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Information on Organism Pseudomonas chlororaphis

Synonyms:
ATCC 9446; "Bacillus chlororaphis" Guignard and Sauvageau 1894; Bacillus chlororaphis; CCUG 552 B; CFBP 2132; CIP 63.22; culture-collection:VKM:B:1246; DSM 50083; HAMBI 2011; IFO 3904; JCM 2778; LMG 5004; LMG:5004; NBRC 3904; NCCB 76041; NCIB 9392; NCIMB 9392; NCTC 13002; Pseudomonas chlororaphis (Guignard and Sauvageau 1894) Bergey et al. 1930 (Approved Lists 1980) emend. Peix et al. 2007; Pseudomonas chlororaphis; Pseudomonas sp. UFB2; VKM B-1246; Pseudomonas chloroaphis; Pseudomonas chlororphis;
Word Map for Organism Pseudomonas chlororaphis
TaxTree of Organism Pseudomonas chlororaphis
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Pseudomonadales can be found in Brenda BRENDA pathways(order)
Pseudomonadaceae can be found in Brenda BRENDA pathways(family)
Pseudomonas can be found in Brenda BRENDA pathways(genus)
Pseudomonas chlororaphis group can be found in Brenda (species group)
Pseudomonas chlororaphis can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(3R)-N-[(2S)-1-hydroxy-6-[(3R)-3-isocyanobutanamido]hexan-2-yl]-3-isocyanobutanamide biosynthesis
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PWY-8320
1,2-propanediol biosynthesis from lactate (engineered)
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PWY-7541
1,5-anhydrofructose degradation
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PWY-6992
2-arachidonoylglycerol biosynthesis
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PWY-8052
2-methyl-branched fatty acid beta-oxidation
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PWY-8181
2-nitrotoluene degradation
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PWY-5641
3-chlorocatechol degradation
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3-methyl-branched fatty acid alpha-oxidation
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PWY66-387
4-aminobutanoate degradation V
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PWY-5022
4-oxopentanoate degradation
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PWY-7948
6-gingerol analog biosynthesis (engineered)
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PWY-6920
abscisic acid biosynthesis
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PWY-695
acetaldehyde biosynthesis II
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PWY-6330
acetate and ATP formation from acetyl-CoA III
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PWY-8328
acetate conversion to acetyl-CoA
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PWY0-1313
acetate fermentation
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acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acetyl-CoA fermentation to butanoate
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PWY-5676
acrylonitrile degradation I
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PWY-7308
actinomycin D biosynthesis
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PWY-7718
adlupulone and adhumulone biosynthesis
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PWY-7857
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
aerobic toluene degradation
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alanine metabolism
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Alanine, aspartate and glutamate metabolism
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aldoxime degradation
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P345-PWY
alkane biosynthesis II
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PWY-7033
alkylnitronates degradation
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PWY-723
Amaryllidacea alkaloids biosynthesis
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PWY-7826
Amino sugar and nucleotide sugar metabolism
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Aminobenzoate degradation
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ammonia assimilation cycle I
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PWY-6963
ammonia assimilation cycle II
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PWY-6964
ammonia assimilation cycle III
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AMMASSIM-PWY
ammonia oxidation II (anaerobic)
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P303-PWY
arachidonate biosynthesis
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Arachidonic acid metabolism
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arachidonic acid metabolism
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Arginine and proline metabolism
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Arginine biosynthesis
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arginine metabolism
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Ascorbate and aldarate metabolism
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ascorbate metabolism
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Atrazine degradation
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autoinducer AI-1 biosynthesis
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PWY-6157
Benzoate degradation
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beta-Alanine metabolism
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Biosynthesis of secondary metabolites
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bupropion degradation
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PWY66-241
butanoate fermentation
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Butanoate metabolism
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butanol and isobutanol biosynthesis (engineered)
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PWY-7396
Caffeine metabolism
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cannabinoid biosynthesis
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PWY-5140
Caprolactam degradation
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capsaicin biosynthesis
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PWY-5710
Carbon fixation pathways in prokaryotes
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Carotenoid biosynthesis
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catechol degradation to 2-hydroxypentadienoate I
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P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
catechol degradation to beta-ketoadipate
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CATECHOL-ORTHO-CLEAVAGE-PWY
cellulose degradation
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cellulose degradation II (fungi)
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PWY-6788
ceramide and sphingolipid recycling and degradation (yeast)
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PWY-7119
ceramide biosynthesis
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ceramide degradation by alpha-oxidation
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PWY66-388
chitin deacetylation
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PWY-7118
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
Chlorocyclohexane and chlorobenzene degradation
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cis-geranyl-CoA degradation
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PWY-6672
citric acid cycle
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CO2 fixation in Crenarchaeota
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colupulone and cohumulone biosynthesis
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PWY-5133
creatinine degradation
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creatinine degradation II
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PWY-4722
cutin biosynthesis
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PWY-321
Cyanoamino acid metabolism
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Cysteine and methionine metabolism
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D-Amino acid metabolism
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degradation of aromatic, nitrogen containing compounds
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degradation of sugar alcohols
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denitrification
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diazepinomicin biosynthesis
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PWY-8382
diethylphosphate degradation
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PWY-5491
Drug metabolism - cytochrome P450
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Drug metabolism - other enzymes
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Entner Doudoroff pathway
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Entner-Doudoroff pathway II (non-phosphorylative)
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NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
Entner-Doudoroff shunt
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ENTNER-DOUDOROFF-PWY
ethanol degradation II
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PWY66-21
ethanol degradation III
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PWY66-161
ethanol degradation IV
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PWY66-162
ethanol fermentation
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ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis V (engineered)
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PWY-7124
Ether lipid metabolism
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ethylmalonyl-CoA pathway
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PWY-5741
Fatty acid biosynthesis
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Fatty acid degradation
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fatty acid salvage
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PWY-7094
Fe(II) oxidation
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PWY-6692
Fluorobenzoate degradation
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Folate biosynthesis
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formate to nitrite electron transfer
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PWY0-1585
Galactose metabolism
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gallate degradation III (anaerobic)
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P3-PWY
gamma-linolenate biosynthesis II (animals)
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PWY-6000
glucose and glucose-1-phosphate degradation
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GLUCOSE1PMETAB-PWY
glucose degradation (oxidative)
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DHGLUCONATE-PYR-CAT-PWY
glutamate and glutamine metabolism
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glutaminyl-tRNAgln biosynthesis via transamidation
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PWY-5921
glycerol degradation I
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PWY-4261
Glycerolipid metabolism
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Glycerophospholipid metabolism
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Glycolysis / Gluconeogenesis
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Glycosaminoglycan degradation
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Glycosphingolipid biosynthesis - ganglio series
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Glycosphingolipid biosynthesis - globo and isoglobo series
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Glyoxylate and dicarboxylate metabolism
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glyoxylate cycle
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GLYOXYLATE-BYPASS
IAA biosynthesis
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icosapentaenoate biosynthesis II (6-desaturase, mammals)
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PWY-7049
icosapentaenoate biosynthesis III (8-desaturase, mammals)
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PWY-7724
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis III (bacteria)
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PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
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PWY-5025
Inositol phosphate metabolism
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L-arginine degradation X (arginine monooxygenase pathway)
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ARGDEG-V-PWY
L-ascorbate biosynthesis IV (animals, D-glucuronate pathway)
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PWY3DJ-35471
L-ascorbate biosynthesis VI (plants, myo-inositol pathway)
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PWY-8142
L-ascorbate biosynthesis VIII (engineered pathway)
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PWY-7165
L-asparagine biosynthesis III (tRNA-dependent)
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PWY490-4
L-aspartate degradation II (aerobic)
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PWY-8291
L-aspartate degradation III (anaerobic)
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PWY-8294
L-citrulline biosynthesis
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CITRULBIO-PWY
L-glutamate biosynthesis I
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GLUTSYN-PWY
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-glutamate degradation XI (reductive Stickland reaction)
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PWY-8190
L-glutamine biosynthesis I
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GLNSYN-PWY
L-glutamine degradation I
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GLUTAMINDEG-PWY
L-isoleucine biosynthesis V
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PWY-5108
L-methionine degradation III
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PWY-5082
L-tyrosine degradation I
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TYRFUMCAT-PWY
linoleate biosynthesis II (animals)
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PWY-6001
Linoleic acid metabolism
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lipid metabolism
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long chain fatty acid ester synthesis (engineered)
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PWY-6873
long-chain fatty acid activation
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PWY-5143
lupulone and humulone biosynthesis
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PWY-5132
melatonin degradation I
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PWY-6398
melibiose degradation
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PWY0-1301
Metabolic pathways
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metabolism of disaccharids
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Metabolism of xenobiotics by cytochrome P450
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Methane metabolism
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methanol oxidation to formaldehyde IV
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PWY-5506
methionine metabolism
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methyl indole-3-acetate interconversion
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PWY-6303
methylaspartate cycle
methylsalicylate degradation
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PWY18C3-24
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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PWY-381
nitrate reduction III (dissimilatory)
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PWY0-1321
nitrate reduction IX (dissimilatory)
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PWY0-1581
nitrate reduction V (assimilatory)
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PWY-5675
nitrate reduction VII (denitrification)
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PWY-6748
nitrate reduction VIII (dissimilatory)
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PWY0-1352
nitrate reduction VIIIb (dissimilatory)
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PWY0-1573
nitrate reduction X (dissimilatory, periplasmic)
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PWY0-1584
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
Nitrogen metabolism
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nitrogen remobilization from senescing leaves
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PWY-6549
nocardicin A biosynthesis
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PWY-7797
non-pathway related
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octane oxidation
oleate beta-oxidation
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PWY0-1337
oleate biosynthesis I (plants)
