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Information on Organism Xanthomonas citri

Synonyms:
ATCC 49118; ICMP 15804; ICPB 10518; LMG 9322; LMG:9322; strain 3213; Xanthomonas axonopodis pv. citri; Xanthomonas campestris (pv. citri); Xanthomonas citri (ex Hasse 1915) Gabriel et al. 1989 emend. Ah-You et al. 2009; Xanthomonas citri (ex Hasse 1915) Gabriel et al. 1989 emend. Constantin et al. 2016; "Xanthomonas citri" (ex Hasse 1915) Gabriel et al. 1989 emend. Schaad et al. 2006; Xanthomonas citri (ex Hasse 1915) Gabriel et al. 1989 emend. Schaad et al. 2006 emend. Ah-You et al. 2009 emend. Constantin et al. 2016; "Xanthomonas citri" (Hasse 1915) Dowson 1939; Xanthomonas citri; "Xanthomonas citri" (ex Hasse 1915) Gabriel et al. 1989, emend. Schaad et al. 2006; Xanthomonas citri (ex Hasse 1915) Gabriel et al. 1989; Xanthomonas citri (ex Hasse 1915) Gabriel et al. 1989 emend. Constantin et al. 2017;
Word Map for Organism Xanthomonas citri
TaxTree of Organism Xanthomonas citri
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Xanthomonadales can be found in Brenda BRENDA pathways(order)
Xanthomonadaceae can be found in Brenda BRENDA pathways(family)
Xanthomonas can be found in Brenda BRENDA pathways(genus)
Xanthomonas citri group can be found in Brenda (species group)
Xanthomonas citri can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)
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-
PWY-7726
(8E,10E)-dodeca-8,10-dienol biosynthesis
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PWY-7654
(S)-reticuline biosynthesis
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-
(S)-reticuline biosynthesis I
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-
PWY-3581
(S)-reticuline biosynthesis II
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-
PWY-6133
1,3-beta-D-glucan biosynthesis
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-
PWY-6773
1,5-anhydrofructose degradation
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-
PWY-6992
2-arachidonoylglycerol biosynthesis
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-
PWY-8052
2-methyl-branched fatty acid beta-oxidation
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-
PWY-8181
2-oxoglutarate decarboxylation to succinyl-CoA
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-
PWY-5084
3-phenylpropanoate degradation
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-
P281-PWY
4-hydroxy-2-nonenal detoxification
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PWY-7112
Acarbose and validamycin biosynthesis
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-
acetone degradation I (to methylglyoxal)
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-
PWY-5451
acetone degradation III (to propane-1,2-diol)
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-
PWY-7466
acrylonitrile degradation I
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PWY-7308
adenine and adenosine salvage I
-
-
P121-PWY
adenine and adenosine salvage III
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-
PWY-6609
adenine and adenosine salvage V
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-
PWY-6611
adenosine nucleotides degradation II
-
-
SALVADEHYPOX-PWY
adipate biosynthesis
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-
PWY-8347
adipate degradation
aerobic respiration I (cytochrome c)
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-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
alanine metabolism
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-
alpha-Linolenic acid metabolism
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Amaryllidacea alkaloids biosynthesis
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PWY-7826
Amino sugar and nucleotide sugar metabolism
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-
Aminoacyl-tRNA biosynthesis
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-
Aminobenzoate degradation
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apratoxin A biosynthesis
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PWY-8361
Arachidonic acid metabolism
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-
arachidonic acid metabolism
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-
Arginine and proline metabolism
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-
arginine metabolism
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arsenate detoxification I
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PWY-8264
arsenic detoxification (mammals)
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PWY-4202
Ascorbate and aldarate metabolism
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ascorbate metabolism
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-
ATP biosynthesis
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PWY-7980
avenanthramide biosynthesis
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PWY-8157
bacilysin biosynthesis
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-
PWY-7626
bacterial bioluminescence
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-
PWY-7723
benzoate biosynthesis I (CoA-dependent, beta-oxidative)
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PWY-6443
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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PWY-6444
benzoate biosynthesis III (CoA-dependent, non-beta-oxidative)
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PWY-6446
Benzoate degradation
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-
benzoyl-CoA biosynthesis
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PWY-6458
benzoyl-CoA degradation I (aerobic)
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PWY-1361
beta-(1,4)-mannan degradation
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PWY-7456
beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
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-
PWY-7586
beta-Alanine metabolism
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-
Biosynthesis of secondary metabolites
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-
Biosynthesis of siderophore group nonribosomal peptides
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-
Biosynthesis of unsaturated fatty acids
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-
Brassinosteroid biosynthesis
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-
bupropion degradation
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PWY66-241
Butanoate metabolism
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-
Caffeine metabolism
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-
Calvin-Benson-Bassham cycle
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-
CALVIN-PWY
camalexin biosynthesis
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-
CAMALEXIN-SYN
Caprolactam degradation
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-
Carbon fixation in photosynthetic organisms
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-
Carbon fixation pathways in prokaryotes
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-
Carotenoid biosynthesis
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carotenoid biosynthesis
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-
CDP-6-deoxy-D-gulose biosynthesis
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PWY-8139
cellulose degradation
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cellulose degradation II (fungi)
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PWY-6788
chitin biosynthesis
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PWY-6981
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
chlorosalicylate degradation
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PWY-6107
cinnamoyl-CoA biosynthesis
-
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PWY-6457
Citrate cycle (TCA cycle)
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-
curacin A biosynthesis
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-
PWY-8358
cutin biosynthesis
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-
PWY-321
Cysteine and methionine metabolism
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-
D-galactose degradation I (Leloir pathway)
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-
PWY-6317
d-mannose degradation
-
-
D-mannose degradation I
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MANNCAT-PWY
D-mannose degradation II
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PWY3O-1743
degradation of aromatic, nitrogen containing compounds
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-
degradation of hexoses
-
-
degradation of pentoses
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diethylphosphate degradation
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PWY-5491
Dioxin degradation
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docosahexaenoate biosynthesis III (6-desaturase, mammals)
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PWY-7606
Drug metabolism - cytochrome P450
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Drug metabolism - other enzymes
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dTDP-3-acetamido-3,6-dideoxy-alpha-D-glucose biosynthesis
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PWY-7318
dTDP-3-acetamido-alpha-D-fucose biosynthesis
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-
PWY-6953
dTDP-4-O-demethyl-beta-L-noviose biosynthesis
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PWY-7301
dTDP-6-deoxy-alpha-D-allose biosynthesis
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-
PWY-7413
dTDP-alpha-D-forosamine biosynthesis
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PWY-6808
dTDP-alpha-D-mycaminose biosynthesis
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PWY-7414
dTDP-alpha-D-olivose, dTDP-alpha-D-oliose and dTDP-alpha-D-mycarose biosynthesis
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PWY-6973
dTDP-alpha-D-ravidosamine and dTDP-4-acetyl-alpha-D-ravidosamine biosynthesis
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PWY-7688
dTDP-beta-D-fucofuranose biosynthesis
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PWY-7312
dTDP-beta-L-4-epi-vancosamine biosynthesis
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PWY-7440
dTDP-beta-L-digitoxose biosynthesis
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PWY-7657
dTDP-beta-L-megosamine biosynthesis
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PWY-7104
dTDP-beta-L-mycarose biosynthesis
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PWY-6976
dTDP-beta-L-olivose biosynthesis
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PWY-6974
dTDP-beta-L-rhamnose biosynthesis
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DTDPRHAMSYN-PWY
dTDP-D-desosamine biosynthesis
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PWY-6942
dTDP-L-daunosamine biosynthesis
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PWY-7814
dTDP-N-acetylthomosamine biosynthesis
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PWY-7315
dTDP-N-acetylviosamine biosynthesis
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PWY-7316
dTDP-sibirosamine biosynthesis
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PWY-8380
dTDPLrhamnose biosynthesis
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dZTP biosynthesis
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PWY-8289
Entner Doudoroff pathway
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Entner-Doudoroff pathway II (non-phosphorylative)
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NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
ephedrine biosynthesis
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PWY-5883
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
Ether lipid metabolism
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-
fatty acid beta-oxidation I (generic)
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FAO-PWY
fatty acid beta-oxidation II (plant peroxisome)
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PWY-5136
fatty acid beta-oxidation IV (unsaturated, even number)
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PWY-5138
fatty acid beta-oxidation VI (mammalian peroxisome)
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PWY66-391
Fatty acid degradation
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Fatty acid elongation
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Fe(II) oxidation
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PWY-6692
ferrichrome A biosynthesis
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PWY-7571
flavin biosynthesis
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-
flavin biosynthesis I (bacteria and plants)
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RIBOSYN2-PWY
flavin biosynthesis II (archaea)
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PWY-6167
flavin biosynthesis III (fungi)
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PWY-6168
fluoroacetate and fluorothreonine biosynthesis
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PWY-6644
Folate biosynthesis
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formate to nitrite electron transfer
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PWY0-1585
fructan degradation
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PWY-862
Fructose and mannose metabolism
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-
Galactose metabolism
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-
GDP-alpha-D-glucose biosynthesis
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PWY-5661
GDP-mannose biosynthesis
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PWY-5659
Geraniol degradation
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gliotoxin biosynthesis
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PWY-7533
glucose and glucose-1-phosphate degradation
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GLUCOSE1PMETAB-PWY
glucose degradation (oxidative)
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DHGLUCONATE-PYR-CAT-PWY
glucosylglycerol biosynthesis
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PWY-7902
Glutathione metabolism
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-
glutathione metabolism
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-
glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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PWY-6842
Glycerolipid metabolism
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-
Glycerophospholipid metabolism
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-
glycogen biosynthesis
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-
glycogen biosynthesis I (from ADP-D-Glucose)
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GLYCOGENSYNTH-PWY
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
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PWY-7900
glycogen degradation I
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-
GLYCOCAT-PWY
glycogen degradation II
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-
PWY-5941
glycogen metabolism
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-
Glycolysis / Gluconeogenesis
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-
Glyoxylate and dicarboxylate metabolism
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-
guanine and guanosine salvage I
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-
PWY-6620
guanosine nucleotides degradation III
-
-
PWY-6608
hydroxycinnamic acid tyramine amides biosynthesis
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-
PWY-5474
IAA biosynthesis
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-
indole glucosinolate activation (intact plant cell)
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-
PWYQT-4477
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis III (bacteria)
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PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
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PWY-5025
inosine 5'-phosphate degradation
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-
PWY-5695
Inositol phosphate metabolism
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-
isoprene biosynthesis II (engineered)
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PWY-7391
Isoquinoline alkaloid biosynthesis
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-
ketogenesis
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-
PWY66-367
L-arginine degradation X (arginine monooxygenase pathway)
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-
ARGDEG-V-PWY
L-ascorbate biosynthesis IV (animals, D-glucuronate pathway)
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PWY3DJ-35471
L-ascorbate biosynthesis VI (plants, myo-inositol pathway)
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-
PWY-8142
L-ascorbate biosynthesis VIII (engineered pathway)
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PWY-7165
L-ascorbate degradation II (bacterial, aerobic)
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PWY-6961
L-ascorbate degradation III
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-
PWY-6960
L-phenylalanine biosynthesis I
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-
PHESYN
L-phenylalanine biosynthesis II
-
-
PWY-3462
L-tyrosine biosynthesis I
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-
TYRSYN
L-tyrosine biosynthesis II
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-
PWY-3461
L-tyrosine biosynthesis III
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-
PWY-6120
leucine metabolism
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-
Limonene and pinene degradation
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-
Linoleic acid metabolism
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-
lipid A biosynthesis
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-
lipid A-core biosynthesis (E. coli K-12)
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-
LIPA-CORESYN-PWY
lipid metabolism
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-
Lysine degradation
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-
macrolide antibiotic biosynthesis
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-
mannitol biosynthesis
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-
PWY-3881
mannitol degradation II
-
-
PWY-3861
melatonin degradation I
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-
PWY-6398
Metabolic pathways
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-
metabolism of disaccharids
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-
Metabolism of xenobiotics by cytochrome P450
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-
Methane metabolism
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-
methanofuran biosynthesis
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PWY-5254
methanol oxidation to formaldehyde IV
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-
PWY-5506
methyl ketone biosynthesis (engineered)
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-
PWY-7007
methylsalicylate degradation
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-
PWY-6184
mevalonate metabolism
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-
mevalonate pathway I (eukaryotes and bacteria)
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-
PWY-922
mevalonate pathway II (haloarchaea)
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PWY-6174
mevalonate pathway III (Thermoplasma)
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-
PWY-7524
mevalonate pathway IV (archaea)
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-
PWY-8125
Microbial metabolism in diverse environments
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-
molybdenum cofactor biosynthesis
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-
PWY-8171
NAD metabolism
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-
NADPH to cytochrome c oxidase via plastocyanin
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-
PWY-8271
Naphthalene degradation
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-
Nicotinate and nicotinamide metabolism
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-
nicotine degradation IV
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-
PWY66-201
nicotine degradation V
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-
PWY66-221
nitrate reduction X (dissimilatory, periplasmic)
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-
PWY0-1584
non-pathway related
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nucleoside and nucleotide degradation (archaea)
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-
PWY-5532
O-Antigen nucleotide sugar biosynthesis
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-
octopamine biosynthesis
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-
PWY-7297
oleandomycin activation/inactivation
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-
PWY-6972
oleate beta-oxidation
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-
PWY0-1337
oleate biosynthesis II (animals and fungi)
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PWY-5996
Oxidative phosphorylation
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-
oxidative phosphorylation
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-
Pantothenate and CoA biosynthesis
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-
Penicillin and cephalosporin biosynthesis
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-
pentachlorophenol degradation
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-
PCPDEG-PWY
Pentose and glucuronate interconversions
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-
Pentose phosphate pathway
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-
phenol degradation
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-
phenylacetate degradation (aerobic)
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-
phenylacetate degradation I (aerobic)
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PWY0-321
Phenylalanine metabolism
-
-
phenylalanine metabolism
-
-
Phenylalanine, tyrosine and tryptophan biosynthesis
-
-
Phenylpropanoid biosynthesis
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-
phenylpropanoid biosynthesis
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-
phenylpropanoid biosynthesis, initial reactions
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-
PWY1F-467
phosphate acquisition
-
-
PWY-6348
phospholipases
-
-
LIPASYN-PWY
Photosynthesis
-
-
photosynthesis
-
-
photosynthesis light reactions
-
-
PWY-101
phytate degradation I
-
-
PWY-4702
plasmalogen biosynthesis I (aerobic)
-
-
PWY-7782
plasmalogen degradation
-
-
PWY-7783
platensimycin biosynthesis
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-
PWY-8179
polyamine pathway
-
-
Polycyclic aromatic hydrocarbon degradation
-
-
Polyketide sugar unit biosynthesis
-
-
ppGpp biosynthesis
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-
ppGpp metabolism
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-
PPGPPMET-PWY
Propanoate metabolism
-
-
protein ubiquitination
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-
PWY-7511
pseudouridine degradation
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-
PWY-6019
purine deoxyribonucleosides degradation I
-
-
PWY-7179
purine deoxyribonucleosides degradation II
-
-
PWY-7179-1
Purine metabolism
-
-
purine metabolism
-
-
purine ribonucleosides degradation
-
-
PWY0-1296
pyrimidine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis II
-
-
PWY-7187
pyrimidine deoxyribonucleotides de novo biosynthesis III
-
-
PWY-6545
pyrimidine deoxyribonucleotides dephosphorylation
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-
PWY-7206
Pyrimidine metabolism
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-
reactive oxygen species degradation
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-
DETOX1-PWY-1
retinol biosynthesis
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-
PWY-6857
Retinol metabolism
-
-
Riboflavin metabolism
-
-
rosmarinic acid biosynthesis I
-
-
PWY-5048
Rubisco shunt
-
-
PWY-5723
saframycin A biosynthesis
-
-
PWY-7671
salicylate degradation I
-
-
PWY-6183
salidroside biosynthesis
-
-
PWY-6802
salinosporamide A biosynthesis
-
-
PWY-6627
sorbitol biosynthesis II
-
-
PWY-5530
spermidine biosynthesis I
-
-
BSUBPOLYAMSYN-PWY
spermine and spermidine degradation I
-
-
PWY-6117
Spodoptera littoralis pheromone biosynthesis
-
-
PWY-7656
sporopollenin precursors biosynthesis
-
-
PWY-6733
stachyose degradation
-
-
PWY-6527
Starch and sucrose metabolism
-
-
starch biosynthesis
-
-
PWY-622
starch degradation
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-
starch degradation III
-
-
PWY-6731
starch degradation V
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-
PWY-6737
stearate biosynthesis I (animals)
-
-
PWY-5972
stearate biosynthesis III (fungi)
-
-
PWY3O-355
Steroid hormone biosynthesis
-
-
streptomycin biosynthesis
-
-
PWY-5940
Streptomycin biosynthesis
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-
Styrene degradation
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-
suberin monomers biosynthesis
sucrose biosynthesis II
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-
PWY-7238
sucrose degradation II (sucrose synthase)
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-
PWY-3801
sucrose degradation IV (sucrose phosphorylase)
-
-
PWY-5384
sulfopterin metabolism
-
-
superoxide radicals degradation
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-
DETOX1-PWY
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
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-
PWY0-166
Terpenoid backbone biosynthesis
-
-
Thiamine metabolism
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-
trehalose degradation II (cytosolic)
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-
PWY0-1182
trehalose degradation V
-
-
PWY-2723
trehalose degradation VI (periplasmic)
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-
PWY0-1466
triacylglycerol degradation
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-
LIPAS-PWY
tRNA charging
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-
TRNA-CHARGING-PWY
Tropane, piperidine and pyridine alkaloid biosynthesis
-
-
Tryptophan metabolism
-
-
tunicamycin biosynthesis
-
-
PWY-7821
type I lipoteichoic acid biosynthesis (S. aureus)
-
-
PWY-7817
Tyrosine metabolism
-
-
tyrosine metabolism
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-
UDP-alpha-D-glucose biosynthesis
-
-
PWY-7343
valine metabolism
-
-
Valine, leucine and isoleucine degradation
-
-
valproate beta-oxidation
-
-
PWY-8182
vanillin biosynthesis I
-
-
PWY-5665
vitamin B1 metabolism
-
-
xanthine and xanthosine salvage
-
-
SALVPURINE2-PWY
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
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LITERATURE
UNIPROT
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GeneOntology No.
LITERATURE
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LINKS TO OTHER DATABASES (specific for Xanthomonas citri)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA