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Word Map for Organism Lithospermum erythrorhizon
TaxTree of Organism Lithospermum erythrorhizon
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EC NUMBER 
COMMENTARY 
-
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(3R)-linalool biosynthesis
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PWY-7709
(3S)-linalool biosynthesis
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PWY-7141
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
(S)-propane-1,2-diol degradation
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PWY-7013
(S)-reticuline biosynthesis I
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PWY-3581
1,5-anhydrofructose degradation
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PWY-6992
1-butanol autotrophic biosynthesis (engineered)
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PWY-6886
2-nitrotoluene degradation
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PWY-5641
3-(4-hydroxyphenyl)pyruvate biosynthesis
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PWY-5886
3-methyl-branched fatty acid alpha-oxidation
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PWY66-387
3-methylbutanol biosynthesis (engineered)
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PWY-6871
3-phosphoinositide biosynthesis
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PWY-6352
4-coumarate degradation (aerobic)
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PWY-8002
4-coumarate degradation (anaerobic)
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PWY-7046
4-hydroxy-2-nonenal detoxification
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PWY-7112
4-hydroxybenzoate biosynthesis I (eukaryotes)
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PWY-5754
4-hydroxybenzoate biosynthesis II (bacteria)
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PWY-5755
4-hydroxybenzoate biosynthesis III (plants)
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PWY-6435
4-hydroxybenzoate biosynthesis IV (plants)
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PWY-6431
4-hydroxymandelate degradation
6-gingerol analog biosynthesis (engineered)
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PWY-6920
acetaldehyde biosynthesis I
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PWY-6333
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acetylene degradation (anaerobic)
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P161-PWY
adenine and adenosine salvage III
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PWY-6609
adenine and adenosine salvage V
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-
PWY-6611
adenosine nucleotides degradation I
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-
PWY-6596
adenosine nucleotides degradation II
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SALVADEHYPOX-PWY
ajmaline and sarpagine biosynthesis
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PWY-5301
alkane biosynthesis II
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PWY-7033
all-trans-farnesol biosynthesis
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PWY-6859
Amaryllidacea alkaloids biosynthesis
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PWY-7826
ammonia assimilation cycle III
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AMMASSIM-PWY
ammonia oxidation II (anaerobic)
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P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
arachidonate metabolites biosynthesis
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PWY-8397
aromatic biogenic amine degradation (bacteria)
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PWY-7431
arsenic detoxification (plants)
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PWY-8259
arsenic detoxification (yeast)
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PWY-4621
atromentin biosynthesis
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PWY-7518
avenanthramide biosynthesis
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PWY-8157
bacterial bioluminescence
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PWY-7723
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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PWY-6444
Bifidobacterium shunt
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P124-PWY
bisabolene biosynthesis (engineered)
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PWY-7102
bryostatin biosynthesis
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PWY-8047
bupropion degradation
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PWY66-241
butanol and isobutanol biosynthesis (engineered)
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PWY-7396
C20 prostanoid biosynthesis
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PWY66-374
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
caffeoylglucarate biosynthesis
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PWY-6673
camalexin biosynthesis
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CAMALEXIN-SYN
capsaicin biosynthesis
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PWY-5710
catechol degradation to 2-hydroxypentadienoate I
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P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
ceramide and sphingolipid recycling and degradation (yeast)
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PWY-7119
ceramide de novo biosynthesis
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PWY3DJ-12
ceramide degradation (generic)
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PWY-6483
ceramide degradation by alpha-oxidation
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PWY66-388
cinnamoyl-CoA biosynthesis
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PWY-6457
cis-zeatin biosynthesis
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PWY-2781
coumarins biosynthesis (engineered)
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PWY-7398
curcuminoid biosynthesis
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PWY-6432
cutin biosynthesis
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PWY-321
di-homo-gamma-linolenate metabolites biosynthesis
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PWY-8396
diethylphosphate degradation
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PWY-5491
dopamine degradation
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PWY6666-2
dTMP de novo biosynthesis (mitochondrial)
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PWY66-385
Entner-Doudoroff pathway I
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PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
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NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
ephedrine biosynthesis
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PWY-5883
ergothioneine biosynthesis I (bacteria)
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PWY-7255
ethanol degradation I
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ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
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PWY66-21
ethanol degradation IV
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PWY66-162
ethanolamine utilization
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PWY0-1477
ethene biosynthesis I (plants)
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ETHYL-PWY
ethene biosynthesis III (microbes)
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PWY-6854
fatty acid biosynthesis initiation (mitochondria)
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PWY66-429
fatty acid biosynthesis initiation (plant mitochondria)
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PWY-6799
fatty acid biosynthesis initiation (type I)
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PWY-5966-1
fatty acid biosynthesis initiation (type II)
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PWY-4381
fatty acid salvage
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PWY-7094
firefly bioluminescence
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PWY-7913
flavonoid biosynthesis
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PWY1F-FLAVSYN
flavonoid di-C-glucosylation
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PWY-7897
folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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1CMET2-PWY
gamma-glutamyl cycle
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PWY-4041
gamma-linolenate biosynthesis II (animals)
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PWY-6000
geranyl diphosphate biosynthesis
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PWY-5122
gliotoxin biosynthesis
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PWY-7533
glutaminyl-tRNAgln biosynthesis via transamidation
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PWY-5921
glutathione biosynthesis
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GLUTATHIONESYN-PWY
glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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PWY-6842
glutathione-peroxide redox reactions
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PWY-4081
glycerol degradation to butanol
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PWY-7003
glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
gossypol biosynthesis
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PWY-5773
guanosine ribonucleotides de novo biosynthesis
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PWY-7221
heme degradation I
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PWY-5874
heterolactic fermentation
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P122-PWY
homoglutathione biosynthesis
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PWY-6840
hypoglycin biosynthesis
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PWY-5826
icosapentaenoate biosynthesis II (6-desaturase, mammals)
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PWY-7049
icosapentaenoate biosynthesis III (8-desaturase, mammals)
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PWY-7724
icosapentaenoate metabolites biosynthesis
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PWY-8399
indole glucosinolate activation (intact plant cell)
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PWYQT-4477
inosine 5'-phosphate degradation
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PWY-5695
ipsdienol biosynthesis
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PWY-7410
isoprene biosynthesis II (engineered)
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PWY-7391
jadomycin biosynthesis
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PWY-6679
justicidin B biosynthesis
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PWY-6824
L-alanine biosynthesis II
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ALANINE-SYN2-PWY
L-alanine degradation II (to D-lactate)
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ALACAT2-PWY
L-alanine degradation III
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ALANINE-DEG3-PWY
L-alanine degradation V (oxidative Stickland reaction)
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PWY-8189
L-alanine degradation VI (reductive Stickland reaction)
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PWY-8188
L-asparagine biosynthesis III (tRNA-dependent)
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PWY490-4
L-citrulline biosynthesis
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CITRULBIO-PWY
L-dopa and L-dopachrome biosynthesis
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PWY-6481
L-glutamate biosynthesis I
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GLUTSYN-PWY
L-glutamine degradation I
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GLUTAMINDEG-PWY
L-histidine degradation V
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PWY-5031
L-isoleucine degradation II
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PWY-5078
L-leucine degradation III
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PWY-5076
L-methionine degradation III
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PWY-5082
L-methionine salvage cycle II (plants)
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PWY-7270
L-phenylalanine degradation III
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PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
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PWY-6318
L-serine biosynthesis II
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PWY-8011
L-tryptophan degradation V (side chain pathway)
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PWY-3162
L-tryptophan degradation VI (via tryptamine)
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PWY-3181
L-tryptophan degradation X (mammalian, via tryptamine)
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PWY-6307
L-tyrosine biosynthesis I
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TYRSYN
L-tyrosine degradation I
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TYRFUMCAT-PWY
L-tyrosine degradation II
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PWY-5151
L-tyrosine degradation III
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PWY3O-4108
L-tyrosine degradation IV (to 4-methylphenol)
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PWY-7514
L-tyrosine degradation V (reductive Stickland reaction)
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PWY-8016
L-valine degradation II
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PWY-5057
leukotriene biosynthesis
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PWY66-375
linalool biosynthesis I
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PWY-7182
linoleate biosynthesis II (animals)
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PWY-6001
long chain fatty acid ester synthesis (engineered)
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PWY-6873
long-chain fatty acid activation
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PWY-5143
matairesinol biosynthesis
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PWY-5466
melatonin degradation I
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PWY-6398
melatonin degradation II
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PWY-6399
methanol oxidation to formaldehyde IV
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PWY-5506
methyl phomopsenoate biosynthesis
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PWY-7721
mevalonate pathway I (eukaryotes and bacteria)
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PWY-922
mevalonate pathway II (haloarchaea)
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PWY-6174
mevalonate pathway III (Thermoplasma)
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PWY-7524
mevalonate pathway IV (archaea)
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PWY-8125
mitochondrial L-carnitine shuttle
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PWY-6111
mixed acid fermentation
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FERMENTATION-PWY
mono-trans, poly-cis decaprenyl phosphate biosynthesis
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PWY-6383
mupirocin biosynthesis
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PWY-8012
mycobactin biosynthesis
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PWY185E-1
naringenin biosynthesis (engineered)
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PWY-7397
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction VII (denitrification)
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PWY-6748
nitric oxide biosynthesis II (mammals)
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PWY-4983
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
nocardicin A biosynthesis
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PWY-7797
noradrenaline and adrenaline degradation
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PWY-6342
o-diquinones biosynthesis
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PWY-6752
octane oxidation
oleandomycin activation/inactivation
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PWY-6972
oleate beta-oxidation
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PWY0-1337
oleate biosynthesis I (plants)
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PWY-5147
oleate biosynthesis II (animals and fungi)
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PWY-5996
ophthalmate biosynthesis
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PWY-8043
p-HBAD biosynthesis
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PWY-7745
palmitate biosynthesis II (type II fatty acid synthase)
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PWY-5971
palmitate biosynthesis III
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PWY-8279
palmitoleate biosynthesis IV (fungi and animals)
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PWY3O-1801
pederin biosynthesis
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PWY-8049
pentachlorophenol degradation
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PCPDEG-PWY
peptido-conjugates in tissue regeneration biosynthesis
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PWY-8355
phaselate biosynthesis
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PWY-6320
phenolphthiocerol biosynthesis
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PWY-7742
phenylethanol biosynthesis
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PWY-5751
phenylethylamine degradation I
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2PHENDEG-PWY
phenylpropanoid biosynthesis
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PWY-361
phenylpropanoid biosynthesis, initial reactions
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PWY1F-467
pheomelanin biosynthesis
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PWY-7917
phosphatidylcholine acyl editing
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PWY-6803
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
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PWY-7218
phytol degradation
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PWY66-389
polybrominated dihydroxylated diphenyl ethers biosynthesis
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PWY-7934
polybrominated phenols biosynthesis
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PWY-7929
protein ubiquitination
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PWY-7511
purine deoxyribonucleosides degradation I
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PWY-7179
purine deoxyribonucleosides degradation II
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PWY-7179-1
purine ribonucleosides degradation
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PWY0-1296
putrescine degradation III
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PWY-0
pyruvate fermentation to (R)-lactate
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PWY-8274
pyruvate fermentation to (S)-lactate
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PWY-5481
pyruvate fermentation to ethanol I
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PWY-5480
pyruvate fermentation to ethanol II
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PWY-5486
pyruvate fermentation to ethanol III
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PWY-6587
pyruvate fermentation to isobutanol (engineered)
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PWY-7111
reactive oxygen species degradation
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DETOX1-PWY-1
retinol biosynthesis
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PWY-6857
rosmarinic acid biosynthesis I
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PWY-5048
rosmarinic acid biosynthesis II
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PWY-5049
Rubisco shunt
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PWY-5723
S-(6-hydroxy-4-methylhexan-4-yl)-L-cysteinylglycine biosynthesis
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PWY-8301
salidroside biosynthesis
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PWY-6802
saponin biosynthesis II
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PWY-5756
serotonin degradation
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PWY-6313
sesamin biosynthesis
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PWY-5469
shikonin biosynthesis
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PWY-5701
sorgoleone biosynthesis
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PWY-5987
sphingolipid biosynthesis (plants)
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PWY-5129
sphingolipid biosynthesis (yeast)
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SPHINGOLIPID-SYN-PWY
sphingosine and sphingosine-1-phosphate metabolism
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PWY3DJ-11470
spongiadioxin C biosynthesis
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PWY-7935
sporopollenin precursors biosynthesis
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PWY-6733
stearate biosynthesis I (animals)
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PWY-5972
stearate biosynthesis II (bacteria and plants)
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PWY-5989
stearate biosynthesis IV
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PWY-8280
stellatic acid biosynthesis
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PWY-7736
sterol:steryl ester interconversion (yeast)
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PWY-7424
strychnine biosynthesis
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PWY-8216
suberin monomers biosynthesis
superoxide radicals degradation
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DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of glucose and xylose degradation
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PWY-6901
tetrahydrofolate biosynthesis I
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PWY-6614
tetrahydromethanopterin biosynthesis
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PWY-6148
thioredoxin pathway
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THIOREDOX-PWY
thyroid hormone metabolism II (via conjugation and/or degradation)
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PWY-6261
toluene degradation II (aerobic) (via 4-methylcatechol)
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TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
-
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TOLUENE-DEG-2-OH-PWY
trans, trans-farnesyl diphosphate biosynthesis
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PWY-5123
trans-caffeate degradation (aerobic)
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PWY-8003
triacylglycerol degradation
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LIPAS-PWY
ubiquinol-8 biosynthesis (late decarboxylation)
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PWY-5870
umbelliferone biosynthesis
-
-
PWY-6982
vancomycin resistance I
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PWY-6454
vanillin biosynthesis I
-
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PWY-5665
vindoline, vindorosine and vinblastine biosynthesis
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PWY-5292
viridicatumtoxin biosynthesis
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-
PWY-7659
wax esters biosynthesis II
-
-
PWY-5885
xanthohumol biosynthesis
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PWY-5135
4-hydroxymandelate degradation
-
-
4-HYDROXYMANDELATE-DEGRADATION-PWY
octane oxidation
-
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P221-PWY
suberin monomers biosynthesis
-
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PWY-1121
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ORGANISM
COMMENTARY
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
the used cell line is induced from the root of Lithospermum erythrorhizon plants, cell line 622-46. A 4fold enhancement of shikonin (secondary metabolite) production is observable after a gamma radiation at the callus at 16 Gy. When the activity of p-hydroxybenzoic acid geranyltransferase is high with low activity of p-hydroxylbenzoic acid glucosyltransferase, the process of shikonin biosynthesis is boosted.
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
SOURCE
the mRNA of the LePGT-1 gene is undetectable in aerial plant tissues, and is exclusively detected in root tissues, similar to shikonin accumulation
the mRNA of the LePGT-2 gene is undetectable in aerial plant tissues, and is exclusively detected in root tissues, similar to shikonin accumulation
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY
GeneOntology No.
LITERATURE
SOURCE
LINKS TO OTHER DATABASES (specific for Lithospermum erythrorhizon)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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