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Information on Organism Pyrobaculum neutrophilum

Synonyms:
DSM 2338; JCM 9278; NBRC 100436; Pyrobaculum neutrophilum; Pyrobaculum neutrophilum (Stetter and Zillig 1989) Chan et al. 2013; strain V24Sta; Thermoproteus neutrophilus Stetter and Zillig 1989; Thermoproteus neutrophilus; Thermoproteus neutrophilus Zillig 1989;
Word Map for Organism Pyrobaculum neutrophilum
TaxTree of Organism Pyrobaculum neutrophilum
Condensed Tree View
cellular organisms
Archaea can be found in Brenda BRENDA pathways(superkingdom)
TACK group can be found in Brenda BRENDA pathways(clade)
Crenarchaeota can be found in Brenda BRENDA pathways(phylum)
Thermoprotei can be found in Brenda BRENDA pathways(class)
Thermoproteales can be found in Brenda BRENDA pathways(order)
Thermoproteaceae can be found in Brenda (family)
Pyrobaculum can be found in Brenda BRENDA pathways(genus)
Pyrobaculum neutrophilum can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)
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PWY-7726
(8E,10E)-dodeca-8,10-dienol biosynthesis
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PWY-7654
(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)
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PWY-7216
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
1,3-propanediol biosynthesis (engineered)
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PWY-7385
10-cis-heptadecenoyl-CoA degradation (yeast)
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PWY-7337
10-trans-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
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PWY-7339
10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
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PWY-7338
2-deoxy-D-ribose degradation II
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PWY-8058
2-methyl-branched fatty acid beta-oxidation
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PWY-8181
2-methylpropene degradation
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PWY-7778
3-hydroxypropanoate cycle
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PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
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PWY-5789
3-phenylpropanoate degradation
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P281-PWY
4-aminobutanoate degradation V
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PWY-5022
4-ethylphenol degradation (anaerobic)
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PWY-6080
4-hydroxybenzoate biosynthesis III (plants)
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PWY-6435
4-oxopentanoate degradation
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PWY-7948
9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
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PWY-7340
acetate fermentation
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acetoacetate degradation (to acetyl CoA)
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ACETOACETATE-DEG-PWY
acetyl-CoA fermentation to butanoate
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PWY-5676
adipate biosynthesis
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PWY-8347
adipate degradation
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PWY-8354
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
Aflatoxin biosynthesis
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alpha-Linolenic acid metabolism
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anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
androstenedione degradation I (aerobic)
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PWY-6944
androstenedione degradation II (anaerobic)
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PWY-8152
benzoate biosynthesis I (CoA-dependent, beta-oxidative)
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PWY-6443
Benzoate degradation
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benzoyl-CoA biosynthesis
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PWY-6458
beta-Alanine metabolism
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Biosynthesis of secondary metabolites
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Biosynthesis of unsaturated fatty acids
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butanoate fermentation
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Butanoate metabolism
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C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
C5-Branched dibasic acid metabolism
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Calvin-Benson-Bassham cycle
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CALVIN-PWY
Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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cholesterol degradation to androstenedione I (cholesterol oxidase)
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PWY-6945
cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
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PWY-6946
Citrate cycle (TCA cycle)
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citric acid cycle
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CO2 fixation in Crenarchaeota
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CO2 fixation into oxaloacetate (anaplerotic)
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PWYQT-4429
crotonate fermentation (to acetate and cyclohexane carboxylate)
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PWY-7401
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
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PWY-7854
docosahexaenoate biosynthesis III (6-desaturase, mammals)
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PWY-7606
Entner-Doudoroff pathway II (non-phosphorylative)
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NPGLUCAT-PWY
ethene biosynthesis V (engineered)
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PWY-7124
Ethylbenzene degradation
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ethylbenzene degradation (anaerobic)
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PWY-481
ethylmalonyl-CoA pathway
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PWY-5741
fatty acid beta-oxidation I (generic)
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FAO-PWY
fatty acid beta-oxidation II (plant peroxisome)
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PWY-5136
fatty acid beta-oxidation VI (mammalian peroxisome)
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PWY66-391
fatty acid beta-oxidation VII (yeast peroxisome)
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PWY-7288
Fatty acid biosynthesis
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fatty acid biosynthesis initiation (type I)
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PWY-5966-1
Fatty acid degradation
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Fatty acid elongation
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fatty acid salvage
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PWY-7094
formaldehyde assimilation I (serine pathway)
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PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
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PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
Fructose and mannose metabolism
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Geraniol degradation
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gluconeogenesis
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gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glutamate and glutamine metabolism
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glutaryl-CoA degradation
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PWY-5177
glycerol-3-phosphate to fumarate electron transfer
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PWY0-1582
glycolysis
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Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
Glyoxylate and dicarboxylate metabolism
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hydrogen production
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hydrogen production III
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PWY-6759
hydrogen production VI
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PWY-6780
hydrogen production VIII
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PWY-6785
hydrogen to fumarate electron transfer
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PWY0-1576
incomplete reductive TCA cycle
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P42-PWY
isoprene biosynthesis II (engineered)
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PWY-7391
isopropanol biosynthesis (engineered)
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PWY-6876
jadomycin biosynthesis
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PWY-6679
jasmonic acid biosynthesis
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PWY-735
ketogenesis
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PWY66-367
ketolysis
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PWY66-368
L-alanine degradation V (oxidative Stickland reaction)
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PWY-8189
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-glutamate degradation VII (to butanoate)
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GLUDEG-II-PWY
L-isoleucine degradation I
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ILEUDEG-PWY
L-lysine fermentation to acetate and butanoate
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P163-PWY
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales)
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PWY-8377
lipid metabolism
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Lysine degradation
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Metabolic pathways
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Methane metabolism
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Methanobacterium thermoautotrophicum biosynthetic metabolism
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PWY-6146
methyl tert-butyl ether degradation
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PWY-7779
methylaspartate cycle
mevalonate metabolism
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mevalonate pathway I (eukaryotes and bacteria)
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PWY-922
mevalonate pathway II (haloarchaea)
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PWY-6174
mevalonate pathway III (Thermoplasma)
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PWY-7524
mevalonate pathway IV (archaea)
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PWY-8125
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
mycolate biosynthesis
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PWYG-321
N-Glycan biosynthesis
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NADH to fumarate electron transfer
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PWY0-1336
nitrogen remobilization from senescing leaves
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PWY-6549
Nitrotoluene degradation
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non-pathway related
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nucleoside and nucleotide degradation (archaea)
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PWY-5532
oleate beta-oxidation
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PWY0-1337
Oxidative phosphorylation
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Pantothenate and CoA biosynthesis
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pantothenate biosynthesis
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partial TCA cycle (obligate autotrophs)
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PWY-5913
Pentose phosphate pathway
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pentose phosphate pathway
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pentose phosphate pathway (non-oxidative branch) II
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PWY-8178
phosphopantothenate biosynthesis I
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PANTO-PWY
photosynthesis
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platensimycin biosynthesis
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PWY-8179
polyhydroxybutanoate biosynthesis
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PWY1-3
Porphyrin and chlorophyll metabolism
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propanoate fermentation to 2-methylbutanoate
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PWY-5109
Propanoate metabolism
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propanoyl CoA degradation I
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PROPIONMET-PWY
propionate fermentation
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protein N-glycosylation initial phase (eukaryotic)
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MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
purine metabolism
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purine nucleobases degradation II (anaerobic)
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PWY-5497
pyruvate decarboxylation to acetyl CoA III
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PWY-8275
pyruvate fermentation to acetate I
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P142-PWY
pyruvate fermentation to acetate III
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PWY-5483
pyruvate fermentation to acetate V
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PWY-5537
pyruvate fermentation to acetate VI
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PWY-5538
pyruvate fermentation to acetate VII
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PWY-5600
pyruvate fermentation to acetone
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PWY-6588
pyruvate fermentation to butanoate
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CENTFERM-PWY
pyruvate fermentation to butanol I
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PWY-6583
pyruvate fermentation to butanol II (engineered)
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PWY-6883
pyruvate fermentation to ethanol III
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PWY-6587
pyruvate fermentation to hexanol (engineered)
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PWY-6863
pyruvate fermentation to propanoate I
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P108-PWY
Pyruvate metabolism
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reductive glycine pathway of autotrophic CO2 fixation
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PWY-8303
reductive monocarboxylic acid cycle
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PWY-5493
reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
Rubisco shunt
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PWY-5723
sedoheptulose bisphosphate bypass
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PWY0-1517
sitosterol degradation to androstenedione
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PWY-6948
succinate fermentation to butanoate
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PWY-5677
succinate to chytochrome c oxidase via cytochrome c6
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PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
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PWY0-1353
succinate to cytochrome bo oxidase electron transfer
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PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
succinate to plastoquinol oxidase
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PWY1YI0-8
sucrose biosynthesis I (from photosynthesis)
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SUCSYN-PWY
sucrose degradation V (sucrose alpha-glucosidase)
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PWY66-373
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
TCA cycle VIII (Chlamydia)
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TCA-1
Terpenoid backbone biosynthesis
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Tryptophan metabolism
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tryptophan metabolism
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Ubiquinone and other terpenoid-quinone biosynthesis
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Valine, leucine and isoleucine degradation
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valproate beta-oxidation
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PWY-8182
Various types of N-glycan biosynthesis
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vitamin K-epoxide cycle
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
B1Y931 and B1Y932, B1Y9F9 and B1Y9G0, B1YBY4, B1YBY5, B1YBY6, B1YBY7 and B1YBY8
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Manually annotated by BRENDA team
B1Y931 and B1Y932, B1Y9F9 and B1Y9G0, B1YBY4, B1YBY5, B1YBY6, B1YBY7 and B1YBY8
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Manually annotated by BRENDA team
B1Y931 and B1Y932, B1Y9F9 and B1Y9G0, B1YBY4, B1YBY5, B1YBY6, B1YBY7 and B1YBY8
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Manually annotated by BRENDA team
B1Y931 and B1Y932, B1Y9F9 and B1Y9G0, B1YBY4, B1YBY5, B1YBY6, B1YBY7 and B1YBY8
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Manually annotated by BRENDA team
B1Y931 and B1Y932, B1Y9F9 and B1Y9G0, B1YBY4, B1YBY5, B1YBY6, B1YBY7 and B1YBY8
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Manually annotated by BRENDA team
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LINKS TO OTHER DATABASES (specific for Pyrobaculum neutrophilum)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA