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Gene ontology
Version 2014-12-22
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Details for retroviral 3' processing activity
Gene ontology ID
GO:0044824
Definition
The catalysis of the removal of two di- or tri-nucleotides from each 3' end of double-stranded viral DNA, exposing recessed 3' hydroxyls
Comment
This reaction may serve to remove heterogeneous extra bases from the viral DNA end, and to stabilize the integrase-DNA complex. The chemistry of cleavage is a simple hydrolysis by single-step transesterification.
Synonyms
1. 3' processing reaction
2. 3'-processing activity
References
1. PMID 22580823
2. Reactome: R-HSA-164522
Legend
is an element of the parent element
is a part of the parent element
is related to the parent element
derives from the parent element
// at least 1 tissue/ enzyme/ localization link in this branch
// tissue/ enzyme/ localization link to BRENDA
Condensed Tree View
Gene ontology
biological_process is a
cellular process is a
cellular metabolic process is a
cellular aromatic compound metabolic process is a
nucleobase-containing compound metabolic process is a
nucleic acid metabolic process is a
DNA metabolic process is a
deoxyribonuclease activity part of
endodeoxyribonuclease activity is a
endodeoxyribonuclease activity, producing 5'-phosphomonoesters is a
retroviral 3' processing activity is a
Tree view
Gene ontology
biological_process is a
behavior is a
biological adhesion is a
biological phase is a
biological regulation is a
biomineralization is a
carbohydrate utilization is a
carbon utilization is a
cellular process is a
actin filament-based process is a
cell activation is a
cell adhesion molecule production is a
cell aggregation is a
cell communication is a
cell cycle is a
cell death is a
cell division is a
cell growth is a
cell killing is a
cell population proliferation is a
cell recognition is a
cell wall organization or biogenesis is a
cell-cell fusion is a
cellular component organization or biogenesis is a
cellular detoxification is a
cellular developmental process is a
cellular localization is a
cellular metabolic process is a
bioluminescence is a
cellular alcohol metabolic process is a
cellular aldehyde metabolic process is a
cellular alkane metabolic process is a
cellular alkene metabolic process is a
cellular alkyne metabolic process is a
cellular aromatic compound metabolic process is a
(+)-kotanin metabolic process is a
2,5-dihydroxypyridine metabolic process is a
3-(3-hydroxy)phenylpropionate metabolic process is a
3-methylquinoline metabolic process is a
5-methylcytosine metabolic process is a
aromatic amino acid family metabolic process is a
aromatic compound biosynthetic process is a
aromatic compound catabolic process is a
aromatic primary alcohol metabolic process is a
benzene-containing compound metabolic process is a
carbazole metabolic process is a
cocaine metabolic process is a
coniferin metabolic process is a
daunorubicin metabolic process is a
demethylkotanin metabolic process is a
dibenzo-p-dioxin metabolic process is a
dibenzofuran metabolic process is a
doxorubicin metabolic process is a
epothilone metabolic process is a
fluorene metabolic process is a
imidazole-containing compound metabolic process is a
indole-containing compound metabolic process is a
isoquinoline alkaloid metabolic process is a
kynurenic acid metabolic process is a
naphthalene-containing compound metabolic process is a
nicotinate metabolic process is a
nucleobase-containing compound metabolic process is a
GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolic process is a
nucleic acid metabolic process is a
DNA metabolic process is a
base-excision repair, AP site formation is a
base-excision repair, base-free sugar-phosphate removal is a
base-excision repair, gap-filling is a
deoxyribonuclease activity part of
endodeoxyribonuclease activity is a
double-stranded DNA endodeoxyribonuclease activity is a
endodeoxyribonuclease activity, producing 3'-phosphomonoesters is a
endodeoxyribonuclease activity, producing 5'-phosphomonoesters is a
5'-flap endonuclease activity is a
CC-preferring endodeoxyribonuclease activity is a
class II DNA-(apurinic or apyrimidinic site) endonuclease activity is a
deoxyribonuclease I activity is a
deoxyribonuclease IV (phage-T4-induced) activity is a
deoxyribonuclease V activity is a
type I site-specific deoxyribonuclease activity is a
type II site-specific deoxyribonuclease activity is a
type III site-specific deoxyribonuclease activity is a
excinuclease ABC activity is a
flap endonuclease activity is a
removal of nonhomologous ends
restriction endodeoxyribonuclease activity is a
retroviral 3' processing activity is a
single-stranded DNA endodeoxyribonuclease activity is a
site-specific endodeoxyribonuclease activity, specific for altered base is a
T/G mismatch-specific endonuclease activity is a
exodeoxyribonuclease activity is a
oligodeoxyribonucleotidase activity is a
DNA excision is a
DNA integration is a
DNA ligation is a
DNA modification is a
DNA recombination is a
DNA repair is a
G-quadruplex DNA formation is a
heteroduplex formation is a
programmed DNA elimination is a
nucleic acid phosphodiester bond hydrolysis is a
RNA metabolic process is a
nucleobase-containing small molecule metabolic process is a
polynucleotide dephosphorylation is a
ommochrome metabolic process is a
orlandin metabolic process is a
phenanthrene metabolic process is a
phenol-containing compound metabolic process is a
phenylpropanoid metabolic process is a
picolinic acid metabolic process is a
pteridine-containing compound metabolic process is a
purine-containing compound metabolic process is a
pyridine metabolic process is a
pyridoxamine metabolic process is a
pyridoxine metabolic process is a
s-triazine compound metabolic process is a
sterigmatocystin metabolic process is a
stilbene metabolic process is a
tetrapyrrole metabolic process is a
thiamine diphosphate metabolic process is a
thiamine-containing compound metabolic process is a
thiazole metabolic process is a
verruculogen metabolic process is a
vibriobactin metabolic process is a
cellular biosynthetic process is a
cellular carbohydrate metabolic process is a
cellular catabolic process is a
cellular ketone body metabolic process is a
cellular ketone metabolic process is a
cellular lipid metabolic process is a
cellular macromolecule metabolic process is a
cellular metabolic compound salvage is a
cellular modified amino acid metabolic process is a
cellular nitrogen compound metabolic process is a
cellular organohalogen metabolic process is a
chemosynthesis is a
cofactor metabolic process is a
drug metabolic process is a
generation of precursor metabolites and energy is a
heterocycle metabolic process is a
hydroperoxide metabolic process is a
metabolite repair is a
mucilage metabolic process is a
one-carbon metabolic process is a
organic acid metabolic process is a
organometal metabolic process is a
phosphorus metabolic process is a
photosynthesis is a
prenylation is a
reactive oxygen species metabolic process is a
selenium compound metabolic process is a
sulfur compound metabolic process is a
toxin metabolic process is a
xenobiotic metabolic process is a
cellular pigmentation is a
cellular process involved in reproduction in multicellular organism is a
cellular response to stimulus is a
chromosome segregation is a
cytolysis is a
DNA clamp unloading is a
ensheathment of neurons is a
establishment or maintenance of cell polarity is a
establishment or maintenance of cell type involved in phenotypic switching is a
export from cell is a
intercellular transport is a
intermediate filament-based process is a
light absorption is a
localization of cell is a
membrane docking is a
microtubule organizing center localization is a
microtubule-based process is a
movement of cell or subcellular component is a
multi-organism cellular process is a
phenotypic switching is a
plasmid maintenance is a
process utilizing autophagic mechanism is a
protein folding is a
protein unfolding is a
RNA folding is a
signaling receptor ligand precursor processing is a
stomatal movement is a
syncytium formation is a
transmembrane transport is a
transposition is a
vacuolar transport is a
vesicle-mediated transport is a
detoxification is a
developmental process is a
growth is a
immune system process is a
interspecies interaction between organisms is a
intraspecies interaction between organisms is a
localization is a
locomotion is a
metabolic process is a
multi-organism process is a
multicellular organismal process is a
pigmentation is a
reproduction is a
response to stimulus is a
rhythmic process is a
signaling is a
cellular_component is a
molecular_function is a