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Information on Organism Rattus rattus

black rat; house rat; Rattus rattoides (Pictet & Pictet, 1844); Rattus rattoides; Rattus rattus (Linnaeus, 1758); Rattus rattus; Rattus wroughtoni Hinton, 1919; Rattus wroughtoni; roof rat;

TaxTree of Organism Rattus rattus

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cellular organisms

can be found in Brenda

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(superkingdom)

Opisthokonta can be found in Brenda

can be found in Brenda

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(clade)

can be found in Brenda

BRENDA pathways

(kingdom)

can be found in Brenda

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(clade)

can be found in Brenda

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(clade)

Deuterostomia can be found in Brenda

can be found in Brenda

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(clade)

can be found in Brenda

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(phylum)

can be found in Brenda

(subphylum)

Vertebrata can be found in Brenda

can be found in Brenda

BRENDA pathways

(clade)

Gnathostomata can be found in Brenda

can be found in Brenda

BRENDA pathways

(clade)

Teleostomi can be found in Brenda

can be found in Brenda

(clade)

Euteleostomi can be found in Brenda

can be found in Brenda

BRENDA pathways

(clade)

Sarcopterygii can be found in Brenda

can be found in Brenda

BRENDA pathways

(superclass)

Dipnotetrapodomorpha can be found in Brenda

can be found in Brenda

(clade)

can be found in Brenda

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(clade)

can be found in Brenda

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(clade)

can be found in Brenda

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(class)

can be found in Brenda

BRENDA pathways

(clade)

can be found in Brenda

BRENDA pathways

(clade)

Boreoeutheria can be found in Brenda

can be found in Brenda

BRENDA pathways

(clade)

Euarchontoglires can be found in Brenda

can be found in Brenda

BRENDA pathways

(superorder)

can be found in Brenda

BRENDA pathways

(clade)

can be found in Brenda

BRENDA pathways

(order)

can be found in Brenda

BRENDA pathways

(suborder)

can be found in Brenda

BRENDA pathways

(clade)

can be found in Brenda

BRENDA pathways

(family)

can be found in Brenda

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(subfamily)

can be found in Brenda

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(genus)

can be found in Brenda

BRENDA pathways

(species)

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(R)-cysteate degradation

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PWY-6642

(S)-lactate fermentation to propanoate, acetate and hydrogen

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PWY-8086

(S)-reticuline biosynthesis I

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PWY-3581

1,5-anhydrofructose degradation

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PWY-6992

24-epi-campesterol, fucosterol, and clionasterol biosynthesis (diatoms)

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PWY-8238

3-(4-hydroxyphenyl)pyruvate biosynthesis

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PWY-5886

4-hydroxybenzoate biosynthesis I (eukaryotes)

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PWY-5754

5'-deoxyadenosine degradation II

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PWY-8131

acetone degradation I (to methylglyoxal)

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PWY-5451

acetone degradation III (to propane-1,2-diol)

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PWY-7466

aerobic respiration I (cytochrome c)

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PWY-3781

aerobic respiration II (cytochrome c) (yeast)

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PWY-7279

alanine metabolism

alanine metabolism

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Alanine, aspartate and glutamate metabolism

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Amaryllidacea alkaloids biosynthesis

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PWY-7826

Amino sugar and nucleotide sugar metabolism

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Aminobenzoate degradation

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ammonia oxidation II (anaerobic)

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P303-PWY

anaerobic energy metabolism (invertebrates, cytosol)

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PWY-7383

androgen and estrogen metabolism

androgen and estrogen metabolism

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arachidonate metabolites biosynthesis

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PWY-8397

Arachidonic acid metabolism

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arachidonic acid metabolism

arachidonic acid metabolism

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Arginine and proline metabolism

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Arginine biosynthesis

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arsenite to oxygen electron transfer

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PWY-4521

arsenite to oxygen electron transfer (via azurin)

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PWY-7429

aspartate and asparagine metabolism

aspartate and asparagine metabolism

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atromentin biosynthesis

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PWY-7518

autoinducer AI-2 biosynthesis I

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PWY-6153

autoinducer AI-2 biosynthesis II (Vibrio)

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PWY-6154

baicalein degradation (hydrogen peroxide detoxification)

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PWY-7214

beta-Alanine metabolism

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betanidin degradation

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PWY-5461

Bifidobacterium shunt

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P124-PWY

Biosynthesis of secondary metabolites

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Biotin metabolism

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Brassinosteroid biosynthesis

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bupropion degradation

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PWY66-241

C20 prostanoid biosynthesis

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PWY66-374

C4 and CAM-carbon fixation

C4 and CAM-carbon fixation

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C4 photosynthetic carbon assimilation cycle, NAD-ME type

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PWY-7115

C4 photosynthetic carbon assimilation cycle, PEPCK type

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PWY-7117

caffeine degradation III (bacteria, via demethylation)

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PWY-6538

Caffeine metabolism

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Carbon fixation in photosynthetic organisms

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Carbon fixation pathways in prokaryotes

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cholesterol biosynthesis

cholesterol biosynthesis

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cholesterol biosynthesis (algae, late side-chain reductase)

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PWY-8191

cholesterol biosynthesis (diatoms)

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PWY-8239

cholesterol biosynthesis (plants, early side-chain reductase)

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PWY18C3-1

cholesterol biosynthesis I

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PWY66-341

cholesterol biosynthesis II (via 24,25-dihydrolanosterol)

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PWY66-3

Citrate cycle (TCA cycle)

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citric acid cycle

citric acid cycle

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coenzyme M biosynthesis

coenzyme M biosynthesis

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coenzyme M biosynthesis II

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PWY-6643

creatine phosphate biosynthesis

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PWY-6158

Cysteine and methionine metabolism

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cysteine metabolism

cysteine metabolism

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cytosolic NADPH production (yeast)

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PWY-7268

denitrification

denitrification

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di-homo-gamma-linolenate metabolites biosynthesis

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PWY-8396

diethylphosphate degradation

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PWY-5491

Drug metabolism - cytochrome P450

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Drug metabolism - other enzymes

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Entner-Doudoroff pathway I

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PWY-8004

ethene biosynthesis III (microbes)

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PWY-6854

ethene biosynthesis V (engineered)

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PWY-7124

Fatty acid degradation

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Fe(II) oxidation

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PWY-6692

Folate biosynthesis

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formaldehyde assimilation I (serine pathway)

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PWY-1622

formaldehyde oxidation I

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RUMP-PWY

Fructose and mannose metabolism

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Galactose metabolism

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GDP-L-fucose biosynthesis II (from L-fucose)

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PWY-6

gluconeogenesis

gluconeogenesis

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gluconeogenesis I

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GLUCONEO-PWY

gluconeogenesis III

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PWY66-399

glutamate and glutamine metabolism

glutamate and glutamine metabolism

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Glutathione metabolism

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Glycerolipid metabolism

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Glycerophospholipid metabolism

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Glycolysis / Gluconeogenesis

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Glyoxylate and dicarboxylate metabolism

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glyoxylate cycle

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GLYOXYLATE-BYPASS

heterolactic fermentation

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P122-PWY

icosapentaenoate metabolites biosynthesis

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PWY-8399

incomplete reductive TCA cycle

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P42-PWY

indole-3-acetate biosynthesis II

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PWY-581

indole-3-acetate biosynthesis VI (bacteria)

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TRPIAACAT-PWY

Isoquinoline alkaloid biosynthesis

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justicidin B biosynthesis

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PWY-6824

L-alanine biosynthesis II

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ALANINE-SYN2-PWY

L-alanine degradation II (to D-lactate)

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ALACAT2-PWY

L-alanine degradation III

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ALANINE-DEG3-PWY

L-alanine degradation V (oxidative Stickland reaction)

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PWY-8189

L-alanine degradation VI (reductive Stickland reaction)

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PWY-8188

L-asparagine degradation III (mammalian)

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ASPARAGINE-DEG1-PWY-1

L-aspartate biosynthesis

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ASPARTATESYN-PWY

L-aspartate degradation I

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ASPARTATE-DEG1-PWY

L-cysteine biosynthesis VI (reverse transsulfuration)

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PWY-I9

L-glutamate degradation II

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GLUTDEG-PWY

L-histidine degradation V

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PWY-5031

L-lactaldehyde degradation

L-lactaldehyde degradation

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L-phenylalanine biosynthesis I

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PHESYN

L-phenylalanine degradation II (anaerobic)

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ANAPHENOXI-PWY

L-phenylalanine degradation III

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PWY-5079

L-phenylalanine degradation IV (mammalian, via side chain)

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PWY-6318

L-phenylalanine degradation VI (reductive Stickland reaction)

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PWY-8014

L-tryptophan degradation IV (via indole-3-lactate)

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TRPKYNCAT-PWY

L-tryptophan degradation VIII (to tryptophol)

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PWY-5081

L-tryptophan degradation XIII (reductive Stickland reaction)

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PWY-8017

L-tyrosine biosynthesis I

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TYRSYN

L-tyrosine degradation I

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TYRFUMCAT-PWY

L-tyrosine degradation II

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PWY-5151

L-tyrosine degradation III

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PWY3O-4108

L-tyrosine degradation IV (to 4-methylphenol)

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PWY-7514

L-tyrosine degradation V (reductive Stickland reaction)

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PWY-8016

lactate fermentation

lactate fermentation

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Linoleic acid metabolism

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lipid metabolism

lipid metabolism

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luteolin triglucuronide degradation

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PWY-7445

malate/L-aspartate shuttle pathway

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MALATE-ASPARTATE-SHUTTLE-PWY

matairesinol biosynthesis

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PWY-5466

melatonin degradation I

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PWY-6398

Metabolic pathways

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metabolism of disaccharids

metabolism of disaccharids

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Metabolism of xenobiotics by cytochrome P450

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Methane metabolism

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methionine metabolism

methionine metabolism

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methylaspartate cycle

Microbial metabolism in diverse environments

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mixed acid fermentation

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FERMENTATION-PWY

mRNA capping I

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PWY-7375

NAD metabolism

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NAD phosphorylation and dephosphorylation

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NADPHOS-DEPHOS-PWY

NAD salvage pathway III (to nicotinamide riboside)

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NAD-BIOSYNTHESIS-II

NAD(P)/NADPH interconversion

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PWY-5083

NADPH to cytochrome c oxidase via plastocyanin

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PWY-8271

nicotine degradation IV

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PWY66-201

nicotine degradation V

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PWY66-221

nitrate reduction I (denitrification)

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DENITRIFICATION-PWY

nitrate reduction VII (denitrification)

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PWY-6748

nitrifier denitrification

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PWY-7084

nitrite-dependent anaerobic methane oxidation

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PWY-6523

Nitrogen metabolism

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nitrogen remobilization from senescing leaves

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PWY-6549

nocardicin A biosynthesis

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PWY-7797

non-pathway related

non-pathway related

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Novobiocin biosynthesis

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Other glycan degradation

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Oxidative phosphorylation

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oxidative phosphorylation

oxidative phosphorylation

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Pantothenate and CoA biosynthesis

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partial TCA cycle (obligate autotrophs)

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PWY-5913

Pentose phosphate pathway

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pentose phosphate pathway

pentose phosphate pathway

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pentose phosphate pathway (oxidative branch) I

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OXIDATIVEPENT-PWY

Phenylalanine metabolism

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Phenylalanine, tyrosine and tryptophan biosynthesis

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Phenylpropanoid biosynthesis

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phosphate acquisition

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PWY-6348

photosynthesis

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phytosterol biosynthesis (plants)

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PWY-2541

Propanoate metabolism

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Purine metabolism

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Pyrimidine metabolism

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pyrimidine metabolism

pyrimidine metabolism

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pyruvate fermentation to (R)-lactate

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PWY-8274

pyruvate fermentation to (S)-lactate

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PWY-5481

pyruvate fermentation to propanoate I

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P108-PWY

Pyruvate metabolism

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reactive oxygen species degradation

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DETOX1-PWY-1

reductive TCA cycle I

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P23-PWY

reductive TCA cycle II

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PWY-5392

retinol biosynthesis

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PWY-6857

Retinol metabolism

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Riboflavin metabolism

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rosmarinic acid biosynthesis I

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PWY-5048

S-adenosyl-L-methionine salvage I

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PWY-6151

S-methyl-5'-thioadenosine degradation I

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PWY-6754

S-methyl-5'-thioadenosine degradation IV

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PWY0-1391

sesamin biosynthesis

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PWY-5469

Starch and sucrose metabolism

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Steroid biosynthesis

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Steroid hormone biosynthesis

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sterol biosynthesis (methylotrophs)

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PWY-8026

sterol:steryl ester interconversion (yeast)

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PWY-7424

succinate to chytochrome c oxidase via cytochrome c6

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PWY1YI0-2

succinate to cytochrome c oxidase via plastocyanin

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PWY1YI0-3

sucrose degradation III (sucrose invertase)

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PWY-621

sucrose degradation V (sucrose alpha-glucosidase)

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PWY66-373

sulfolactate degradation III

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PWY-6638

sulfopterin metabolism

sulfopterin metabolism

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superoxide radicals degradation

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DETOX1-PWY

superpathway of fermentation (Chlamydomonas reinhardtii)

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PWY4LZ-257

superpathway of glucose and xylose degradation

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PWY-6901

superpathway of glycolysis and the Entner-Doudoroff pathway

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GLYCOLYSIS-E-D

superpathway of glyoxylate cycle and fatty acid degradation

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PWY-561

TCA cycle I (prokaryotic)

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TCA

TCA cycle II (plants and fungi)

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PWY-5690

TCA cycle III (animals)

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PWY66-398

TCA cycle IV (2-oxoglutarate decarboxylase)

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P105-PWY

TCA cycle V (2-oxoglutarate synthase)

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PWY-6969

TCA cycle VI (Helicobacter)

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REDCITCYC

TCA cycle VII (acetate-producers)

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PWY-7254

TCA cycle VIII (Chlamydia)

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TCA-1

theophylline degradation

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PWY-6999

Thiamine metabolism

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thymine degradation

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PWY-6430

triacylglycerol degradation

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LIPAS-PWY

tRNA processing

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PWY0-1479

Tropane, piperidine and pyridine alkaloid biosynthesis

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Tryptophan metabolism

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tryptophan metabolism

tryptophan metabolism

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Tyrosine metabolism

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Ubiquinone and other terpenoid-quinone biosynthesis

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uracil degradation I (reductive)

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PWY-3982

vancomycin resistance I

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PWY-6454

vanillin biosynthesis I

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PWY-5665

vitamin B1 metabolism

vitamin B1 metabolism

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vitamin K-epoxide cycle

xanthommatin biosynthesis

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PWY-8249

zymosterol biosynthesis

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PWY-6074

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Manually annotated by BRENDA team

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serum, plasma, leukocytes

171922, 171924, 171931, 171933, 171935

Manually annotated by BRENDA team

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Manually annotated by BRENDA team

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Manually annotated by BRENDA team

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171917, 171973, 172056, 172069, 661521

Manually annotated by BRENDA team

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Manually annotated by BRENDA team

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171917, 171924, 171933, 171935, 171973, 172056, 172057, 172069, 661521

Manually annotated by BRENDA team

large intestine

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Manually annotated by BRENDA team

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171933, 172056, 172057, 172069, 661521

Manually annotated by BRENDA team

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-

Manually annotated by BRENDA team

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171933, 171935, 172056, 172057

Manually annotated by BRENDA team

prostate gland ventral lobe

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Manually annotated by BRENDA team

small intestine

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171933, 171973, 172056, 661521

Manually annotated by BRENDA team

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171922, 172056, 172069

Manually annotated by BRENDA team

submaxillary gland

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Manually annotated by BRENDA team

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172056, 172069, 661521

Manually annotated by BRENDA team

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Manually annotated by BRENDA team

white adipose tissue

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Manually annotated by BRENDA team

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Manually annotated by BRENDA team

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Manually annotated by BRENDA team

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NCBI: Taxonomy, PubMed, Genome

SILVA: 16S/18S rRNA, 23S/28S rRNA

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Release 2023.1 (January 2023)