3.5.1.88: peptide deformylase

This is an abbreviated version!
For detailed information about peptide deformylase, go to the full flat file.

Reaction

Synonyms

AtDEF1.1, AtDEF1.2, AtDEF2, AtPDF1A, AtPDF1B, AtPDF1Bt, AtPDF2, BbPDF, BcPDF, BcPDF2, DEF, Def1, DEF2, deformylase, peptide N-formylmethionine, EC 3.5.1.27, EcPDF, ECPDF1B, EfPDF, HpPDF, HsPDF, hydrolase, aminoacyl-transfer ribonucleate, LiPDF, mPDF, Ni-peptide deformylase, PDF, PDF-1, PDF-2, PDF1A, PDF1B, PDF2, PdfA, PdfB, PdfC, peptide deformylase, peptide deformylase 1, peptide deformylase 1A, peptide deformylase 1B, peptide deformylase 2, Pf PDF, PfPDF, Polypeptide deformylase, SaPDF, sPDF, TbPDF1, TbPDF2, type I PDF, type II PDF, type II peptide deformylase, Vp 16 PDF1B, Vp16 PDF, Vp16T, XOO1075, XoPDF

ECTree

     3 Hydrolases

         3.5 Acting on carbon-nitrogen bonds, other than peptide bonds

             3.5.1 In linear amides

                3.5.1.88 peptide deformylase

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Results	in table
4	Activating Compound
61475	AA Sequence
102	Application
4	CAS Registry Number
79	Cloned(Commentary)
59	Crystallization (Commentary)
157	Disease/ Diagnostics
4	Expression
124	General Information
18	General Stability
565	IC50 Value
1419	Inhibitors
17	kcat/KM [mM/s]
169	Ki Value [mM]
154	KM Value [mM]
25	Localization
199	Metals/Ions
27	Molecular Weight [Da]
95	Natural Substrates/ Products (Substrates)
1	Organic Solvent Stability
471	Organism
16	Oxidation Stability
250	PDB ID
26	pH Optimum
8	pH Range
2	pH Stability
1	pI Value
89	Protein Variants
75	Purification (Commentary)
1	Reaction
38	Reaction Type
252	Reference
3	Renatured (Commentary)
53	Source Tissue
8	Specific Activity [micromol/min/mg]
7	Storage Stability
354	Substrates and Products (Substrate)
44	Subunits
285	Synonyms
1	Systematic Name
21	Temperature Optimum [°C]
3	Temperature Range [°C]
13	Temperature Stability [°C]
130	Turnover Number [1/s]

Activating Compound

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Activating Compound on EC 3.5.1.88 - peptide deformylase

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ACTIVATING COMPOUND

ORGANISM

UNIPROT

COMMENTARY

LITERATURE

IMAGE

1,10-phenanthroline

Trypanosoma cruzi

-

1-5 mM strongly activates deformylase activity, activity increases 6fold at 1 mM

720408

EDTA

Trypanosoma cruzi

-

1-20 mM strongly activates deformylase activity, activity increases up to 70% at 10 mM

720408

KCl

Escherichia coli

-

2fold increase within 0-0.5 M, beyond 0.5 M smaller extend of increase

393806

N-formyl-Met-Ala-Ser

Trypanosoma cruzi

-

the activity increases with substrate concentration up to 35 mM

720408