Reference on EC 2.7.7.7 - DNA-directed DNA polymerase and Organism(s) Saccharolobus solfataricus and UniProt Accession P26811
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AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Pisani, F.M.; De Felice, M.; Manco, G.; Rossi, M.
Domain organization and biochemical features of Sulfolobus solfataricus DNA polymerase
Extremophiles
2
171-177
1998
Saccharolobus solfataricus, Saccharolobus solfataricus MT4
De Felice, M.; Medagli, B.; Esposito, L.; De Falco, M.; Pucci, B.; Rossi, M.; Gruz, P.; Nohmi, T.; Pisani, F.M.
Biochemical evidence of a physical interaction between Sulfolobus solfataricus B-family and Y-family DNA polymerases
Extremophiles
11
277-282
2007
Saccharolobus solfataricus
Wang, L.; Yu, X.; Hu, P.; Broyde, S.; Zhang, Y.
A water-mediated and substrate-assisted catalytic mechanism for Sulfolobus solfataricus DNA polymerase IV
J. Am. Chem. Soc.
129
4731-4737
2007
Saccharolobus solfataricus
Eoff, R.L.; Angel, K.C.; Egli, M.; Guengerich, F.P.
Molecular basis of selectivity of nucleoside triphosphate incorporation opposite O6-benzylguanine by Sulfolobus solfataricus DNA polymerase Dpo4: steady-state and pre-steady-state kinetics and X-ray crystallography of correct and incorrect pairing
J. Biol. Chem.
282
13573-13584
2007
Saccharolobus solfataricus
Xu, P.; Oum, L.; Geacintov, N.E.; Broyde, S.
Nucleotide selectivity opposite a benzo[a]pyrene-derived N2-dG adduct in a Y-family DNA polymerase: a 5'-slippage mechanism
Biochemistry
47
2701-2709
2008
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus
Wang, Y.; Musser, S.K.; Saleh, S.; Marnett, L.J.; Egli, M.; Stone, M.P.
Insertion of dNTPs opposite the 1,N2-propanodeoxyguanosine adduct by Sulfolobus solfataricus P2 DNA polymerase IV
Biochemistry
47
7322-7334
2008
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
DeCarlo, L.; Gowda, A.S.; Suo, Z.; Spratt, T.E.
Formation of purine-purine mispairs by Sulfolobus solfataricus DNA polymerase IV
Biochemistry
47
8157-8164
2008
Saccharolobus solfataricus
Wang, Y.; Schlick, T.
Quantum mechanics/molecular mechanics investigation of the chemical reaction in Dpo4 reveals water-dependent pathways and requirements for active site reorganization
J. Am. Chem. Soc.
130
13240-13250
2008
Saccharolobus solfataricus
Fiala, K.A.; Sherrer, S.M.; Brown, J.A.; Suo, Z.
Mechanistic consequences of temperature on DNA polymerization catalyzed by a Y-family DNA polymerase
Nucleic Acids Res.
36
1990-2001
2008
Saccharolobus solfataricus
Brown, J.A.; Newmister, S.A.; Fiala, K.A.; Suo, Z.
Mechanism of double-base lesion bypass catalyzed by a Y-family DNA polymerase
Nucleic Acids Res.
36
3867-3878
2008
Saccharolobus solfataricus
Broyde, S.; Wang, L.; Rechkoblit, O.; Geacintov, N.E.; Patel, D.J.
Lesion processing: high-fidelity versus lesion-bypass DNA polymerases
Trends Biochem. Sci.
33
209-219
2008
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus
Zhang, H.; Eoff, R.L.; Kozekov, I.D.; Rizzo, C.J.; Egli, M.; Guengerich, F.P.
Structure-function relationships in miscoding by Sulfolobus solfataricus DNA polymerase Dpo4: guanine N2,N2-dimethyl substitution produces inactive and miscoding polymerase complexes
J. Biol. Chem.
284
17687-17699
2009
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Eoff, R.L.; Sanchez-Ponce, R.; Guengerich, F.P.
Conformational changes during nucleotide selection by Sulfolobus solfataricus DNA polymerase Dpo4
J. Biol. Chem.
284
21090-21099
2009
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus
Irimia, A.; Loukachevitch, L.V.; Eoff, R.L.; Guengerich, F.P.; Egli, M.
Metal-ion dependence of the active-site conformation of the translesion DNA polymerase Dpo4 from Sulfolobus solfataricus
Acta Crystallogr. Sect. F
66
1013-1018
2010
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Yang, S.; Gong, H.; Zhang, L.; Liu, Y.; He, Z.G.
Characterization of physical and functional interactions between eukaryote-like Orc1/Cdc6 proteins and Y-family DNA polymerase in the hyperthermophilic archaeon Sulfolobus solfataricus
Biochem. Biophys. Res. Commun.
396
755-762
2010
Saccharolobus solfataricus
Fiala, K.A.; Suo, Z.
Mechanism of DNA polymerization catalyzed by Sulfolobus solfataricus P2 DNA polymerase IV
Biochemistry
43
2116-2125
2004
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Irimia, A.; Zang, H.; Loukachevitch, L.V.; Eoff, R.L.; Guengerich, F.P.; Egli, M.
Calcium is a cofactor of polymerization but inhibits pyrophosphorolysis by the Sulfolobus solfataricus DNA polymerase Dpo4
Biochemistry
45
5949-5956
2006
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Eoff, R.L.; Stafford, J.B.; Szekely, J.; Rizzo, C.J.; Egli, M.; Guengerich, F.P.; Marnett, L.J.
Structural and functional analysis of Sulfolobus solfataricus Y-family DNA polymerase Dpo4-catalyzed bypass of the malondialdehyde-deoxyguanosine adduct
Biochemistry
48
7079-7088
2009
Saccharolobus solfataricus
Zhang, L.; Brown, J.A.; Newmister, S.A.; Suo, Z.
Polymerization fidelity of a replicative DNA polymerase from the hyperthermophilic archaeon Sulfolobus solfataricus P2
Biochemistry
48
7492-7501
2009
Saccharolobus solfataricus, Saccharolobus solfataricus P2
Brown, J.A.; Suo, Z.
Elucidating the kinetic mechanism of DNA polymerization catalyzed by Sulfolobus solfataricus P2 DNA polymerase B1
Biochemistry
48
7502-7511
2009
Saccharolobus solfataricus, Saccharolobus solfataricus P2
Sherrer, S.M.; Beyer, D.C.; Xia, C.X.; Fowler, J.D.; Suo, Z.
Kinetic basis of sugar selection by a Y-family DNA polymerase from Sulfolobus solfataricus P2
Biochemistry
49
10179-10186
2010
Saccharolobus solfataricus, Saccharolobus solfataricus P2
Bauer, R.J.; Begley, M.T.; Trakselis, M.A.
Kinetics and fidelity of polymerization by DNA polymerase III from Sulfolobus solfataricus
Biochemistry
51
1996-2007
2012
Saccharolobus solfataricus (P95979), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (P95979)
Zang, H.; Chowdhury, G.; Angel, K.C.; Harris, T.M.; Guengerich, F.P.
Translesion synthesis across polycyclic aromatic hydrocarbon diol epoxide adducts of deoxyadenosine by Sulfolobus solfataricus DNA polymerase Dpo4
Chem. Res. Toxicol.
19
859-867
2006
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Christov, P.P.; Petrova, K.V.; Shanmugam, G.; Kozekov, I.D.; Kozekova, A.; Guengerich, F.P.; Stone, M.P.; Rizzo, C.J.
Comparison of the in vitro replication of the 7-(2-oxoheptyl)-1,N2-etheno-2-deoxyguanosine and 1,N2-etheno-2-deoxyguanosine lesions by Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4)
Chem. Res. Toxicol.
23
1330-1341
2010
Saccharolobus solfataricus, Saccharolobus solfataricus P2
Banerjee, S.; Christov, P.P.; Kozekova, A.; Rizzo, C.J.; Egli, M.; Stone, M.P.
Replication bypass of the trans-4-hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the Sulfolobus solfataricus DNA polymerase IV
Chem. Res. Toxicol.
25
422-435
2012
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Zhang, L.; Lou, H.; Guo, L.; Zhan, Z.; Duan, Z.; Guo, X.; Huang, L.
Accurate DNA synthesis by Sulfolobus solfataricus DNA polymerase B1 at high temperature
Extremophiles
14
107-117
2010
Saccharolobus solfataricus
Rella, R.; Raia, C.A.; Pisani, F.M.; DAuria, S.; Nucci, R.; Gambacorta, A.; De Rosa, M.; Rossi, M.
Purification and properties of a thermophilic and thermostable DNA polymerase from the archaebacterium Sulfolobus solfataricus
Ital. J. Biochem.
39
83-99
1990
Saccharolobus solfataricus
Banerjee, S.; Brown, K.L.; Egli, M.; Stone, M.P.
Bypass of aflatoxin B1 adducts by the Sulfolobus solfataricus DNA polymerase IV
J. Am. Chem. Soc.
133
12556-12568
2011
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Kokoska, R.J.; McCulloch, S.D.; Kunkel, T.A.
The efficiency and specificity of apurinic/apyrimidinic site bypass by human DNA polymerase eta and Sulfolobus solfataricus Dpo4
J. Biol. Chem.
278
50537-50545
2003
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus
Zang, H.; Goodenough, A.K.; Choi, J.Y.; Irimia, A.; Loukachevitch, L.V.; Kozekov, I.D.; Angel, K.C.; Rizzo, C.J.; Egli, M.; Guengerich, F.P.
DNA adduct bypass polymerization by Sulfolobus solfataricus DNA polymerase Dpo4: analysis and crystal structures of multiple base pair substitution and frameshift products with the adduct 1,N2-ethenoguanine
J. Biol. Chem.
280
29750-29764
2005
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Cramer, J.; Restle, T.
Pre-steady-state kinetic characterization of the DinB homologue DNA polymerase of Sulfolobus solfataricus
J. Biol. Chem.
280
40552-40558
2005
Saccharolobus solfataricus
Zang, H.; Irimia, A.; Choi, J.Y.; Angel, K.C.; Loukachevitch, L.V.; Egli, M.; Guengerich, F.P.
Efficient and high fidelity incorporation of dCTP opposite 7,8-dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA polymerase Dpo4
J. Biol. Chem.
281
2358-2372
2006
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Eoff, R.L.; Irimia, A.; Egli, M.; Guengerich, F.P.
Sulfolobus solfataricus DNA polymerase Dpo4 is partially inhibited by "wobble" pairing between O6-methylguanine and cytosine, but accurate bypass is preferred
J. Biol. Chem.
282
1456-1467
2007
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Eoff, R.L.; Irimia, A.; Angel, K.C.; Egli, M.; Guengerich, F.P.
Hydrogen bonding of 7,8-dihydro-8-oxodeoxyguanosine with a charged residue in the little finger domain determines miscoding events in Sulfolobus solfataricus DNA polymerase Dpo4
J. Biol. Chem.
282
19831-19843
2007
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Irimia, A.; Eoff, R.L.; Pallan, P.S.; Guengerich, F.P.; Egli, M.
Structure and activity of Y-class DNA polymerase DPO4 from Sulfolobus solfataricus with templates containing the hydrophobic thymine analog 2,4-difluorotoluene
J. Biol. Chem.
282
36421-36433
2007
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Zhang, H.; Beckman, J.W.; Guengerich, F.P.
Frameshift deletion by Sulfolobus solfataricus P2 DNA polymerase Dpo4 T239W is selective for purines and involves normal conformational change followed by slow phosphodiester bond formation
J. Biol. Chem.
284
35144-35153
2009
Saccharolobus solfataricus, Saccharolobus solfataricus P2
Zhang, H.; Eoff, R.L.; Kozekov, I.D.; Rizzo, C.J.; Egli, M.; Guengerich, F.P.
Versatility of Y-family Sulfolobus solfataricus DNA polymerase Dpo4 in translesion synthesis past bulky N2-alkylguanine adducts
J. Biol. Chem.
284
3563-3576
2009
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Zhang, H.; Guengerich, F.P.
Effect of N2-guanyl modifications on early steps in catalysis of polymerization by Sulfolobus solfataricus P2 DNA polymerase Dpo4 T239W
J. Mol. Biol.
395
1007-1018
2010
Saccharolobus solfataricus, Saccharolobus solfataricus P2
Zhou, B.L.; Pata, J.D.; Steitz, T.A.
Crystal structure of a DinB lesion bypass DNA polymerase catalytic fragment reveals a classic polymerase catalytic domain
Mol. Cell.
8
427-437
2001
Saccharolobus solfataricus (P96022)
Silvian, L.F.; Toth, E.A.; Pham, P.; Goodman, M.F.; Ellenberger, T.
Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus
Nat. Struct. Biol.
8
984-989
2001
Saccharolobus solfataricus (P96022), Saccharolobus solfataricus
Pisani, F.M.; De Martino, C.; Rossi, M.
A DNA polymerase from the archaeon Sulfolobus solfataricus shows sequence similarity to family B DNA polymerases
Nucleic Acids Res.
20
2711-2716
1992
Saccharolobus solfataricus (P26811), Saccharolobus solfataricus MT4 (P26811)
Boudsocq, F.; Iwai, S.; Hanaoka, F.; Woodgate, R.
Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta
Nucleic Acids Res.
29
4607-4616
2001
Saccharolobus solfataricus (P96022), Saccharolobus solfataricus P2 (P96022), Saccharolobus solfataricus P2
DeLucia, A.M.; Grindley, N.D.; Joyce, C.M.
An error-prone family Y DNA polymerase (DinB homolog from Sulfolobus solfataricus) uses a steric gate residue for discrimination against ribonucleotides
Nucleic Acids Res.
31
4129-4137
2003
Saccharolobus solfataricus, Saccharolobus solfataricus (P96022)
Zhang, L.; Rechkoblit, O.; Wang, L.; Patel, D.J.; Shapiro, R.; Broyde, S.
Mutagenic nucleotide incorporation and hindered translocation by a food carcinogen C8-dG adduct in Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): modeling and dynamics studies
Nucleic Acids Res.
34
3326-3337
2006
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Wang, L.; Broyde, S.
A new anti conformation for N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (AAF-dG) allows Watson-Crick pairing in the Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4)
Nucleic Acids Res.
34
785-795
2006
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Wang, Y.; Arora, K.; Schlick, T.
Subtle but variable conformational rearrangements in the replication cycle of Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4) may accommodate lesion bypass
Protein Sci.
15
135-151
2006
Saccharolobus solfataricus, Saccharolobus solfataricus P2
Savino, C.; Federici, L.; Johnson, K.A.; Vallone, B.; Nastopoulos, V.; Rossi, M.; Pisani, F.M.; Tsernoglou, D.
Insights into DNA replication: the crystal structure of DNA polymerase B1 from the archaeon Sulfolobus solfataricus
Structure
12
2001-2008
2004
Saccharolobus solfataricus (P26811), Saccharolobus solfataricus, Saccharolobus solfataricus MT4 (P26811)
Nastopoulos, V.; Pisani, F.M.; Savino, C.; Federici, L.; Rossi, M.; Tsernoglou, D.
Crystallization and preliminary X-ray diffraction studies of DNA polymerase from the thermophilic archaeon Sulfolobus solfataricus
Acta Crystallogr. Sect. D
54
1002-1004
1998
Saccharolobus solfataricus, Saccharolobus solfataricus (P26811), Saccharolobus solfataricus P2 (P26811)
Maxwell, B.A.; Suo, Z.
Kinetic basis for the differing response to an oxidative lesion by a replicative and a lesion bypass DNA polymerase from Sulfolobus solfataricus
Biochemistry
51
3485-3496
2012
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Maxwell, B.A.; Suo, Z.
Single-molecule investigation of substrate binding kinetics and protein conformational dynamics of a B-family replicative DNA polymerase
J. Biol. Chem.
288
11590-11600
2013
Saccharolobus solfataricus
Pisani, F.M.; Manco, G.; Carratore, V.; Rossi, M.
Domain organization and DNA-induced conformational changes of an archaeal family B DNA polymerase
Biochemistry
35
9158-9166
1996
Saccharolobus solfataricus
Fiala, K.A.; Suo, Z.
Pre-steady-state kinetic studies of the fidelity of Sulfolobus solfataricus P2 DNA polymerase IV
Biochemistry
43
2106-2115
2004
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Zuo, Z.; Lin, H.K.; Trakselis, M.A.
Strand annealing and terminal transferase activities of a B-family DNA polymerase
Biochemistry
50
5379-5390
2011
Saccharolobus solfataricus
Lin, H.K.; Chase, S.F.; Laue, T.M.; Jen-Jacobson, L.; Trakselis, M.A.
Differential temperature-dependent multimeric assemblies of replication and repair polymerases on DNA increase processivity
Biochemistry
51
7367-7382
2012
Saccharolobus solfataricus (P26811), Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (P26811), Saccharolobus solfataricus P2 (Q97W02)
Ketkar, A.; Zafar, M.K.; Banerjee, S.; Marquez, V.E.; Egli, M.; Eoff, R.L.
Differential furanose selection in the active sites of archaeal DNA polymerases probed by fixed-conformation nucleotide analogues
Biochemistry
51
9234-9244
2012
Saccharolobus solfataricus, Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2, Saccharolobus solfataricus P2 (Q97W02)
Espinoza-Herrera, S.J.; Gaur, V.; Suo, Z.; Carey, P.R.
Following DNA chain extension and protein conformational changes in crystals of a Y-Family DNA polymerase via Raman crystallography
Biochemistry
52
4881
2013
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02)
Elie, C.; Salhi, S.; Rossignol, J.M.; Forterre, P.; De Recondo, A.M.
A DNA polymerase from a thermoacidophilic archaebacterium: evolutionary and technological interests
Biochim. Biophys. Acta
951
261-267
1988
Saccharolobus solfataricus
Ma, D.; Fowler, J.D.; Yuan, C.; Suo, Z.
Backbone assignment of the catalytic core of a Y-family DNA polymerase
Biomol. NMR Assign.
4
207-209
2010
Saccharolobus solfataricus
Ling, H.; Boudsocq, F.; Woodgate, R.; Yang, W.
Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication
Cell
107
91-102
2001
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Stover, J.S.; Chowdhury, G.; Zang, H.; Guengerich, F.P.; Rizzo, C.J.
Translesion synthesis past the C8- and N2-deoxyguanosine adducts of the dietary mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the NarI recognition sequence by prokaryotic DNA polymerases
Chem. Res. Toxicol.
19
1506-1517
2006
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Christov, P.P.; Angel, K.C.; Guengerich, F.P.; Rizzo, C.J.
Replication past the N5-methyl-formamidopyrimidine lesion of deoxyguanosine by DNA polymerases and an improved procedure for sequence analysis of in vitro bypass products by mass spectrometry
Chem. Res. Toxicol.
22
1086-1095
2009
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Gowda, A.S.; Krishnegowda, G.; Suo, Z.; Amin, S.; Spratt, T.E.
Low fidelity bypass of O(2)-(3-pyridyl)-4-oxobutylthymine, the most persistent bulky adduct produced by the tobacco specific nitrosamine 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone by model DNA polymerases
Chem. Res. Toxicol.
25
1195-1202
2012
Saccharolobus solfataricus
Sherrer, S.M.; Maxwell, B.A.; Pack, L.R.; Fiala, K.A.; Fowler, J.D.; Zhang, J.; Suo, Z.
Identification of an unfolding intermediate for a DNA lesion bypass polymerase
Chem. Res. Toxicol.
25
1531-1540
2012
Saccharolobus solfataricus
Lim, S.; Song, I.; Guengerich, F.P.; Choi, J.Y.
Effects of N(2)-alkylguanine, O(6)-alkylguanine, and abasic lesions on DNA binding and bypass synthesis by the euryarchaeal B-family DNA polymerase vent (exo(-))
Chem. Res. Toxicol.
25
1699-1707
2012
Thermococcus litoralis, Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02)
Cho, S.H.; Guengerich, F.P.
