
-
PWY-3982
urea cycle
-
-
urea degradation II
-
-
PWY-5704
Valine, leucine and isoleucine degradation
-
-
xanthommatin biosynthesis
-
-
PWY-8249
Xylene degradation
-
-
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
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LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LITERATURE
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additional information
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ORGANISM
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LITERATURE
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LINKS TO OTHER DATABASES (specific for Pseudomonas alcaligenes)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA