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Information on EC 3.4.24.B4 - matrix metalloproteinase-13 and Organism(s) Mus musculus and UniProt Accession P33435

for references in articles please use BRENDA:EC3.4.24.B4
preliminary BRENDA-supplied EC number
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EC Tree
     3 Hydrolases
         3.4 Acting on peptide bonds (peptidases)
             3.4.24 Metalloendopeptidases
                3.4.24.B4 matrix metalloproteinase-13
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This record set is specific for:
Mus musculus
UNIPROT: P33435
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Word Map
The taxonomic range for the selected organisms is: Mus musculus
The enzyme appears in selected viruses and cellular organisms
Reaction Schemes
proteolytic degradation of proteins
Synonyms
mmp-13, mmp13, collagenase-3, matrix metalloproteinase-13, matrix metalloproteinase 13, collagenase 3, mmp13a, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
M10.013
Merops-ID
matrix metalloproteinase-13
-
collagenase
-
-
collagenase 3
-
-
collagenase-3
-
-
matrix metalloproteinase 13
-
-
matrix metalloproteinase-13
-
-
MMP13
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
proteolytic degradation of proteins
show the reaction diagram
structure of the catalytic domain
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hydrolysis of peptide bond
-
CAS REGISTRY NUMBER
COMMENTARY hide
175449-82-8
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
aggrecan + H2O
?
show the reaction diagram
-
-
?
cartilage + H2O
?
show the reaction diagram
-
-
?
collagen type II + H2O
?
show the reaction diagram
-
-
?
Fibronectin + H2O
?
show the reaction diagram
-
-
?
protein + H2O
peptides
show the reaction diagram
-
-
?
Y(NO2)GGPAGLYEK(Abz)G + H2O
Y(NO2)GGPAG + LYEK(Abz)G
show the reaction diagram
FRET substrate, cleavage rate is 0.468 nmoles/second
-
-
?
Y(NO2)GPLGMRGLK(Abz)G + H2O
Y(NO2)GPLG + MRGLK(Abz)G
show the reaction diagram
FRET substrate, cleavage rate is 0.006 nmoles/second
-
-
?
Collagen IV + H2O
?
show the reaction diagram
-
-
-
-
?
Collagen type I + H2O
?
show the reaction diagram
collagen type II + H2O
?
show the reaction diagram
-
-
-
-
?
Gelatin + H2O
?
show the reaction diagram
Type I collagen + H2O
?
show the reaction diagram
type II collagen + H2O
?
show the reaction diagram
type III collagen + H2O
?
show the reaction diagram
type X collagen + H2O
?
show the reaction diagram
-
-
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
protein + H2O
peptides
show the reaction diagram
-
-
?
Collagen IV + H2O
?
show the reaction diagram
-
-
-
-
?
Collagen type I + H2O
?
show the reaction diagram
-
Interstitial fibers of collagen type I in the plaque can be degraded by MMP13 specifically. MMP13 is capable of degrading collagen type I in the upstream atherosclerotic lesions
-
-
?
Gelatin + H2O
?
show the reaction diagram
-
-
-
-
?
Type I collagen + H2O
?
show the reaction diagram
type II collagen + H2O
?
show the reaction diagram
type III collagen + H2O
?
show the reaction diagram
type X collagen + H2O
?
show the reaction diagram
-
-
-
-
?
additional information
?
-
-
MMP-13 degrades intact collagen and participates in situations where rapid and effective remodeling of collagenous extracellular matrix is required
-
-
?
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Zn2+
His201, His211, and His 205 are involved in metal ion binding, geometry from crystal structure
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
hydroxamate inhibitor RS-113456
a diphenyl ether sulfon compound, complexing of the enzyme via His205 and Glu202
-
AG1296
-
a platelet-derived growth factor receptor inhibitor, shows several physiological effects, overview
BB94
-
a broadspectrum MMP inhibitor, significantly inhibits keratinocyte migration
CL 82198
-
specific inhibitor
CP-471474
-
-
N-hydroxy-1-(4-methoxyphenyl)sulfonyl-4-(4-biphenylcarbonyl)piperazine-2-carboxamide
-
-
N-[[(4,5-dihydro-5-thioxo-1,3,4-thiadiazol-2-yl)amino]carbonyl]-L-phenylalanine
-
-
PD-331179
-
-
RS 102,481
-
a small molecule preferential inhibitor of MMP13
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
angiotensin II
-
-
additional information
-
the prodomain of MMP13 determines autoactivation of MMP13 and intracellular degradation of MMP13
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.00584
Y(NO2)GGPAGLYEK(Abz)G
pH 7.5, 37°C
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
4.34
Y(NO2)GGPAGLYEK(Abz)G
pH 7.5, 37°C
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.4
-
assay at
7.5
-
assay at
7.6
-
assay at
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
22
-
assay at room temperature
37
-
assay at
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
hypertrophic, enzyme expression during bone development
Manually annotated by BRENDA team
enzyme expression during bone development
Manually annotated by BRENDA team
enzyme expression during bone development
Manually annotated by BRENDA team
-
expression of MMP13 in tumors
Manually annotated by BRENDA team
-
myoblast cell line, expression of enzyme and tissue inhibitor of matrix metalloproteinase, TIMP-1, is regulated by Wnt signaling combined with bone morphogenic protein BMP-2 in osteoblastic differentiation
Manually annotated by BRENDA team
-
mammary tumor-derived cell line
Manually annotated by BRENDA team
-
scar-associated macrophages are a major source of hepatic matrix metalloproteinase-13
Manually annotated by BRENDA team
-
MMP-13 expression in the tissues around in vivo developing oral sulcus at E11, 12, and 13, immunohistochemic analysis
Manually annotated by BRENDA team
-
overexpression of MMP13
Manually annotated by BRENDA team
-
MMP-13 expression is negligible in the normal unwounded skin at day 0, but it increases on days 1 to 7 upon wounding, diminishes on day 14 and disappears on day 28
Manually annotated by BRENDA team
-
induced tumors, stromal MMP13 is associated with vascular endothelial growth factor receptor-2 on endothelial cells in invasive areas. Tumour invasion was downregulated in Mmp13-/- animals. Kinetics of angiogenesis and tumour growth in surface transplants, overview
Manually annotated by BRENDA team
-
mesenchymal
Manually annotated by BRENDA team
additional information
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
MMP-13 is secreted
-
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
physiological function
neuropathy is reversed upon injection of MMP13 inhibitor into obese mice on a high-fat/high sugar diet
malfunction
-
knockdown of MMP13 strongly enhances pigmentation of melanocytes
metabolism
physiological function
additional information
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
MMP13_MOUSE
472
0
54182
Swiss-Prot
-
POSTTRANSLATIONAL MODIFICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
proteolytic modification
-
the prodomain of MMP13 determines autoactivation of MMP13 and intracellular degradation of MMP13
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
enzyme complexed with a hydroxamate inhibitor, hanging-drop vapour diffusion method, 17 mg/ml protein in 10 mM HEPES, pH 7.5, with ammonium sufate to saturation, 18°C, 60 days, X-ray diffraction structure determination at 2.0 A resolution, and analysis
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant from Escherichia coli
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
overexpression in Escherichia coli BL21(DE3)
matrix metalloproteinase gene MMP13 and the antiapoptotic genes Birc2, cIAP1, and Birc3, cIAP2, form an amplicon located on chromosome 9A1, and show elevated expression in osteosarcomas
-
realtime RT-PCR MMP13 expression analysis, overview
-
reverse transcription-PCR expression analysis of MMP13 in wild-type and mutant mice, overview
-
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
MMP13 is a direct target of osteoblast-specific transcription factor Osx in osteoblasts. Calvaria obtained from Osx-null embryos display dramatic reductions in MMP13 expression compared to wild-type calvaria. Stable overexpression of Osx stimulates MMP13 expression in C2C12 mesenchymal cells. Inhibition of Osx expression by siRNA leads to downregulation of MMP13 expression. Osx directly activates a 1 kb fragment of the MMP13 promoter in a dose-dependent manner
1,25-dihydroxy vitamin D3, 1,25D3, and T3 hormones induce MMP-13 expression in osteoblasts and are important for enzyme regulation in bone. The activation of MMP-13 expression by T3 is in a competitive balance with the regulation of osteocalcin expression, overview. PKA inhibitor HA1004 stimulates 1,25D3 activation of MMP-13 expression and reduces the stimulation by T3
-
after epidermal growth factor stimulation MMP13 is up-regulated
-
BMP-2 siRNA induces a 60% increase in the expression of MMP-13 protein and a marked increase in the staining intensity for MMP-13 in the epithelial region of the BMP-2 siRNA treated mandibles
-
HDAC4 represses MMP-13 transcription in osteoblastic cells, and parathyroid hormone controls this repression
-
keratinocytes transfected with siRNA for MMP-13 exhibit downregulation of mRNA and protein expression of the MMP
-
mechanical strain induction of MMP-13 by high mechanical forces, with receptor of platelet-derived growth factor receptor alpha, PDGFR-alpha, as a potential mechanoreceptor in the MMP-13 induction, inhibited by platelet-derived growth factor receptor inhibitor AG1296, overview. The receptor performs autophosphorylation under mechanical stress
-
MMP13 expression is transiently induced by wounding, MMP-13 expression is negligible in the normal unwounded skin at day 0, but it increases on days 1 to 7 upon wounding, diminishes on day 14 and disappears on day 28
-
transfection of chondrocytes with adenovirus overexpressing constitutive active ALK1 increased MMP-13 expression, while small interfering RNA against ALK1 decreases MMP-13 expression to nondetectable levels
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
medicine
in a collagen-induced arthritis model, MMP-12 and MMP-13 activity probes based on derived from substrates Y(NO2)GPLG-LEEAK(Abz)G-NH2 and Y(NO2)GPAG-LYEK(Abz)G-NH2, respectively, discriminate between the activities of the 2 enzymes. In the disease model, MMP13 activity probe activation increases gradually after disease onset and correlates with disease severity over a longer period of 15 days
medicine
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Botos, I.; Meyer, E.; Swanson, S.M.; Lemaitre, V.; Eeckhout, Y.; Meyer, E.F.
Structure of recombinant mouse collagenase-3 (MMP-13)
J. Mol. Biol.
292
837-844
1999
Mus musculus (P33435), Mus musculus
Manually annotated by BRENDA team
Nakashima, A.; Tamura, M.
Regulation of matrix metalloproteinase-13 and tissue inhibitor of matrix metalloproteinase-1 gene expression by WNT3A and bone morphogenetic protein-2 in osteoblastic differentiation
Front. Biosci.
11
1667-1678
2006
Mus musculus
Manually annotated by BRENDA team
Inada, M.; Wang, Y.; Byrne, M.H.; Rahman, M.U.; Miyaura, C.; Lopez-Otin, C.; Krane, S.M.
Critical roles for collagenase-3 (Mmp13) in development of growth plate cartilage and in endochondral ossification
Proc. Natl. Acad. Sci. USA
101
17192-17197
2004
Mus musculus
Manually annotated by BRENDA team
Fallowfield, J.A.; Mizuno, M.; Kendall, T.J.; Constandinou, C.M.; Benyon, R.C.; Duffield, J.S.; Iredale, J.P.
Scar-associated macrophages are a major source of hepatic matrix metalloproteinase-13 and facilitate the resolution of murine hepatic fibrosis
J. Immunol.
178
5288-5295
2007
Mus musculus
Manually annotated by BRENDA team
Mukhin, Y.V.; Gooz, M.; Raymond, J.R.; Garnovskaya, M.N.
Collagenase-2 and -3 mediate epidermal growth factor receptor transactivation by bradykinin B2 receptor in kidney cells
J. Pharmacol. Exp. Ther.
318
1033-1043
2006
Mus musculus
Manually annotated by BRENDA team
Behonick, D.J.; Xing, Z.; Lieu, S.; Buckley, J.M.; Lotz, J.C.; Marcucio, R.S.; Werb, Z.; Miclau, T.; Colnot, C.
Role of matrix metalloproteinase 13 in both endochondral and intramembranous ossification during skeletal regeneration
PLoS ONE
2
e1150
2007
Mus musculus
Manually annotated by BRENDA team
Lausch, E.; Keppler, R.; Hilbert, K.; Cormier-Daire, V.; Nikkel, S.; Nishimura, G.; Unger, S.; Spranger, J.; Superti-Furga, A.; Zabel, B.
Mutations in MMP9 and MMP13 determine the mode of inheritance and the clinical spectrum of metaphyseal anadysplasia
Am. J. Hum. Genet.
85
168-178
2009
Mus musculus, Homo sapiens (P45452), Homo sapiens
Manually annotated by BRENDA team
Hattori, N.; Mochizuki, S.; Kishi, K.; Nakajima, T.; Takaishi, H.; DArmiento, J.; Okada, Y.
MMP-13 plays a role in keratinocyte migration, angiogenesis, and contraction in mouse skin wound healing
Am. J. Pathol.
175
533-546
2009
Mus musculus
Manually annotated by BRENDA team
Fukui, T.; Suga, T.; Iida, R.H.; Morito, M.; Luan, X.; Diekwisch, T.G.; Nakamura, Y.; Yamane, A.
BMP-2 regulates the formation of oral sulcus in mouse tongue by altering the balance between TIMP-1 and MMP-13
Anat. Rec. (Hoboken)
293
1408-1415
2010
Mus musculus
Manually annotated by BRENDA team
Cheng, C.; Tempel, D.; van Haperen, R.; van Damme, L.; Alguer, M.; Krams, R.; de Crom, R.
Activation of MMP8 and MMP13 by angiotensin II correlates to severe intra-plaque hemorrhages and collagen breakdown in atherosclerotic lesions with a vulnerable phenotype
Atherosclerosis
204
26-33
2009
Mus musculus
Manually annotated by BRENDA team
Ma, O.; Cai, W.W.; Zender, L.; Dayaram, T.; Shen, J.; Herron, A.J.; Lowe, S.W.; Man, T.K.; Lau, C.C.; Donehower, L.A.
MMP13, Birc2 (cIAP1), and Birc3 (cIAP2), amplified on chromosome 9, collaborate with p53 deficiency in mouse osteosarcoma progression
Cancer Res.
69
2559-2567
2009
Homo sapiens, Mus musculus
Manually annotated by BRENDA team
Nannuru, K.C.; Futakuchi, M.; Varney, M.L.; Vincent, T.M.; Marcusson, E.G.; Singh, R.K.
Matrix metalloproteinase (MMP)-13 regulates mammary tumor-induced osteolysis by activating MMP9 and transforming growth factor-beta signaling at the tumor-bone interface
Cancer Res.
70
3494-3504
2010
Mus musculus
Manually annotated by BRENDA team
Lederle, W.; Hartenstein, B.; Meides, A.; Kunzelmann, H.; Werb, Z.; Angel, P.; Mueller, M.M.
MMP13 as a stromal mediator in controlling persistent angiogenesis in skin carcinoma
Carcinogenesis
31
1175-1184
2010
Mus musculus
Manually annotated by BRENDA team
Lecomte, J.; Louis, K.; Detry, B.; Blacher, S.; Lambert, V.; Bekaert, S.; Munaut, C.; Paupert, J.; Blaise, P.; Foidart, J.M.; Rakic, J.M.; Krane, S.M.; Noel, A.
Bone marrow-derived mesenchymal cells and MMP13 contribute to experimental choroidal neovascularization
Cell. Mol. Life Sci.
68
677-686
2011
Homo sapiens (P45452), Homo sapiens, Mus musculus, Mus musculus C57BL/6
Manually annotated by BRENDA team
Varga, F.; Rumpler, M.; Spitzer, S.; Karlic, H.; Klaushofer, K.
Osteocalcin attenuates T3- and increases vitamin D3-induced expression of MMP-13 in mouse osteoblasts
Endocr. J.
56
441-450
2009
Mus musculus
Manually annotated by BRENDA team
Mak, I.W.; Seidlitz, E.P.; Cowan, R.W.; Turcotte, R.E.; Popovic, S.; Wu, W.C.; Singh, G.; Ghert, M.
Evidence for the role of matrix metalloproteinase-13 in bone resorption by giant cell tumor of bone
Hum. Pathol.
41
1320-1329
2010
Homo sapiens, Mus musculus
Manually annotated by BRENDA team
Yang, C.M.; Hsieh, H.L.; Yao, C.C.; Hsiao, L.D.; Tseng, C.P.; Wu, C.B.
Protein kinase C-delta transactivates platelet-derived growth factor receptor-alpha in mechanical strain-induced collagenase 3 (matrix metalloproteinase-13) expression by osteoblast-like cells
J. Biol. Chem.
284
26040-26050
2009
Mus musculus
Manually annotated by BRENDA team
Shimizu, E.; Selvamurugan, N.; Westendorf, J.J.; Olson, E.N.; Partridge, N.C.
HDAC4 represses matrix metalloproteinase-13 transcription in osteoblastic cells, and parathyroid hormone controls this repression
J. Biol. Chem.
285
9616-9626
2010
Mus musculus, Rattus norvegicus
Manually annotated by BRENDA team
Blaney Davidson, E.N.; Remst, D.F.; Vitters, E.L.; van Beuningen, H.M.; Blom, A.B.; Goumans, M.J.; van den Berg, W.B.; van der Kraan, P.M.
Increase in ALK1/ALK5 ratio as a cause for elevated MMP-13 expression in osteoarthritis in humans and mice
J. Immunol.
182
7937-7945
2009
Homo sapiens, Mus musculus
Manually annotated by BRENDA team
Li, J.J.; Johnson, A.R.
Selective MMP13 inhibitors
Med. Res. Rev.
31
863-894
2011
Homo sapiens, Mus musculus, Rattus norvegicus
Manually annotated by BRENDA team
Meierjohann, S.; Hufnagel, A.; Wende, E.; Kleinschmidt, M.A.; Wolf, K.; Friedl, P.; Gaubatz, S.; Schartl, M.
MMP13 mediates cell cycle progression in melanocytes and melanoma cells: in vitro studies of migration and proliferation
Mol. Cancer
9
201
2010
Homo sapiens, Mus musculus
Manually annotated by BRENDA team
Lim, N.; Meinjohanns, E.; Bou-Gharios, G.; Gompels, L.; Nuti, E.; Rossello, A.; Devel, L.; Dive, V.; Meldal, M.; Nagase, H.
In vivo imaging of matrix metalloproteinase 12 and matrix metalloproteinase 13 activities in the mouse model of collagen-induced arthritis
Arthritis Rheumatol.
66
589-598
2014
Mus musculus (P33435), Mus musculus
Manually annotated by BRENDA team
Zhang, C.; Tang, W.; Li, Y.
Matrix metalloproteinase 13 (MMP13) is a direct target of osteoblast-specific transcription factor osterix (Osx) in osteoblasts
PLoS ONE
7
e50525
2012
Mus musculus (P33435)
Manually annotated by BRENDA team
Waldron, A.L.; Schroder, P.A.; Bourgon, K.L.; Bolduc, J.K.; Miller, J.L.; Pellegrini, A.D.; Dubois, A.L.; Blaszkiewicz, M.; Townsend, K.L.; Rieger, S.
Oxidative stress-dependent MMP-13 activity underlies glucose neurotoxicity
J. Diabetes Complicat.
32
249-257
2018
Danio rerio, Mus musculus (P33435)
Manually annotated by BRENDA team