Replication past the butadiene diepoxide-derived DNA adduct S-[4-(N(6)-deoxyadenosinyl)-2,3-dihydroxybutyl]glutathione by DNA polymerases
Chem. Res. Toxicol.
26
1005-1013
2013
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02)
Shanmugam, G.; Minko, I.G.; Banerjee, S.; Christov, P.P.; Kozekov, I.D.; Rizzo, C.J.; Lloyd, R.S.; Egli, M.; Stone, M.P.
Ring-opening of the gamma-OH-PdG adduct promotes error-free bypass by the Sulfolobus solfataricus DNA polymerase Dpo4
Chem. Res. Toxicol.
26
1348-1360
2013
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Stornetta, A.; Angelov, T.; Guengerich, F.P.; Sturla, S.J.
Incorporation of nucleoside probes opposite O6-methylguanine by Sulfolobus solfataricus DNA polymerase Dpo4: importance of hydrogen bonding
Chembiochem
14
1634-1639
2013
Saccharolobus solfataricus, Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02)
Walsh, J.M.; Ippoliti, P.J.; Ronayne, E.A.; Rozners, E.; Beuning, P.J.
Discrimination against major groove adducts by Y-family polymerases of the DinB subfamily
DNA Repair
12
713-722
2013
Saccharolobus solfataricus
Wong, J.H.; Brown, J.A.; Suo, Z.; Blum, P.; Nohmi, T.; Ling, H.
Structural insight into dynamic bypass of the major cisplatin-DNA adduct by Y-family polymerase Dpo4
EMBO J.
29
2059-2069
2010
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Shimizu, M.; Gruz, P.; Kamiya, H.; Kim, S.R.; Pisani, F.M.; Masutani, C.; Kanke, Y.; Harashima, H.; Hanaoka, F.; Nohmi, T.
Erroneous incorporation of oxidized DNA precursors by Y-family DNA polymerases
EMBO Rep.
4
269-273
2003
Saccharolobus solfataricus, Saccharolobus solfataricus P2, Saccharolobus solfataricus P1
Asami, Y.; Murakami, M.; Shimizu, M.; Pisani, F.M.; Hayata, I.; Nohmi, T.
Visualization of the interaction between archaeal DNA polymerase and uracil-containing DNA by atomic force microscopy
Genes Cells
11
3-11
2006
Saccharolobus solfataricus
Wu, Y.; Wilson, R.C.; Pata, J.D.
The Y-family DNA polymerase Dpo4 uses a template slippage mechanism to create single-base deletions
J. Bacteriol.
193
2630-2636
2011
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Pisani, F.M., Rossi M.
Evidence that an archaeal alpha-like DNA polymerase has a modular organization of its associated catalytic activities
J. Biol. Chem.
269
7887-7992
1994
Saccharolobus solfataricus
Gruz, P.; Pisani, F.M.; Shimizu, M.; Yamada, M.; Hayashi, I.; Morikawa, K.; Nohmi, T.
Synthetic activity of Sso DNA polymerase Y1, an archaeal DinB-like DNA polymerase, is stimulated by processivity factors proliferating cell nuclear antigen and replication factor C
J. Biol. Chem.
276
47394-47401
2001
Saccharolobus solfataricus
Kokoska, R.J.; Bebenek, K.; Boudsocq, F.; Woodgate, R.; Kunkel, T.A.
Low fidelity DNA synthesis by a y family DNA polymerase due to misalignment in the active site
J. Biol. Chem.
277
19633-19638
2002
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Potapova, O.; Grindley, N.D.; Joyce, C.M.
The mutational specificity of the Dbh lesion bypass polymerase and its implications
J. Biol. Chem.
277
28157-28166
2002
Saccharolobus solfataricus
Boudsocq, F.; Kokoska, R.J.; Plosky, B.S.; Vaisman, A.; Ling, H.; Kunkel, T.A.; Yang, W.; Woodgate, R.
Investigating the role of the little finger domain of Y-family DNA polymerases in low fidelity synthesis and translesion replication
J. Biol. Chem.
279
32932-32940
2004
Sulfolobus acidocaldarius (Q4JB80), Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02), Sulfolobus acidocaldarius DSM 639 (Q4JB80)
Perlow-Poehnelt, R.A.; Likhterov, I.; Wang, L.; Scicchitano, D.A.; Geacintov, N.E.; Broyde, S.
Increased flexibility enhances misincorporation: temperature effects on nucleotide incorporation opposite a bulky carcinogen-DNA adduct by a Y-family DNA polymerase
J. Biol. Chem.
282
1397-1408
2007
Saccharolobus solfataricus, Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2, Saccharolobus solfataricus P2 (Q97W02)
Fiala, K.A.; Hypes, C.D.; Suo, Z.
Mechanism of abasic lesion bypass catalyzed by a Y-family DNA polymerase
J. Biol. Chem.
282
8188-8198
2007
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02)
Fiala, K.A.; Suo, Z.
Sloppy bypass of an abasic lesion catalyzed by a Y-family DNA polymerase
J. Biol. Chem.
282
8199-8206
2007
Saccharolobus solfataricus
Beckman, J.W.; Wang, Q.; Guengerich, F.P.
Kinetic analysis of correct nucleotide insertion by a Y-family DNA polymerase reveals conformational changes both prior to and following phosphodiester bond formation as detected by tryptophan fluorescence
J. Biol. Chem.
283
36711-36723
2008
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Sherrer, S.M.; Brown, J.A.; Pack, L.R.; Jasti, V.P.; Fowler, J.D.; Basu, A.K.; Suo, Z.
Mechanistic studies of the bypass of a bulky single-base lesion catalyzed by a Y-family DNA polymerase
J. Biol. Chem.
284
6379-6388
2009
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (Q97W02)
Choi, J.Y.; Eoff, R.L.; Pence, M.G.; Wang, J.; Martin, M.V.; Kim, E.J.; Folkmann, L.M.; Guengerich, F.P.
Roles of the four DNA polymerases of the crenarchaeon Sulfolobus solfataricus and accessory proteins in DNA replication
J. Biol. Chem.
286
31180-31193
2011
Saccharolobus solfataricus (P26811), Saccharolobus solfataricus (P95979), Saccharolobus solfataricus (Q07635), Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (P26811), Saccharolobus solfataricus P2 (P95979), Saccharolobus solfataricus P2 (Q07635), Saccharolobus solfataricus P2 (Q97W02)
Fiala, K.A.; Brown, J.A.; Ling, H.; Kshetry, A.K.; Zhang, J.; Taylor, J.S.; Yang, W.; Suo, Z.
Mechanism of template-independent nucleotide incorporation catalyzed by a template-dependent DNA polymerase
J. Mol. Biol.
365
590-602
2007
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02)
Zhang, H.; Bren, U.; Kozekov, I.D.; Rizzo, C.J.; Stec, D.F.; Guengerich, F.P.
Steric and electrostatic effects at the C2 atom substituent influence replication and miscoding of the DNA deamination product deoxyxanthosine and analogs by DNA polymerases
J. Mol. Biol.
392
251-269
2009
Saccharolobus solfataricus, Saccharolobus solfataricus P2
Kirouac, K.N.; Suo, Z.; Ling, H.
Structural mechanism of ribonucleotide discrimination by a Y-family DNA polymerase
J. Mol. Biol.
407
382-390
2011
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02)
Bauer, R.J.; Wolff, I.D.; Zuo, X.; Lin, H.K.; Trakselis, M.A.
Assembly and distributive action of an archaeal DNA polymerase holoenzyme
J. Mol. Biol.
425
4820-4836
2013
Saccharolobus solfataricus, Saccharolobus solfataricus P2
Xing, G.; Kirouac, K.; Shin, Y.J.; Bell, S.D.; Ling, H.
Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA
Mol. Microbiol.
71
678-691
2008
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02)
Sherrer, S.M.; Taggart, D.J.; Pack, L.R.; Malik, C.K.; Basu, A.K.; Suo, Z.
Quantitative analysis of the mutagenic potential of 1-aminopyrene-DNA adduct bypass catalyzed by Y-family DNA polymerases
Mutat. Res.
737
25-33
2012
Saccharolobus solfataricus
Trincao, J.; Johnson, R.E.; Wolfle, W.T.; Escalante, C.R.; Prakash, S.; Prakash, L.; Aggarwal, A.K.
Dpo4 is hindered in extending a G.T mismatch by a reverse wobble
Nat. Struct. Mol. Biol.
11
457-462
2004
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02)
Valenti, A.; Perugino, G.; Nohmi, T.; Rossi, M.; Ciaramella, M.
Inhibition of translesion DNA polymerase by archaeal reverse gyrase
Nucleic Acids Res.
37
4287-4295
2009
Saccharolobus solfataricus
Mikheikin, A.L.; Lin, H.K.; Mehta, P.; Jen-Jacobson, L.; Trakselis, M.A.
A trimeric DNA polymerase complex increases the native replication processivity
Nucleic Acids Res.
37
7194-7205
2009
Saccharolobus solfataricus (P26811), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (P26811)
Brenlla, A.; Markiewicz, R.P.; Rueda, D.; Romano, L.J.
Nucleotide selection by the Y-family DNA polymerase Dpo4 involves template translocation and misalignment
Nucleic Acids Res.
42
2555-2563
2014
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Lu, H.; Krueger, A.T.; Gao, J.; Liu, H.; Kool, E.T.
Toward a designed genetic system with biochemical function: polymerase synthesis of single and multiple size-expanded DNA base pairs
Org. Biomol. Chem.
8
2704-2710
2010
Saccharolobus solfataricus
Xu, C.; Maxwell, B.A.; Brown, J.A.; Zhang, L.; Suo, Z.
Global conformational dynamics of a Y-family DNA polymerase during catalysis
PLoS Biol.
7
e1000225
2009
Saccharolobus solfataricus
Johnson, R.E.; Prakash, L.; Prakash, S.
Distinct mechanisms of cis-syn thymine dimer bypass by Dpo4 and DNA polymerase eta
Proc. Natl. Acad. Sci. USA
102
12359-1236
2005
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus P2 (Q97W02)
Zhang, L.; Zhang, L.; Liu, Y.; Yang, S.; Gao, C.; Gong, H.; Feng, Y.; He, Z.G.
Archaeal eukaryote-like Orc1/Cdc6 initiators physically interact with DNA polymerase B1 and regulate its functions
Proc. Natl. Acad. Sci. USA
106
7792-7797
2009
Saccharolobus solfataricus
Xing, X.; Zhang, L.; Guo, L.; She, Q.; Huang, L.
Sulfolobus replication factor C stimulates the activity of DNA polymerase B1
J. Bacteriol.
196
2367-2375
2014
Saccharolobus solfataricus
Xu, W.; Ouellette, A.M.; Wawrzak, Z.; Shriver, S.; Anderson, S.M.; Zhao, L.
Kinetic and structural mechanisms of (5'S)-8,5'-cyclo-2'-deoxyguanosine-induced DNA replication stalling
Biochemistry
54
639-651
2015
Saccharolobus solfataricus (P26811), Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus, Saccharolobus solfataricus P2 (P26811), Saccharolobus solfataricus P2 (Q97W02), Saccharolobus solfataricus P2
Sholder, G.; Loechler, E.L.
A method to accurately quantitate intensities of (32)P-DNA bands when multiple bands appear in a single lane of a gel is used to study dNTP insertion opposite a benzo[a]pyrene-dG adduct by Sulfolobus DNA polymerases Dpo4 and Dbh
DNA Repair
25
97-103
2014
Sulfolobus acidocaldarius, Saccharolobus solfataricus
Raper, A.T.; Suo, Z.
Investigation of intradomain motions of a Y-family DNA polymerase during substrate binding and catalysis
Biochemistry
55
5832-5844
2016
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus ATCC 35092 (Q97W02)
An, J.; Choi, J.; Hwang, D.; Park, J.; Pemble, C.W.; Duong, T.H.M.; Kim, K.R.; Ahn, H.; Chung, H.S.; Ahn, D.R.
The crystal structure of a natural DNA polymerase complexed with mirror DNA
Chem. Commun. (Camb.)
56
2186-2189
2020
Saccharolobus solfataricus (Q97W02), Saccharolobus solfataricus ATCC 35092 (Q97W02)
