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Information on Organism Hyphomicrobium denitrificans

Synonyms:
ATCC 51888; DSM 1869; Hyphomicrobium denitrificans; Hyphomicrobium denitrificans Urakami et al. 1995; NCIB 11706; NCIB:11706; NCIMB 11706; strain TK 0415; strain X;
TaxTree of Organism Hyphomicrobium denitrificans
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Alphaproteobacteria can be found in Brenda BRENDA pathways(class)
Hyphomicrobiales can be found in Brenda BRENDA pathways(order)
Hyphomicrobiaceae can be found in Brenda BRENDA pathways(family)
Hyphomicrobium can be found in Brenda BRENDA pathways(genus)
Hyphomicrobium denitrificans can be found in Brenda BRENDA pathways(species)
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EC NUMBER
COMMENTARY hide
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
1,2-dichloroethane degradation
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12DICHLORETHDEG-PWY
1,5-anhydrofructose degradation
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PWY-6992
1-butanol autotrophic biosynthesis (engineered)
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PWY-6886
acetate fermentation
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acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
alanine metabolism
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alkylnitronates degradation
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PWY-723
Amaryllidacea alkaloids biosynthesis
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PWY-7826
Aminobenzoate degradation
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aminopropylcadaverine biosynthesis
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PWY0-1303
ammonia oxidation II (anaerobic)
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P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
Arachidonic acid metabolism
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arachidonic acid metabolism
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Arginine and proline metabolism
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arginine dependent acid resistance
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PWY0-1299
aromatic biogenic amine degradation (bacteria)
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PWY-7431
ATP biosynthesis
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PWY-7980
Bifidobacterium shunt
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P124-PWY
Biosynthesis of secondary metabolites
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Biosynthesis of unsaturated fatty acids
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bisucaberin biosynthesis
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PWY-6381
bupropion degradation
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PWY66-241
C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
cadaverine biosynthesis
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PWY0-1601
Caffeine metabolism
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Calvin-Benson-Bassham cycle
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CALVIN-PWY
Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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Chloroalkane and chloroalkene degradation
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Citrate cycle (TCA cycle)
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citric acid cycle
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coenzyme B/coenzyme M regeneration I (methanophenazine-dependent)
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PWY-5207
coenzyme M biosynthesis
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creatine phosphate biosynthesis
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PWY-6158
Cysteine and methionine metabolism
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denitrification
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desferrioxamine B biosynthesis
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PWY-6376
desferrioxamine E biosynthesis
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PWY-6375
dopamine degradation
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PWY6666-2
Drug metabolism - cytochrome P450
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dZTP biosynthesis
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PWY-8289
Entner Doudoroff pathway
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Entner-Doudoroff pathway I
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PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
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NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
Fatty acid degradation
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Fe(II) oxidation
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PWY-6692
formaldehyde assimilation I (serine pathway)
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PWY-1622
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis III
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PWY66-399
Glutathione metabolism
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glutathione metabolism
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glutathione-peroxide redox reactions
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PWY-4081
glycerol degradation to butanol
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PWY-7003
Glycine, serine and threonine metabolism
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glycolysis
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Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
Glyoxylate and dicarboxylate metabolism
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glyoxylate cycle
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GLYOXYLATE-BYPASS
heterolactic fermentation
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P122-PWY
Histidine metabolism
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incomplete reductive TCA cycle
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P42-PWY
Inositol phosphate metabolism
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Isoquinoline alkaloid biosynthesis
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L-arginine degradation III (arginine decarboxylase/agmatinase pathway)
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PWY0-823
L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)
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ARGDEG-III-PWY
L-lysine degradation I
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PWY0-461
L-lysine degradation X
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PWY-6328
L-phenylalanine degradation IV (mammalian, via side chain)
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PWY-6318
L-tryptophan degradation VI (via tryptamine)
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PWY-3181
L-tryptophan degradation X (mammalian, via tryptamine)
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PWY-6307
Linoleic acid metabolism
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lipid metabolism
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lupanine biosynthesis
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PWY-5468
Lysine degradation
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lysine metabolism
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malate/L-aspartate shuttle pathway
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MALATE-ASPARTATE-SHUTTLE-PWY
melatonin degradation I
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PWY-6398
melatonin degradation II
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PWY-6399
Metabolic pathways
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Metabolism of xenobiotics by cytochrome P450
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Methane metabolism
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methane metabolism
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methanol oxidation to carbon dioxide
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PWY-7616
methanol oxidation to formaldehyde I
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PWY-6966
methanol oxidation to formaldehyde II
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PWY-6510
methanol oxidation to formaldehyde IV
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PWY-5506
methylaspartate cycle
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
NAD(P)/NADPH interconversion
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PWY-5083
NADH to cytochrome bd oxidase electron transfer I
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PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
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PWY0-1335
NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
Nicotinate and nicotinamide metabolism
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nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction III (dissimilatory)
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PWY0-1321
nitrate reduction IV (dissimilatory)
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PWY-5674
nitrate reduction IX (dissimilatory)
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PWY0-1581
nitrate reduction V (assimilatory)
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PWY-5675
nitrate reduction VII (denitrification)
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PWY-6748
nitrate reduction VIII (dissimilatory)
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PWY0-1352
nitrate reduction VIIIb (dissimilatory)
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PWY0-1573
nitrate reduction X (dissimilatory, periplasmic)
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PWY0-1584
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
Nitrogen metabolism
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non-pathway related
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noradrenaline and adrenaline degradation
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PWY-6342
oleandomycin activation/inactivation
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PWY-6972
oleate biosynthesis II (animals and fungi)
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PWY-5996
oxidative decarboxylation of pyruvate
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Oxidative phosphorylation
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oxidative phosphorylation
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palmitoleate biosynthesis IV (fungi and animals)
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PWY3O-1801
Pantothenate and CoA biosynthesis
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phenol degradation
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Phenylalanine metabolism
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phenylethanol biosynthesis
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PWY-5751
phenylethylamine degradation I
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2PHENDEG-PWY
Photosynthesis
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photosynthesis
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photosynthesis light reactions
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PWY-101
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
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PWY-7218
phytate degradation I
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PWY-4702
polyamine pathway
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Porphyrin and chlorophyll metabolism
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Purine metabolism
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purine metabolism
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putrescine biosynthesis I
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PWY-40
putrescine biosynthesis II
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PWY-43
putrescine biosynthesis III
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PWY-46
putrescine degradation III
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PWY-0
pyrimidine deoxyribonucleotides de novo biosynthesis I
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PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis II
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PWY-7187
pyrimidine deoxyribonucleotides de novo biosynthesis III
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PWY-6545
pyrimidine deoxyribonucleotides dephosphorylation
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PWY-7206
Pyrimidine metabolism
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pyruvate decarboxylation to acetyl CoA II
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PWY-6970
pyruvate fermentation to propanoate I
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P108-PWY
Pyruvate metabolism
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reactive oxygen species degradation
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DETOX1-PWY-1
reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
Retinol metabolism
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Riboflavin metabolism
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Rubisco shunt
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PWY-5723
salidroside biosynthesis
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PWY-6802
serotonin degradation
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PWY-6313
serotonin metabolism
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sorgoleone biosynthesis
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PWY-5987
spermidine biosynthesis III
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PWY-6834
Starch and sucrose metabolism
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Steroid hormone biosynthesis
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sucrose biosynthesis I (from photosynthesis)
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SUCSYN-PWY
superoxide radicals degradation
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DETOX1-PWY
superpathway of glucose and xylose degradation
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PWY-6901
superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
superpathway of ornithine degradation
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ORNDEG-PWY
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
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PWY0-166
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VIII (Chlamydia)
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TCA-1
Tropane, piperidine and pyridine alkaloid biosynthesis
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Tryptophan metabolism
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tryptophan metabolism
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tunicamycin biosynthesis
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PWY-7821
Tyrosine metabolism
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tyrosine metabolism
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vanillin biosynthesis I
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PWY-5665
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LINKS TO OTHER DATABASES (specific for Hyphomicrobium denitrificans)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA