5.3.1.6: ribose-5-phosphate isomerase
This is an abbreviated version!
For detailed information about ribose-5-phosphate isomerase, go to the full flat file.
Word Map on EC 5.3.1.6
-
5.3.1.6
-
indentation
-
ribulose-5-phosphate
-
clasp
-
transaldolase
-
calvin
-
phosphoribulokinase
-
denture
-
peri-implantitis
-
abut
-
d-allose
-
periapical
-
endodontic
-
d-psicose
-
3-epimerase
-
rri
-
synthesis
-
medicine
- 5.3.1.6
-
indentation
- ribulose-5-phosphate
- clasp
- transaldolase
-
calvin
- phosphoribulokinase
-
denture
- peri-implantitis
-
abut
- d-allose
-
periapical
-
endodontic
- d-psicose
-
3-epimerase
- rri
- synthesis
- medicine
Reaction
Synonyms
5-phosphate ketol-isomerase, 5-Phosphoribose isomerase, CTRPI, CTRpiB, D-Ribose 5-phosphate isomerase, D-ribose-5-phosphate isomerase, D-ribose-5-phosphate isomerase A, D-ribose-5-phosphate isomerase B, D-ribose-5-phosphate ketol-isomerase, D-xylose ketol-isomerase, EcRpiB, Isomerase, ribose phosphate, LINJ_28_2100, LMJF_28_1970, MJ1603, MtRpiB, Phosphopentoisomerase, Phosphopentose isomerase, Phosphoriboisomerase, ribose 5-phosphate isomerase A, Ribose phosphate isomerase, Ribose-5-P isomerase, ribose-5-phosphate isomerase, ribose-5-phosphate isomerase B, ribose-5-phosphate isomerase type B, Ribosephosphate isomerase A, Ribosephosphate isomerase B, RPI, RPI2 protein, RpiA, RpiB, SMU1234, SMU2142, Tc00.1047053509199.24, TM1080, type B ribose 5-phosphate isomerase, type B ribose-5-phosphate isomerase, type B Rpi
ECTree
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Reference on EC 5.3.1.6 - ribose-5-phosphate isomerase
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REF. 
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Noltmann, E.A.
Aldose-ketose isomerases
The Enzymes, 3rd Ed. (Boyer, P. D. , ed. )
6
271-354
1972
Echinococcus granulosus, Homo sapiens, Klebsiella aerogenes, Pediococcus pentosaceus, Rhodospirillum rubrum, Saccharomyces cerevisiae, Spinacia oleracea
-
Kiely, M.E.; Stuart, A.L.; Wood, T.
Partial purification and kinetic properties of ribose-5-phosphate ketol-isomerase and ribulose-5-phosphate 3-epimerase from various sources
Biochim. Biophys. Acta
293
534-541
1973
Bos taurus
Domagk, G.F.; Doering, K.M.; Chilla, R.
Purification and properties of ribose-phosphate isomerase from Candida utilis
Eur. J. Biochem.
38
259-264
1973
Cyberlindnera jadinii
Wood, T.
The detection and occurence of multiple forms of D-ribose 5-phosphate ketol isomerase
Arch. Biochem. Biophys.
160
40-46
1974
Rattus norvegicus, Spinacia oleracea
Domagk, G.F.; Alexander, W.R.; Doering, K.M.
Purification and properties of ribosephosphate isomerase from skeletal muscle
Hoppe-Seyler's Z. Physiol. Chem.
355
781-786
1984
Bos taurus
-
Essenberg, M.K.; Cooper, R.A.
Two ribose-5-phosphate isomerases from Escherichia coli K12: partial characterization of the enzymes and consideration of their possible physiological roles
Eur. J. Biochem.
55
323-332
1975
Escherichia coli
Domagk, G.F.; Alexander, W.R.
D-Ribose-5-phosphate isomerase from skeletal muscle
Methods Enzymol.
41A
424-426
1975
Bos taurus
Domagk, G.F.; Doering, K.M.
D-Ribose-5-phosphate isomerase from Candida utilis
Methods Enzymol.
41B
427-429
1975
Cyberlindnera jadinii
Horitsu, H.; Sasaki, I.; Kikuchi, T.; Suzuki, H.; Sumida, M.; Tomoyeda, M.
Purification, properties and structure of ribose 5-phosphate ketol isomerase from Candida utilis
Agric. Biol. Chem.
40
257-264
1976
Cyberlindnera jadinii
-
Middaugh, C.R.; MacElroy, R.D.
The effect of temperature on ribose-5-phosphate isomerase from mesophile Thiobacillus thioparus, and a thermophile, Bacillus caldolyticus
J. Biochem.
79
1331-1344
1976
[Bacillus] caldolyticus, Thiobacillus thioparus
Horitsu, H.; Sumida, M.; Banno, Y.; Tomoyeda, M.
Three forms of Candida utilis ribose 5-phosphate ketol isomerase
Agric. Biol. Chem.
42
2195-2201
1978
Cyberlindnera jadinii
-
Horitsu, H.; Banno, Y.; Kimura, S.; Shimizu, H.; Tomoyeda, M.
Chromatographic purification of ribose 5-phosphate ketol isomerase from Candida utilis on p-mercuribenzoate-6-aminohexyl-Sepharose 4B adsorbent
Agric. Biol. Chem.
43
663-664
1979
Cyberlindnera jadinii
-
Woodruff, W.W.; Wolfenden, R.
Inhibition of ribose-5-phosphate isomerase by 4-phosphoerythronate
J. Biol. Chem.
254
5866-5867
1979
Spinacia oleracea
MacElroy, R.D.; Middaugh, C.R.
Bacterial ribosephosphate isomerase
Methods Enzymol.
89
571-579
1982
[Bacillus] caldolyticus, Chromatium sp., Escherichia coli, Rhodospirillum rubrum, Halothiobacillus neapolitanus, Thiobacillus thioparus, Chromatium sp. D
Sainis, J.K.; Harris, G.C.
The association of ribulose-1,5-bisphosphate carboxylase with phosphoriboisomerase and phosphoribulokinase
Biochem. Biophys. Res. Commun.
139
947-954
1986
Pisum sativum
Skrukrud, C.L.; Anderson, L.E.
Chloroplast phosphoribulokinase associates with yeast phosphoriboisomerase in the presence of substrate
FEBS Lett.
280
259-261
1991
Cyberlindnera jadinii
Anderson, L.E.
Ribose-5-phosphate isomerase and ribulose-5-phosphate kinase show apparent specificity for a specific ribulose 5-phosphate species
FEBS Lett.
212
45-48
1987
Cyberlindnera jadinii
Cronin, C.N.; Nolan, D.P.; Voorheis, H.P.
The enzymes of the classical pentose phosphate pathway display differential activities in procyclic and bloodstream forms of Trypanosoma brucei
FEBS Lett.
244
26-30
1989
Trypanosoma brucei
Skrukrud, C.L.; Gordon, I.M.; Dorwin, S.; Yuan, X.H.; Johansson, G.; Anderson, L.E.
Purification and characterization of pea chloroplastic phosphoriboseisomerase
Plant Physiol.
97
730-735
1991
Pisum sativum
Malaisse, W.J.; Zähner, D.; Malaisse-Lagae, F.; Verbruggen, I.; Kayser, F.; Biesemans, M.; Willem, R.
Diastereotopic specificity of phosphoriboisomerase
Med. Sci. Res.
22
247-249
1994
Saccharomyces cerevisiae
-
Martin, W.; Henze, K.; Kellermann, J.; Flechner, A.; Scharrenberger, C.
Microsequencing and cDNA cloning of the Calvin cycle/OPPP enzyme ribose-5-phosphate isomerase (EC 5.3.1.6) from spinach chloroplasts
Plant Mol. Biol.
30
795-805
1996
Spinacia oleracea
Sudhakar, C.; Ramanjulu, S.; Srenivasuklu Reddy, P.; Veeranjaneyulu, K.
Response of some Calvin cycle enzymes subjected to salinity shock in vitro
Indian J. Exp. Biol.
35
665-667
1997
Macrotyloma uniflorum
Horitsu, K.
Die Isolierung und der Bestandteil des seltenen sauren Proteins im säugetierischen Organ. Teil 3. Die Verfeinerung und die einigen chemischen Eigenschaften der Ribose-5-phosphate-isomerase aus der Schweinemilz
Bull. Tokyo Kasei University
28
51-56
1988
Sus scrofa
-
Jung, C.H.; Hartman, F.C.; Lu, T.Y.S.; Larimer, F.W.
D-Ribose-5-phosphate isomerase from spinach: heterologous overexpression, purification, characterization, and site-directed mutagenesis of the recombinant enzyme
Arch. Biochem. Biophys.
373
409-417
2000
Spinacia oleracea
Hamada, K.; Ago, H.; Sugahara, M.; Nodake, Y.; Kuramitsu, S.; Miyano, M.
Oxyanion hole-stabilized stereospecific isomerization in ribose-5-phosphate isomerase (Rpi)
J. Biol. Chem.
278
49183-49190
2003
Thermus thermophilus, Thermus thermophilus HB8 / ATCC 27634 / DSM 579
Roos, A.K.; Andersson, C.E.; Bergfors, T.; Jacobsson, M.; Karlen, A.; Unge, T.; Jones, T.A.; Mowbray, S.L.
Mycobacterium tuberculosis ribose-5-phosphate isomerase has a known fold, but a novel active site
J. Mol. Biol.
335
799-809
2004
Mycobacterium tuberculosis
Rangarajan, E.S.; Sivaraman, J.; Matte, A.; Cygler, M.
Crystal structure of D-ribose-5-phosphate isomerase (RpiA) from Escherichia coli
Proteins
48
737-740
2002
Escherichia coli
Ishikawa, K.; Matsui, I.; Payan, F.; Cambillau, C.; Ishida, H.; Kawarabayasi, Y.; Kikuchi, H.; Roussel, A.
A hyperthermostable D-ribose-5-phosphate isomerase from Pyrococcus horikoshii characterization and three-dimensional structure
Structure
10
877-886
2002
Pyrococcus horikoshii (O50083), Pyrococcus horikoshii
Zhang, R.; Andersson, C.E.; Savchenko, A.; Skarina, T.; Evdokimova, E.; Beasley, S.; Arrowsmith, C.H.; Edwards, A.M.; Joachimiak, A.; Mowbray, S.L.
Structure of Escherichia coli ribose-5-phosphate isomerase: a ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle
Structure
11
31-42
2003
Escherichia coli (P0A7Z0), Escherichia coli
Kondo, H.; Nakamura, Y.; Dong, Y.X.; Nikawa, J.; Sueda, S.
Pyridoxine biosynthesis in yeast: participation of ribose 5-phosphate ketol-isomerase
Biochem. J.
379
65-70
2004
Saccharomyces cerevisiae
Dani, D.N.; Sainis, J.K.
Isolation and characterization of a thylakoid membrane module showing partial light and dark reactions
Biochim. Biophys. Acta
1669
43-52
2005
Synechococcus elongatus PCC 7942 = FACHB-805
Graille, M.; Meyer, P.; Leulliot, N.; Sorel, I.; Janin, J.; Van Tilbeurgh, H.; Quevillon-Cheruel, S.
Crystal structure of the S. cerevisiae D-ribose-5-phosphate isomerase: comparison with the archaeal and bacterial enzymes
Biochimie
87
763-769
2005
Saccharomyces cerevisiae
Roos, A.K.; Burgos, E.; Ericsson, D.J.; Salmon, L.; Mowbray, S.L.
Competitive inhibitors of Mycobacterium tuberculosis ribose-5-phosphate isomerase B reveal new information about the reaction mechanism
J. Biol. Chem.
280
6416-6422
2005
Mycobacterium tuberculosis (P9WKD7), Mycobacterium tuberculosis, Mycobacterium tuberculosis H37Rv (P9WKD7)
Burgos, E.; Salmon, L.
Synthesis and kinetic evaluation of 4-deoxy-4-phosphonomethyl-D-erythronate, the first hydrolytically stable and potent competitive inhibitor of ribose-5-phosphate isomerase
Tetrahedron Lett.
45
3465-3469
2004
Spinacia oleracea
-
Burgos, E.; Salmon, L.
Synthesis and evaluation of new 4-phospho-D-erythronic acid derivatives as competitive inhibitors of spinach ribose-5-phosphate isomerase
Tetrahedron Lett.
45
753-756
2004
Spinacia oleracea
-
Burgos, E.; Roos, A.K.; Mowbray, S.L.; Salmon, L.
Synthesis of 5-deoxy-5-phospho-D-ribonohydroxamic acid: a new competitive and selective inhibitor of type B ribose-5-phosphate isomerase from Mycobacterium tuberculosis
Tetrahedron Lett.
46
3691-3694
2005
Mycobacterium tuberculosis, Spinacia oleracea
-
Anderson, L.E.; Chrostowski, J.; Carol, A.A.
Enzyme co-localization with transketolase, xylulose-5-P 3-epimerase and phosphoriboisomerase in pea leaf chloroplasts
Plant Sci.
171
686-698
2006
Pisum sativum
Holmes, M.A.; Buckner, F.S.; Van Voorhis, W.C.; Verlinde, C.L.; Mehlin, C.; Boni, E.; DeTitta, G.; Luft, J.; Lauricella, A.; Anderson, L.; Kalyuzhniy, O.; Zucker, F.; Schoenfeld, L.W.; Earnest, T.N.; Hol, W.G.; Merritt, E.A.
Structure of ribose 5-phosphate isomerase from Plasmodium falciparum
Acta Crystallogr. Sect. F
F62
427-431
2006
Plasmodium falciparum
Stern, A.L.; Burgos, E.; Salmon, L.; Cazzulo, J.J.
Ribose 5-phosphate isomerase type B from Trypanosoma cruzi: kinetic properties and site-directed mutagenesis reveal information about the reaction mechanism
Biochem. J.
401
279-285
2007
Trypanosoma cruzi (Q4CQE2), Trypanosoma cruzi, Trypanosoma cruzi CL Brener (Q4CQE2)
Park, C.S.; Yeom, S.J.; Kim, H.J.; Lee, S.H.; Lee, J.K.; Kim, S.W.; Oh, D.K.
Characterization of ribose-5-phosphate isomerase of Clostridium thermocellum producing D-allose from D-psicose
Biotechnol. Lett.
29
1387-1391
2007
Acetivibrio thermocellus
Yoon, R.Y.; Yeom, S.J.; Kim, H.J.; Oh, D.K.
Novel substrates of a ribose-5-phosphate isomerase from Clostridium thermocellum
J. Biotechnol.
139
26-32
2009
Acetivibrio thermocellus
Roos, A.K.; Mariano, S.; Kowalinski, E.; Salmon, L.; Mowbray, S.L.
D-ribose-5-phosphate isomerase B from Escherichia coli is also a functional D-allose-6-phosphate isomerase, while the Mycobacterium tuberculosis enzyme is not
J. Mol. Biol.
382
667-679
2008
Escherichia coli, Mycobacterium tuberculosis (P9WKD7), Mycobacterium tuberculosis, Mycobacterium tuberculosis H37Rv (P9WKD7)
Jung, J.; Yeom, S.J.; Kim, J.; Kim, J.K.; Natarajan, S.; Ahn, Y.J.; Lim, S.B.; Oh, D.K.; Kang, L.W.
Overexpression, crystallization and preliminary X-ray crystallographic analysis of D-ribose-5-phosphate isomerase from Clostridium thermocellum
Acta Crystallogr. Sect. F
65
1141-1144
2009
Acetivibrio thermocellus
Strange, R.W.; Antonyuk, S.V.; Ellis, M.J.; Bessho, Y.; Kuramitsu, S.; Yokoyama, S.; Hasnain, S.S.
The structure of an archaeal ribose-5-phosphate isomerase from Methanocaldococcus jannaschii (MJ1603)
Acta Crystallogr. Sect. F
65
1214-1217
2009
Methanocaldococcus jannaschii (Q58998), Methanocaldococcus jannaschii
Mariano, S.; Roos, A.K.; Mowbray, S.L.; Salmon, L.
Competitive inhibitors of type B ribose 5-phosphate isomerases: design, synthesis and kinetic evaluation of new D-allose and D-allulose 6-phosphate derivatives
Carbohydr. Res.
344
869-880
2009
Escherichia coli, Mycobacterium tuberculosis (P9WKD7), Mycobacterium tuberculosis, Mycobacterium tuberculosis H37Rv (P9WKD7)
Kim, T.G.; Kwon, T.H.; Min, K.; Dong, M.S.; Park, Y.I.; Ban, C.
Crystal structures of substrate and inhibitor complexes of ribose 5-phosphate isomerase A from Vibrio vulnificus YJ016
Mol. Cells
27
99-103
2009
Vibrio vulnificus (Q7MHL9), Vibrio vulnificus
Xiong, Y.; DeFraia, C.; Williams, D.; Zhang, X.; Mou, Z.
Deficiency in a cytosolic ribose-5-phosphate isomerase causes chloroplast dysfunction, late flowering and premature cell death in Arabidopsis
Physiol. Plant.
137
249-263
2009
Arabidopsis thaliana (Q9ZU38)
Yeom, S.J.; Seo, E.S.; Kim, Y.S.; Oh, D.K.
Increased D-allose production by the R132E mutant of ribose-5-phosphate isomerase from Clostridium thermocellum
Appl. Microbiol. Biotechnol.
89
1859-1866
2011
Acetivibrio thermocellus (A3DIL8), Acetivibrio thermocellus, Acetivibrio thermocellus ATCC 27405 (A3DIL8)
Jung, J.; Kim, J.K.; Yeom, S.J.; Ahn, Y.J.; Oh, D.K.; Kang, L.W.
Crystal structure of Clostridium thermocellum ribose-5-phosphate isomerase B reveals properties critical for fast enzyme kinetics
Appl. Microbiol. Biotechnol.
90
517-527
2011
Acetivibrio thermocellus (A3DIL8), Acetivibrio thermocellus, Acetivibrio thermocellus ATCC 27405 (A3DIL8)
Stern, A.L.; Naworyta, A.; Cazzulo, J.J.; Mowbray, S.L.
Structures of type B ribose 5-phosphate isomerase from Trypanosoma cruzi shed light on the determinants of sugar specificity in the structural family
FEBS J.
278
793-808
2011
Trypanosoma cruzi (Q4CQE2), Trypanosoma cruzi, Trypanosoma cruzi CL Brener (Q4CQE2)
Park, C.; Yeom, S.; Lim, Y.; Kim, Y.; Oh, D.
Substrate specificity of a recombinant ribose-5-phosphate isomerase from Streptococcus pneumoniae and its application in the production of l-lyxose and l-tagatose
World J. Microbiol. Biotechnol.
27
743-750
2011
Streptococcus pneumoniae
Wang, C.; Fan, X.; Cao, X.; Liu, X.; Li, L.; Su, X.
Preliminary crystallographic analysis of two hypothetical ribose-5-phosphate isomerases from Streptococcus mutans
Acta Crystallogr. Sect. F
68
565-568
2012
Streptococcus mutans (Q8DRS5), Streptococcus mutans (Q8DTT9), Streptococcus mutans
Yeom, S.; Kim, B.; Park, C.; Oh, D.
Substrate specificity of ribose-5-phosphate isomerases from Clostridium difficile and Thermotoga maritima
Biotechnol. Lett.
32
829-835
2010
Clostridioides difficile, Clostridioides difficile ATCC BAA-1382D-5
Feng, Z.; Mu, W.; Jiang, B.
Characterization of ribose-5-phosphate isomerase converting D-psicose to D-allose from Thermotoga lettingae TMO
Biotechnol. Lett.
35
719-724
2013
Pseudothermotoga lettingae, Pseudothermotoga lettingae TMO
Edwards, T.E.; Abramov, A.B.; Smith, E.R.; Baydo, R.O.; Leonard, J.T.; Leibly, D.J.; Thompkins, K.B.; Clifton, M.C.; Gardberg, A.S.; Staker, B.L.; Van Voorhis, W.C.; Myler, P.J.; Stewart, L.J.
Structural characterization of a ribose-5-phosphate isomerase B from the pathogenic fungus Coccidioides immitis
BMC Struct. Biol.
11
39
2011
Coccidioides immitis (P0CL19), Coccidioides immitis
Wang, J.; Yang, W.
Concerted proton transfer mechanism of Clostridium thermocellum ribose-5-phosphate isomerase
J. Phys. Chem. B
117
9354-9361
2013
Acetivibrio thermocellus (A3DIL8), Acetivibrio thermocellus
Sun, F.; Zhang, X.Z.; Myung, S.; Zhang, Y.H.
Thermophilic Thermotoga maritima ribose-5-phosphate isomerase RpiB: optimized heat treatment purification and basic characterization
Protein Expr. Purif.
82
302-307
2012
Thermotoga maritima
Yeom, S.; Kim, B.; Park, C.; Oh, D.
Substrate specificity of ribose-5-phosphate isomerases from Clostridium difficile and Thermotoga maritima
Biotechnol. Lett.
32
829-835
2010
Clostridioides difficile (AM180355), Thermotoga maritima (Q9X0G9), Clostridioides difficile ATCC BAA-1382D-5 (AM180355), Thermotoga maritima DSM 3109 (Q9X0G9)
Heintze, J.; Costa, J.R.; Weber, M.; Ketteler, R.
Ribose 5-phosphate isomerase inhibits LC3 processing and basal autophagy
Cell. Signal.
28
1380-1388
2016
Homo sapiens (P49247)
Lee, T.; Shin, K.; Oh, D.
Biotransformation of fructose to allose by a one-pot reaction using Flavonifractor plautii D-allulose 3-epimerase and Clostridium thermocellum ribose 5-phosphate isomerase
J. Microbiol. Biotechnol.
28
418-424
2018
Acetivibrio thermocellus, Acetivibrio thermocellus ATCC 27405
Capriles, P.V.; Baptista, L.P.; Guedes, I.A.; Guimaraes, A.C.; Custodio, F.L.; Alves-Ferreira, M.; Dardenne, L.E.
Structural modeling and docking studies of ribose 5-phosphate isomerase from Leishmania major and Homo sapiens a comparative analysis for Leishmaniasis treatment
J. Mol. Graph. Model.
55
134-147
2015
Homo sapiens (P49247), Leishmania major (Q4Q869)
de V. C. Sinatti, V.; R. Baptista, L.; Alves-Ferreira, M.; Dardenne, L.; HermÃxadnio Martins da Silva, J.; Guimarães, A.
In silico identification of inhibitors of ribose 5-phosphate isomerase from Trypanosoma cruzi using ligand and structure based approaches
J. Mol. Graph. Model.
77
168-180
2017
Trypanosoma cruzi (Q4CQE2), Trypanosoma cruzi, Trypanosoma cruzi CL Brener (Q4CQE2)
Chou, Y.; Jiang, J.; Yang, M.; Lu, J.; Lin, H.; Wang, H.; Yuh, C.
Identification of a noncanonical function for ribose-5-phosphate isomerase A promotes colorectal cancer formation by stabilizing and activating beta-catenin via a novel C-terminal domain
PLoS Biol.
16
e2003714
2018
Homo sapiens (P49247), Homo sapiens
Kaur, P.; Tripathi, N.; Desale, J.; Neelagiri, S.; Yadav, S.; Bharatam, P.; Singh, S.
Mutational and structural analysis of conserved residues in ribose-5-phosphate isomerase B from Leishmania donovani Role in substrate recognition and conformational stability
PLoS ONE
11
e0150764
2016
Leishmania donovani (G9JM00), Leishmania donovani
Xu, Q.; Schwarzenbacher, R.; McMullan, D.; Von Delft, F.; Brinen, L.; Canaves, J.; Dai, X.; Deacon, A.; Elsliger, M.; Eshagi, S.; Floyd, R.; Godzik, A.; Grittini, C.; Grzechnik, S.; Jaroszewski, L.; Karlak, C.; Klock, H.; Koesema, E.; Kovarik, J.; Kreusch, A.; Kuhn, P.; Lesley, S.A.; Levin, I.; McPhillips, T.M.; Miller, M.D.; Morse, A.; Moy, K.; Ouyang, J.; Page, R.; Quijano, K.; Robb, A.; Spraggon, G.; Stevens, R.C.; van den Bedem, H.; Velasquez, J.; Vincent, J.; Wang, X.; West, B.; Wolf, G.; Hodgson, K.O.; Wooley, J.; Wilson, I.A.
Crystal structure of a ribose-5-phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 A resolution
Proteins
56
171-175
2004
Thermotoga maritima (Q9X0G9), Thermotoga maritima, Thermotoga maritima DSM 3109 (Q9X0G9)
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