3.4.22.B79: nsP2 protease
This is an abbreviated version!
For detailed information about nsP2 protease, go to the full flat file.
Word Map on EC 3.4.22.B79
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3.4.22.B79
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polyproteins
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viruses
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alphavirus
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chikungunya
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replicase
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sindbis
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chikv
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nsp1
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semliki
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subgenomic
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positive-stranded
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venezuelan
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hp-prrsv
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papain-like
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noncytopathic
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plus-stranded
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positive-sense
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minus-strand
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analysis
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3c-like
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drug development
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autoprotease
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medicine
- 3.4.22.B79
- polyproteins
- viruses
- alphavirus
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chikungunya
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replicase
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sindbis
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chikv
- nsp1
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semliki
-
subgenomic
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positive-stranded
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venezuelan
-
hp-prrsv
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papain-like
-
noncytopathic
-
plus-stranded
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positive-sense
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minus-strand
- analysis
-
3c-like
- drug development
-
autoprotease
- medicine
Reaction
the enzymes processes the alphavirus nonstructural polyprotein (nsP1234). The enzyme from Venezuelan equine encephalitis virus shwos a preferens for Gly or Als in position P1', Ala or Cys in P1, and Gly in P2 =
Synonyms
non-structural polyprotein 2, nonstructural polyprotein, nonstructural protein, nonstructural protein 2, ns polyprotein, nsP2, nsP2 protease, nsp2 protein, nsp2pro, p39 nsp2 protease
ECTree
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Substrates Products
Substrates Products on EC 3.4.22.B79 - nsP2 protease
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REACTION DIAGRAM
4-(4-dimethylaminophenyl-azo)benzoyl-DRAGGYIFSE-Edans + H2O
4-(4-dimethylaminophenyl-azo)benzoyl-DRAGG + YIFSE-Edans
4-[[4-(dimethylamino)phenyl]-azo]benzoyl-DELRLDRAGGYIFSS-Edans + H2O
4-[[4-(dimethylamino)phenyl]-azo]benzoyl-DELRLDRAGG + YIFSS-Edans
4-[[4-(dimethylamino)phenyl]-azo]benzoyl-LDRAGGYI-Edans + H2O
4-[[4-(dimethylamino)phenyl]-azo]benzoyl-LDRAGG + YI-Edans
DABCYL-Arg-Ala-Gly-Gly-Tyr-Ile-Phe-Ser-(Glu-EDANS) + H2O
DABCYL-Arg-Ala-Gly-Gly + Tyr-Ile-Phe-Ser-(Glu-EDANS)
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Sindbis virus core protein + H2O
Hydrolyzed Sindbis core protein
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thioredoxin fusion protein + H2O
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fusion protein is cleaved with greater efficiency by nsp2pro than the original MBP-NusG-His6 substrate with the shorter linker
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Venezuelan equine encephalitis virus p1/p2 + H2O
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Venezuelan equine encephalitis virus p3/p4 + H2O
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2-(N-methylamino)benzoyl-AGA + GIIETk(Dnp)
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2-(N-methylamino)benzoyl-AGAGIIETk(Dnp) + H2O
2-(N-methylamino)benzoyl-AGA + GIIETk(Dnp)
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corresponds to cleavage site P1/2 of the polyprotein
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?
2-(N-methylamino)benzoyl-AGAGIIETk(Dnp) + H2O
2-(N-methylamino)benzoyl-AGA + GIIETk(Dnp)
Chikungunya virus ECSA E1:226V
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?
2-(N-methylamino)benzoyl-AGC + GIIETk(Dnp)
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2-(N-methylamino)benzoyl-AGCGIIETk(Dnp) + H2O
2-(N-methylamino)benzoyl-AGC + GIIETk(Dnp)
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corresponds to cleavage site P2/3 of the polyprotein
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?
2-(N-methylamino)benzoyl-AGCGIIETk(Dnp) + H2O
2-(N-methylamino)benzoyl-AGC + GIIETk(Dnp)
Chikungunya virus ECSA E1:226V
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2-(N-methylamino)benzoyl-AGG + GIIETk(Dnp)
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2-(N-methylamino)benzoyl-AGGGIIETk(Dnp) + H2O
2-(N-methylamino)benzoyl-AGG + GIIETk(Dnp)
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corresponds to cleavage site P3/4 of the polyprotein
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?
2-(N-methylamino)benzoyl-AGGGIIETk(Dnp) + H2O
2-(N-methylamino)benzoyl-AGG + GIIETk(Dnp)
Chikungunya virus ECSA E1:226V
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?
4-(4-dimethylaminophenyl-azo)benzoyl-DRAGG + YIFSE-Edans
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4-(4-dimethylaminophenyl-azo)benzoyl-DRAGGYIFSE-Edans + H2O
4-(4-dimethylaminophenyl-azo)benzoyl-DRAGG + YIFSE-Edans
Chikungunya virus S27-African prototype
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?
4-[[4-(dimethylamino)phenyl]-azo]benzoyl-DELRLDRAGG + YIFSS-Edans
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4-[[4-(dimethylamino)phenyl]-azo]benzoyl-DELRLDRAGGYIFSS-Edans + H2O
4-[[4-(dimethylamino)phenyl]-azo]benzoyl-DELRLDRAGG + YIFSS-Edans
Chikungunya virus ECSA
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?
4-[[4-(dimethylamino)phenyl]-azo]benzoyl-LDRAGG + YI-Edans
peptide representing the 1/2 site of the polyprotein. Substrate is processed by nsP2, but the reaction velocity cannot be saturated
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4-[[4-(dimethylamino)phenyl]-azo]benzoyl-LDRAGGYI-Edans + H2O
4-[[4-(dimethylamino)phenyl]-azo]benzoyl-LDRAGG + YI-Edans
Chikungunya virus ECSA
peptide representing the 1/2 site of the polyprotein. Substrate is processed by nsP2, but the reaction velocity cannot be saturated
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chikungunya nsP2 protease possesses different substrate specificity to the canonical alphavirus nsP2 polyprotein cleavage specificity
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additional information
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protease readily cleaves GFP-10:5-Trx substrates containing short P10-P5' sequences originating from the 1/2 and 3/4 cleavage sites of the polyprotein, but not from the 2/3 site. Enzyme prefers the 3/4 substrate for cleavage in trans
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additional information
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Chikungunya virus ECSA
protease readily cleaves GFP-10:5-Trx substrates containing short P10-P5' sequences originating from the 1/2 and 3/4 cleavage sites of the polyprotein, but not from the 2/3 site. Enzyme prefers the 3/4 substrate for cleavage in trans
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additional information
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Chikungunya virus ECSA E1:226V
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chikungunya nsP2 protease possesses different substrate specificity to the canonical alphavirus nsP2 polyprotein cleavage specificity
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additional information
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the catalytic dyad is composed of Cys-481 and His-558
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additional information
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enzyme is critically involved in development of cytopathic effect. Cytotoxic effect of enzyme is due to its ability to cause transcriptional shutoff
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additional information
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after negative-strand synthesis, the ns protein appears to irreversibly change conformation and forms mature replication complexes, in spite of the lack of ns polyprotein cleavage. Complete processing of the ns polyprotein is not an absolute prerequisite for Sindbis virus replication. Inability of the viruses with unprocessed polyprotein to productively replicate in the interferon-competent cells and in the cells of mosquito origin is an additional, important factor in ns polyprotein cleavage development. It leads to the release of nsP2 protein, which plays a critical role in inhibiting the cellular antiviral response
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additional information
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recombinant Sindbis viruses encoding nsP2/GFP chimeric protein are capable of growth in tissue culture and interfering with cellular functions. GFP insertion after the eighth amino acid of nsP2 in the SIN/nsP2GFP/8 virus blocks the processing of one of the cleavage sites. In the SIN/nsP2GFP/472 virus, the GFP insertion causes the formation process for nsP2/GFP to pass through an additional step of processing, in which the intermediate product of a higher molecular weight is initially formed and then processed to a final form of nsP2/GFP
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