6.5.1.3: RNA ligase (ATP)

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For detailed information about RNA ligase (ATP), go to the full flat file.

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Synonyms

ATP-dependent RNA ligase, b1-10t, bacteriophage RNA ligase, band IV protein, class I ligase, class I RNA ligase ribozyme, DraRnI, DraRnl, DREL, gp24.1, P52, phage Rnl2, Polynucleotide synthetase, Polyribonucleotide ligase, Polyribonucleotide synthase (ATP), REL1, Ribonucleic ligase, ribonucleprotein editing complex, RM378 RNA ligase, RNA editing ligase 1, RNA ligase, RNA ligase (ATP), RNA ligase 1, RNA ligase 2, RNA ligase ribozyme, RNA-editing ligase 1, RNL, Rnl1, Rnl2, Rnl5, RnlA, RtcA, rtcB, Synthetase, polyribonucleotide, T4 RNA ligase, T4 RNA ligase 1, T4 RNA ligase 2, T4Rnl2, TbMP52, TbREL1, thermostable RNA ligase 1, Trl1

ECTree

     6 Ligases

         6.5 Forming phosphoric-ester bonds

             6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)

                6.5.1.3 RNA ligase (ATP)

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Results	in table
2	Activating Compound
2439	AA Sequence
7	Application
1	CAS Registry Number
24	Cloned(Commentary)
1	Cofactor
8	Crystallization (Commentary)
44	Disease/ Diagnostics
2	General Information
3	General Stability
4	IC50 Value
43	Inhibitors
7	kcat/KM [mM/s]
18	KM Value [mM]
10	Localization
25	Metals/Ions
14	Molecular Weight [Da]
42	Natural Substrates/ Products (Substrates)
79	Organism
24	PDB ID
15	pH Optimum
6	pH Range
181	Protein Variants
31	Purification (Commentary)
5	Reaction
2	Reaction Type
79	Reference
10	Source Tissue
17	Specific Activity [micromol/min/mg]
7	Storage Stability
136	Substrates and Products (Substrate)
9	Subunits
85	Synonyms
1	Systematic Name
6	Temperature Optimum [°C]
2	Temperature Range [°C]
6	Temperature Stability [°C]
22	Turnover Number [1/s]

Synonyms

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Synonyms on EC 6.5.1.3 - RNA ligase (ATP)

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SYNONYM

ORGANISM

UNIPROT

COMMENTARY

LITERATURE

ATP-dependent RNA ligase

5 entries

b1-10t

synthetic construct

-

-

653882

bacteriophage RNA ligase

Rhodothermus phage RM378

-

-

653392

band IV protein

Trypanosoma brucei

-

-

650982

class I ligase

synthetic construct

-

-

650172, 653882

class I RNA ligase ribozyme

synthetic construct

-

-

649963

DraRnI

Deinococcus radiodurans

-

-

662304

DraRnl

Deinococcus radiodurans

-

-

676230

DREL

Trypanosoma brucei

-

-

653217

gp24.1

Tequatrovirus T4

-

-

653679

P52

Trypanosoma brucei

-

-

653217

phage Rnl2

Vibrio phage KVP40

-

-

654015

Polynucleotide synthetase

-

-

-

-

Polyribonucleotide ligase

-

-

-

-

Polyribonucleotide synthase (ATP)

-

-

-

-

REL1

Trypanosoma brucei

P86927

-

694881, 716670

Ribonucleic ligase

-

-

-

-

ribonucleprotein editing complex

Trypanosoma brucei

-

-

653869

RM378 RNA ligase

Rhodothermus phage RM378

-

-

653392

RNA editing ligase 1

2 entries

RNA ligase

3 entries

RNA ligase (ATP)

Vibrio phage KVP40

-

-

654015

RNA ligase 1

2 entries

RNA ligase 2

3 entries

RNA ligase ribozyme

synthetic construct

-

-

650172, 653368

RNA-editing ligase 1

Trypanosoma brucei

P86927

-

694881

RNL

6 entries

Rnl1

Tequatrovirus T4

-

-

652429, 677101

Rnl2

3 entries

Rnl5

Naegleria gruberi

-

-

749277

RnlA

Rhodothermus phage RM378

-

-

653392

RtcA

Escherichia coli

-

-

728788

rtcB

Pyrococcus horikoshii

-

-

748777

Synthetase, polyribonucleotide

-

-

-

-

T4 RNA ligase

Tequatrovirus T4

-

-

650653, 651051, 651061, 652246, 653234, 653369, 707449

T4 RNA ligase 1

Escherichia coli

-

-

728488

T4 RNA ligase 2

2 entries

T4Rnl2

Tequatrovirus T4

-

-

713745

TbMP52

2 entries

TbREL1

Trypanosoma brucei

-

-

662636

thermostable RNA ligase 1

Rhodothermus phage RM378

-

-

653392

Trl1

Saccharomyces cerevisiae

-

-

676215

ATP-dependent RNA ligase

Methanothermobacter thermautotrophicus

-

-

749330

ATP-dependent RNA ligase

Methanothermobacter thermautotrophicus

O27289

-

748784

ATP-dependent RNA ligase

Methanothermobacter thermautotrophicus ATCC 29096

O27289

-

-

ATP-dependent RNA ligase

Naegleria gruberi

-

-

749172, 749277

ATP-dependent RNA ligase

Tequatrovirus T4

P32277

-

748785

RNA editing ligase 1

Trypanosoma brucei

-

-

662636

RNA editing ligase 1

Trypanosoma brucei

P86927

-

716670

RNA ligase

-

-

-

-

RNA ligase

Tequatrovirus T4

-

-

707449

RNA ligase

Trypanosoma brucei

-

-

708449

RNA ligase 1

Phage TS2126

-

-

662976

RNA ligase 1

Tequatrovirus T4

-

-

652429, 674568, 677101

RNA ligase 2

Diplonema papillatum

A0A0P0IR96

-

747437

RNA ligase 2

Tequatrovirus T4

-

-

662241

RNA ligase 2

Tequatrovirus T4

P32277

-

672949, 748785

RNL

Branchiostoma floridae

C3YGD8

-

716756

RNL

Diplonema papillatum

A0A0P0IR96

-

747437

RNL

Methanothermobacter thermautotrophicus

-

-

749330

RNL

Methanothermobacter thermautotrophicus

O27289

-

748784

RNL

Methanothermobacter thermautotrophicus ATCC 29096

O27289

-

-

RNL

Naegleria gruberi

-

-

749172

Rnl2

Tequatrovirus T4

-

-

652387, 653679, 654015, 662241, 728789

Rnl2

Tequatrovirus T4

P32277

-

653915, 672949, 748785

Rnl2

Vibrio phage KVP40

-

-

654015

T4 RNA ligase 2

Tequatrovirus T4

-

-

652387, 653679, 654015, 713745, 728789

T4 RNA ligase 2

Tequatrovirus T4

P32277

-

653915

TbMP52

Trypanosoma brucei

-

-

653217

TbMP52

Trypanosoma brucei

-

macromolecular complex with RNA ligase activity

653889