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PWY-5147
Other glycan degradation
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Oxidative phosphorylation
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oxidative phosphorylation
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palmitate biosynthesis II (type II fatty acid synthase)
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PWY-5971
palmitate biosynthesis III
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PWY-8279
Pantothenate and CoA biosynthesis
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pantothenate biosynthesis
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partial TCA cycle (obligate autotrophs)
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PWY-5913
pectin degradation I
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PWY-7246
pectin degradation II
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PWY-7248
Pentose and glucuronate interconversions
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Pentose phosphate pathway
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Phenazine biosynthesis
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phenazine-1-carboxylate biosynthesis
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PWY-5770
phenol degradation
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Phenylalanine metabolism
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phosphatidylcholine acyl editing
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PWY-6803
phospholipases
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LIPASYN-PWY
phosphopantothenate biosynthesis I
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PANTO-PWY
Photosynthesis
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photosynthesis
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photosynthesis light reactions
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PWY-101
phytate degradation I
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PWY-4702
phytol degradation
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PWY66-389
plasmalogen biosynthesis I (aerobic)
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PWY-7782
plasmalogen degradation
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PWY-7783
polyhydroxybutanoate biosynthesis
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PWY1-3
polyhydroxydecanoate biosynthesis
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PWY-6657
polyphosphate metabolism
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PWY-8138
propanoate fermentation to 2-methylbutanoate
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PWY-5109
Propanoate metabolism
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propanol degradation
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protective electron sinks in the thylakoid membrane (PSII to PTOX)
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PWY1YI0-7
prunasin and amygdalin biosynthesis
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PWY-7824
Purine metabolism
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Pyrimidine metabolism
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pyrimidine metabolism
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pyrimidine nucleobases salvage II
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PWY-7194
pyrimidine ribonucleosides salvage III
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PWY-7195
pyruvate fermentation to acetate VIII
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PWY-5768
pyruvate fermentation to acetoin III
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PWY3O-440
pyruvate fermentation to ethanol II
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PWY-5486
pyruvate fermentation to propanoate II (acrylate pathway)
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PWY-5494
Pyruvate metabolism
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reactive oxygen species degradation
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DETOX1-PWY-1
reductive glycine pathway of autotrophic CO2 fixation
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PWY-8303
retinol biosynthesis
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PWY-6857
Retinol metabolism
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sorbitol biosynthesis II
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PWY-5530
Sphingolipid metabolism
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sphingosine and sphingosine-1-phosphate metabolism
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PWY3DJ-11470
sporopollenin precursors biosynthesis
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PWY-6733
stachyose degradation
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PWY-6527
Starch and sucrose metabolism
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stearate biosynthesis I (animals)
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PWY-5972
stearate biosynthesis II (bacteria and plants)
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PWY-5989
stearate biosynthesis IV
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PWY-8280
Steroid hormone biosynthesis
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Styrene degradation
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suberin monomers biosynthesis
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PWY-1121
succinate fermentation to butanoate
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PWY-5677
sulfopterin metabolism
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superoxide radicals degradation
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DETOX1-PWY
superpathway of methylsalicylate metabolism
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PWY18C3-25
taurine biosynthesis I
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PWY-5331
taurine biosynthesis II
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PWY-7850
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
Thiamine metabolism
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thymine degradation
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PWY-6430
Toluene degradation
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toluene degradation II (aerobic) (via 4-methylcatechol)
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TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
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TOLUENE-DEG-2-OH-PWY
triacylglycerol degradation
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LIPAS-PWY
Tryptophan metabolism
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tryptophan metabolism
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Tyrosine metabolism
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tyrosine metabolism
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uracil degradation I (reductive)
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PWY-3982
urea cycle
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urea degradation II
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PWY-5704
valine metabolism
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valproate beta-oxidation
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PWY-8182
vanillin biosynthesis I
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PWY-5665
wax esters biosynthesis II
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PWY-5885
Xylene degradation
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xyloglucan degradation II (exoglucanase)
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PWY-6807
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
rhizophere of Nicotiana tabacum Xanthi hosts the rhizobacterium Pseudomonas chlororaphis O6, effects of 6-phosphogluconate dehydratase on root colonisation and induction of systemic resistance by Pseudomonas chlororaphis 06 analyzed
Manually annotated by BRENDA team
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
additional information
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non-cytoplasmic enzyme
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Manually annotated by BRENDA team
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LINKS TO OTHER DATABASES (specific for Pseudomonas chlororaphis)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA