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Information on Organism Vogesella indigofera

Synonyms:
ATCC 19706; Bacillus indigoferus; "Bacillus indigoferus" Voges 1893; CCUG 2873; CCUG 32860; Chromobacterium indigoferum; CIP 103306; DSM 3303; LMG 6867; LMG:6867; Pseudomonas indigofera; Pseudomonas indigofera (Voges 1893) Migula 1900 (Approved Lists 1980); Vogesella indigofera; Vogesella indigofera (Voges 1893) Grimes et al. 1997;
TaxTree of Organism Vogesella indigofera
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Betaproteobacteria can be found in Brenda BRENDA pathways(class)
Neisseriales can be found in Brenda (order)
Chromobacteriaceae can be found in Brenda (family)
Vogesella can be found in Brenda BRENDA pathways(genus)
Vogesella indigofera can be found in Brenda BRENDA pathways(species)
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EC NUMBER
COMMENTARY hide
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-lactate fermentation to propanoate, acetate and hydrogen
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-
PWY-8086
1,3-propanediol biosynthesis (engineered)
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-
PWY-7385
2-methylcitrate cycle I
-
-
PWY0-42
2-methylcitrate cycle II
-
-
PWY-5747
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
-
PWY-7279
aerobic respiration III (alternative oxidase pathway)
-
-
PWY-4302
alanine metabolism
-
-
Amino sugar and nucleotide sugar metabolism
-
-
anaerobic energy metabolism (invertebrates, cytosol)
-
-
PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
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-
PWY-7384
Arginine and proline metabolism
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-
Arginine biosynthesis
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-
arginine metabolism
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-
Atrazine degradation
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-
Biosynthesis of secondary metabolites
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-
Butanoate metabolism
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-
C4 and CAM-carbon fixation
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-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
Carbon fixation in photosynthetic organisms
-
-
Carbon fixation pathways in prokaryotes
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-
chitin deacetylation
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-
PWY-7118
chitin degradation I (archaea)
-
-
PWY-6855
chitin degradation II (Vibrio)
-
-
PWY-6902
chitin degradation III (Serratia)
-
-
PWY-7822
Citrate cycle (TCA cycle)
-
-
citric acid cycle
-
-
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
-
-
PWY-7854
Cysteine and methionine metabolism
-
-
D-xylose degradation IV
-
-
PWY-7294
ethanol degradation IV
-
-
PWY66-162
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
-
-
PWY-1861
Fructose and mannose metabolism
-
-
Galactose metabolism
-
-
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis III
-
-
PWY66-399
glycerol-3-phosphate to fumarate electron transfer
-
-
PWY0-1582
glycolate and glyoxylate degradation II
-
-
GLYOXDEG-PWY
glycolysis
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-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
-
-
PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
Glyoxylate and dicarboxylate metabolism
-
-
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
hydrogen to fumarate electron transfer
-
-
PWY0-1576
incomplete reductive TCA cycle
-
-
P42-PWY
L-arabinose degradation IV
-
-
PWY-7295
L-arginine degradation II (AST pathway)
-
-
AST-PWY
L-arginine degradation III (arginine decarboxylase/agmatinase pathway)
-
-
PWY0-823
L-arginine degradation V (arginine deiminase pathway)
-
-
ARGDEGRAD-PWY
L-arginine degradation XIII (reductive Stickland reaction)
-
-
PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
-
-
PWY-6344
malate/L-aspartate shuttle pathway
-
-
MALATE-ASPARTATE-SHUTTLE-PWY
Metabolic pathways
-
-
Methane metabolism
-
-
methanol oxidation to formaldehyde IV
-
-
PWY-5506
methylaspartate cycle
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
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-
FERMENTATION-PWY
NADH to fumarate electron transfer
-
-
PWY0-1336
non-pathway related
-
-
Oxidative phosphorylation
-
-
partial TCA cycle (obligate autotrophs)
-
-
PWY-5913
Pentose phosphate pathway
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-
photosynthesis
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-
polyamine pathway
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-
Propanoate metabolism
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-
propionate fermentation
-
-
Purine metabolism
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-
putrescine biosynthesis I
-
-
PWY-40
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive TCA cycle I
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-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
-
-
PWY0-1353
succinate to cytochrome bo oxidase electron transfer
-
-
PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
succinate to plastoquinol oxidase
-
-
PWY1YI0-8
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
-
-
REDCITCYC
TCA cycle VII (acetate-producers)
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-
PWY-7254
TCA cycle VIII (Chlamydia)
-
-
TCA-1
Tryptophan metabolism
-
-
urea cycle
-
-
urea degradation II
-
-
PWY-5704
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LINKS TO OTHER DATABASES (specific for Vogesella indigofera)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA