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Information on Organism Pyrococcus abyssi

Synonyms:
CNCM I-1302; "Pyrococcus abyssi" Erauso et al. 1993; Pyrococcus abyssi; strain GE5; strain Orsay;
Word Map for Organism Pyrococcus abyssi
TaxTree of Organism Pyrococcus abyssi
Condensed Tree View
cellular organisms
Archaea can be found in Brenda BRENDA pathways(superkingdom)
Euryarchaeota can be found in Brenda BRENDA pathways(phylum)
Thermococci can be found in Brenda BRENDA pathways(class)
Thermococcales can be found in Brenda BRENDA pathways(order)
Thermococcaceae can be found in Brenda BRENDA pathways(family)
Pyrococcus can be found in Brenda BRENDA pathways(genus)
Pyrococcus abyssi can be found in Brenda BRENDA pathways(species)
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EC NUMBER
COMMENTARY hide
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(1,4)-beta-D-xylan degradation
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PWY-6717
(5R)-carbapenem carboxylate biosynthesis
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
(S)-propane-1,2-diol degradation
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PWY-7013
3-dehydroquinate biosynthesis I
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PWY-6164
3-methylbutanol biosynthesis (engineered)
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PWY-6871
7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
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PWY-7286
ABH and Lewis epitopes biosynthesis from type 1 precursor disaccharide
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PWY-7832
ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide
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PWY-7831
acetaldehyde biosynthesis I
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PWY-6333
acetylene degradation (anaerobic)
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P161-PWY
acrylonitrile degradation I
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PWY-7308
acrylonitrile degradation II
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PWY-7309
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
Alanine, aspartate and glutamate metabolism
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aldoxime degradation
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P345-PWY
alpha-Linolenic acid metabolism
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Amino sugar and nucleotide sugar metabolism
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Aminoacyl-tRNA biosynthesis
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Aminobenzoate degradation
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anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
Arginine and proline metabolism
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Arginine biosynthesis
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arginine metabolism
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aspartate and asparagine metabolism
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assimilatory sulfate reduction II
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SULFMETII-PWY
assimilatory sulfate reduction III
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PWY-6683
assimilatory sulfate reduction IV
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PWY1ZNC-1
ATP biosynthesis
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PWY-7980
beta-Alanine metabolism
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Biosynthesis of secondary metabolites
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butanol and isobutanol biosynthesis (engineered)
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PWY-7396
Carbon fixation pathways in prokaryotes
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cellulose and hemicellulose degradation (cellulolosome)
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PWY-6784
Chloroalkane and chloroalkene degradation
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chorismate metabolism
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Citrate cycle (TCA cycle)
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citric acid cycle
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coenzyme A biosynthesis I (bacteria)
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COA-PWY
coenzyme A biosynthesis II (eukaryotic)
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PWY-7851
coenzyme A biosynthesis III (archaea)
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PWY-8342
coenzyme A metabolism
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creatine phosphate biosynthesis
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PWY-6158
Cyanoamino acid metabolism
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Cysteine and methionine metabolism
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d-xylose degradation
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degradation of aromatic, nitrogen containing compounds
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degradation of pentoses
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diethylphosphate degradation
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PWY-5491
dissimilatory sulfate reduction I (to hydrogen sufide))
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DISSULFRED-PWY
Drug metabolism - cytochrome P450
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Drug metabolism - other enzymes
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dTMP de novo biosynthesis (mitochondrial)
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PWY66-385
ethanol degradation I
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ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
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PWY66-21
ethanol fermentation
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ethanolamine utilization
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PWY0-1477
Fatty acid degradation
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Fe(II) oxidation
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PWY-6692
Fluorobenzoate degradation
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Folate biosynthesis
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folate polyglutamylation
folate transformations I
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PWY-2201
folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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1CMET2-PWY
formaldehyde assimilation I (serine pathway)
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PWY-1622
Galactose metabolism
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glutamate and glutamine metabolism
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glycine betaine degradation I
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PWY-3661
glycine betaine degradation II (mammalian)
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PWY-3661-1
glycine betaine degradation III
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PWY-8325
glycine biosynthesis I
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GLYSYN-PWY
glycine metabolism
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Glycine, serine and threonine metabolism
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glycogen biosynthesis
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glycogen biosynthesis I (from ADP-D-Glucose)
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GLYCOGENSYNTH-PWY
glycogen biosynthesis II (from UDP-D-Glucose)
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PWY-5067
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
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PWY-7900
glycogen metabolism
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Glycolysis / Gluconeogenesis
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Glycosaminoglycan degradation
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Glycosphingolipid biosynthesis - ganglio series
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Glycosphingolipid biosynthesis - lacto and neolacto series
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Glyoxylate and dicarboxylate metabolism
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heme metabolism
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heterolactic fermentation
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P122-PWY
IAA biosynthesis
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incomplete reductive TCA cycle
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P42-PWY
indole glucosinolate activation (herbivore attack)
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PWYQT-4476
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis III (bacteria)
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PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
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PWY-5025
indole-3-acetate biosynthesis V (bacteria and fungi)
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PWY-5026
isoprene biosynthesis II (engineered)
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PWY-7391
L-arginine biosynthesis I (via L-ornithine)
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ARGSYN-PWY
L-arginine biosynthesis II (acetyl cycle)
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ARGSYNBSUB-PWY
L-arginine biosynthesis III (via N-acetyl-L-citrulline)
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PWY-5154
L-arginine biosynthesis IV (archaea)
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PWY-7400
L-arginine degradation X (arginine monooxygenase pathway)
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ARGDEG-V-PWY
L-arginine degradation XIII (reductive Stickland reaction)
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PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
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PWY-6344
L-asparagine biosynthesis I
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ASPARAGINE-BIOSYNTHESIS
L-asparagine biosynthesis II
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ASPARAGINESYN-PWY
L-asparagine degradation I
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ASPARAGINE-DEG1-PWY
L-asparagine degradation III (mammalian)
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ASPARAGINE-DEG1-PWY-1
L-citrulline biosynthesis
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CITRULBIO-PWY
L-citrulline degradation
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CITRULLINE-DEG-PWY
L-cysteine biosynthesis II (tRNA-dependent)
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PWY-6308
L-isoleucine degradation II
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PWY-5078
L-leucine degradation III
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PWY-5076
L-methionine degradation III
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PWY-5082
L-Ndelta-acetylornithine biosynthesis
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PWY-6922
L-phenylalanine degradation III
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PWY-5079
L-proline degradation I
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PROUT-PWY
L-tryptophan degradation V (side chain pathway)
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PWY-3162
L-tyrosine degradation III
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PWY3O-4108
L-valine degradation II
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PWY-5057
leucine metabolism
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linezolid resistance
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PWY-6828
Metabolic pathways
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metabolism of disaccharids
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Metabolism of xenobiotics by cytochrome P450
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Methane metabolism
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methionine metabolism
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methylaspartate cycle
methylwyosine biosynthesis
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PWY-7285
mevalonate metabolism
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mevalonate pathway I (eukaryotes and bacteria)
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PWY-922
mevalonate pathway II (haloarchaea)
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PWY-6174
mevalonate pathway III (Thermoplasma)
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PWY-7524
mevalonate pathway IV (archaea)
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PWY-8125
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
molybdenum cofactor biosynthesis
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PWY-8171
Monobactam biosynthesis
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-
mRNA capping II
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PWY-7379
N-Glycan biosynthesis
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N6-L-threonylcarbamoyladenosine37-modified tRNA biosynthesis
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PWY0-1587
NAD(P)/NADPH interconversion
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PWY-5083
NADH to cytochrome bd oxidase electron transfer I
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PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
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PWY0-1335
Naphthalene degradation
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Nitrogen metabolism
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noradrenaline and adrenaline degradation
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PWY-6342
One carbon pool by folate
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Other glycan degradation
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Oxidative phosphorylation
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oxidative phosphorylation
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Pantothenate and CoA biosynthesis
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pantothenate biosynthesis
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partial TCA cycle (obligate autotrophs)
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PWY-5913
Penicillin and cephalosporin biosynthesis
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Peptidoglycan biosynthesis
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peptidoglycan biosynthesis
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peptidoglycan biosynthesis II (staphylococci)
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PWY-5265
peptidoglycan biosynthesis IV (Enterococcus faecium)
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PWY-6471
peptidoglycan maturation (meso-diaminopimelate containing)
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PWY0-1586
Phenylalanine metabolism
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phenylalanine metabolism
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Phenylalanine, tyrosine and tryptophan biosynthesis
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phenylethanol biosynthesis
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PWY-5751
phosphopantothenate biosynthesis I
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PANTO-PWY
photorespiration I
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PWY-181
photorespiration II
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PWY-8362
photorespiration III
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PWY-8363
Photosynthesis
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phytol degradation
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PWY66-389
Porphyrin and chlorophyll metabolism
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proline metabolism
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proline to cytochrome bo oxidase electron transfer
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PWY0-1544
propanol degradation
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protein N-glycosylation initial phase (eukaryotic)
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MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
pseudouridine degradation
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PWY-6019
Purine metabolism
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purine metabolism
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purine nucleobases degradation II (anaerobic)
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PWY-5497
pyrimidine deoxyribonucleosides salvage
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PWY-7199
pyrimidine deoxyribonucleotides biosynthesis from CTP
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PWY-7210
pyrimidine deoxyribonucleotides de novo biosynthesis I
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PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis II
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PWY-7187
pyrimidine deoxyribonucleotides de novo biosynthesis III
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PWY-6545
pyrimidine deoxyribonucleotides de novo biosynthesis IV
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PWY-7198
Pyrimidine metabolism
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pyrimidine metabolism
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pyruvate fermentation to ethanol I
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PWY-5480
pyruvate fermentation to ethanol II
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PWY-5486
pyruvate fermentation to ethanol III
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PWY-6587
pyruvate fermentation to isobutanol (engineered)
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PWY-7111
pyruvate fermentation to propanoate I
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P108-PWY
Pyruvate metabolism
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queuosine biosynthesis I (de novo)
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PWY-6700
queuosine biosynthesis III (queuosine salvage)
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PWY-8106
reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
Retinol metabolism
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-
salidroside biosynthesis
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PWY-6802
selenate reduction
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-
PWY-6932
Selenocompound metabolism
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serotonin degradation
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PWY-6313
serotonin metabolism
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Sphingolipid metabolism
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Starch and sucrose metabolism
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starch biosynthesis
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PWY-622
Styrene degradation
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sulfate activation for sulfonation
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PWY-5340
sulfate reduction
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sulfite oxidation III
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PWY-5278
sulfopterin metabolism
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Sulfur metabolism
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superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
superpathway of L-aspartate and L-asparagine biosynthesis
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ASPASN-PWY
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
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PWY0-166
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
TCA cycle VIII (Chlamydia)
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TCA-1
Terpenoid backbone biosynthesis
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tetrapyrrole biosynthesis I (from glutamate)
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PWY-5188
Thiamine metabolism
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-
threonine metabolism
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trehalose biosynthesis IV
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PWY-2622
tRNA charging
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TRNA-CHARGING-PWY
tRNA methylation (yeast)
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PWY-6829
tRNA processing
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PWY0-1479
tRNA splicing I
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PWY-6689
tRNA splicing II
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PWY-7803
Tryptophan metabolism
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-
Tyrosine metabolism
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tyrosine metabolism
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-
UMP biosynthesis I
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PWY-5686
UMP biosynthesis II
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PWY-7790
UMP biosynthesis III
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PWY-7791
urea cycle
valine metabolism
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Various types of N-glycan biosynthesis
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xyloglucan degradation II (exoglucanase)
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PWY-6807
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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ModB protein
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Manually annotated by BRENDA team
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ModA protein
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Manually annotated by BRENDA team
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LINKS TO OTHER DATABASES (specific for Pyrococcus abyssi)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA