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Information on EC 2.7.7.72 - CCA tRNA nucleotidyltransferase and Organism(s) Escherichia coli and UniProt Accession P06961

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EC Tree
IUBMB Comments
The acylation of all tRNAs with an amino acid occurs at the terminal ribose of a 3' CCA sequence. The CCA sequence is added to the tRNA precursor by stepwise nucleotide addition performed by a single enzyme that is ubiquitous in all living organisms. Although the enzyme has the option of releasing the product after each addition, it prefers to stay bound to the product and proceed with the next addition .
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This record set is specific for:
Escherichia coli
UNIPROT: P06961
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Word Map
The taxonomic range for the selected organisms is: Escherichia coli
The enzyme appears in selected viruses and cellular organisms
Reaction Schemes
hide(3 overall reactions are displayed. Show all (4)>>)
a tRNA precursor
+
=
a tRNA with a 3' cytidine end
+
a tRNA with a 3' cytidine
+
=
a tRNA with a 3' CC end
+
a tRNA with a 3' CC end
+
=
a tRNA with a 3' CCA end
+
Synonyms
cca-adding enzyme, trnt1, cca enzyme, cca1p, atp(ctp):trna nucleotidyltransferase, trna-nt, class i cca-adding enzyme, ccase, afcca, ctp(atp):trna nucleotidyltransferase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ATP(CTP):tRNA nucleotidyltransferase
-
tRNA nucleotidyltransferase
-
-C-C-A pyrophosphorylase
-
-
-
-
adenylyl (cytidylyl)-tRNA nucleotidyltransferase
-
-
ATP(CTP)-tRNA nucleotidyltransferase
-
-
-
-
ATP(CTP): tRNA adenylyl (cytidylyl)transferase
-
-
ATP(CTP):tRNA nucleotidyltransferase
-
-
ATP:tRNA adenylyltransferase
-
-
-
-
ATP:tRNA nucleotidyltransferase (CTP)
-
-
-
-
CCA enzyme
-
-
CCA-adding enzyme
-
-
class 2 tRNA-nucleotidyltransferase
-
-
class II CCA
-
-
class II CCA adding enzyme
-
-
class II CCA enzyme
-
-
CTP(ATP):tRNA nucleotidyltransferase
-
-
-
-
CTP:tRNA cytidylyltransferase
-
-
-
-
ribonucleic cytidylic cytidylic adenylic pyrophosphorylase
-
-
-
-
ribonucleic cytidylyltransferase
-
-
-
-
transfer ribonucleate adenyltransferase
-
-
-
-
transfer ribonucleate adenylyltransferase
-
-
-
-
transfer ribonucleate adenylyltransferase,
-
-
-
-
transfer ribonucleate cytidylyltransferase
-
-
-
-
transfer ribonucleate nucleotidyltransferase
-
-
-
-
transfer ribonucleic acid nucleotidyl transferase
-
-
-
-
transfer ribonucleic adenylyl (cytidylyl) transferase
-
-
-
-
transfer ribonucleic-terminal trinucleotide nucleotidyltransferase
-
-
-
-
transfer RNA adenylyltransferase
-
-
-
-
transfer-RNA nucleotidyltransferase
-
-
-
-
tRNA adenylyl(cytidylyl)transferase
-
-
-
-
tRNA adenylyltransferase
-
-
-
-
tRNA CCA-pyrophosphorylase
-
-
-
-
tRNA cytidylyltransferase
-
-
-
-
tRNA nucleotidyltransferase
-
-
tRNA-nucleotidyltransferase
-
-
-
-
additional information
-
the CCA-adding enzymes belong to the nucleotidyltransferase superfamily
SYSTEMATIC NAME
IUBMB Comments
CTP,CTP,ATP:tRNA cytidylyl,cytidylyl,adenylyltransferase
The acylation of all tRNAs with an amino acid occurs at the terminal ribose of a 3' CCA sequence. The CCA sequence is added to the tRNA precursor by stepwise nucleotide addition performed by a single enzyme that is ubiquitous in all living organisms. Although the enzyme has the option of releasing the product after each addition, it prefers to stay bound to the product and proceed with the next addition [5].
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
show the reaction diagram
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
show the reaction diagram
tRNAAsp with a 3' CC end + ATP
tRNAAsp with a 3' CCA end + diphosphate
show the reaction diagram
-
usage of tRNAAsp of Bacillus subtilis as substrate, and 5'-labeled tRNA-C and 3'-labeled tRNA-CC alkylated by ethylnitrosourea
-
-
?
tRNAAsp with a 3' cytidine + CTP
tRNAAsp with a 3' CC end + diphosphate
show the reaction diagram
-
usage of tRNAAsp of Bacillus subtilis as substrate, and 5'-labeled tRNA-C and 3'-labeled tRNA-CC alkylated by ethylnitrosourea
-
-
?
tRNAX1 + ATP + 2 CTP
tRNAXCCA + 3 diphosphate
show the reaction diagram
-
only one protein is responsible for both AMP and CMP incorporation
-
-
r
yeast tRNAPhe + 2 CTP + ATP
yeast tRNAPhe with 3'-CCA end + 3 diphosphate
show the reaction diagram
-
preparation of substrate lacking the CCA-terminus or ending with a partial CCA-end
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
show the reaction diagram
-
-
-
-
r
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
show the reaction diagram
-
-
-
-
r
additional information
?
-
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Mn2+
-
while Mn2+ is incompetent for diphosphorolysis of tRNA-A76, it promotes a more rapid forward synthesis of tRNA-A76 than even the Mg2+ ion
Zn2+
-
it is inert for diphosphorolysis of tRNAA76, but it is active in the forward synthesis of this tRNA
additional information
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1,10-phenanthroline
-
inhibition of AMP incorporating activity only, the CMP incorporating activity is much less sensitive
1,7-phenanthroline
-
slight inhibition
2,2,2-Terpyridyl
-
inhibition of AMP incorporating activity only, the CMP incorporating activity is much less sensitive
2,2-dipyridyl
-
at high concentrations, inhibition of AMP incorporating activity only, the CMP incorporating activity is much less sensitive
bathophenanthroline
-
inhibition of AMP incorporating activity only, the CMP incorporating activity is much less sensitive
ethylnitrosourea
-
both CTP addition to tRNA-C and ATP addition to tRNA-CC are dramatically inhibited by alkylation of the same tRNA phosphates in the acceptor stem and TPsiC stem-loop
Neocuproine
-
slight inhibition
additional information
-
no inhibition by EDTA
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
protein Hfq
-
the multifunctional protein Hfq, originally discovered as a host factor for phage Qb, can stimulate the CCA-adding activity, Hfq facilitates the release of the reaction product, after CCA addition has taken place
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.5 - 1
diphosphate
additional information
additional information
-
kinetic parameters of diphosphorolysis from A76, C75, and C74, overview
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.4 - 3.1
diphosphate
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.4 - 5.2
diphosphate
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
280
-
purified enzyme, pH not specified in the publication, 37°C, column peak fraction
67.1
-
purified enzyme, pH not specified in the publication, 37°C, pooled column fraction
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
25
-
assay at
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
5.85
-
both AMP- and CMP-incorporating activities, isoelectric focusing
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
SwissProt
Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
physiological function
in all mature tRNAs, the 3'-terminal CCA sequence is synthesized or repaired by the template-independent nucleotidyltransferase ATP(CTP):tRNA nucleotidyltransferase. The phosphohydrolase activities of the HD domain of the tRNA nucleotidyltransferase are involved in the repair of the 3'-CCA end of tRNA, modeling, overview
evolution
malfunction
metabolism
-
under exponential growth conditions, a significant fraction of tRNAs with damaged CCA-tails is found and this fraction decreases upon transition into stationary phase. tRNAs bearing guanine as a discriminator base are generally unaffected by CCA-tail damage. The knockout of the repairing CCA-adding enzyme significantly reduces tRNA integrity, and tRNACys integrity is reduced from 82% in wild-type to 40% in the knockout strain. Even slight reduction of CCA integrity in exponential phase tRNA results in reduced protein synthesis
physiological function
additional information
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
51500
-
1 * 51500, SDS-PAGE
53000
-
gel filtration
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
monomer
-
1 * 51500, SDS-PAGE
additional information
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
crystal structure analysis
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant His-tagged HD domain from Escherichia coli strain BL21 (DE3) by nickel affinity chromatography
native enzyme 11800fold by ammonium sulfate fractionation, anion exchange and hydroxylapatite chromatography, and tRNA affinity chromatography
-
recombinant C-terminally His-tagged enzyme from Escherichia coli
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant expression of the isolated His-tagged HD domain in Escherichia coli strain BL21 (DE3)
expression in Escherichia coli
-
overexpression of C-terminally His-tagged enzyme in Escherichia coli
-
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
analysis
-
development of a tRNA sequencing method that is specifically tailored to assess the 3'-termini of Escherichia coli tRNA
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Schofield, P.; Williams, K.R.
Purification and some properties of Escherichia coli tRNA nucleotidyltransferase
J. Biol. Chem.
252
5584-5588
1977
Escherichia coli, Escherichia coli B / ATCC 11303
Manually annotated by BRENDA team
Shi, P.Y.; Maizels, N.; Weiner, A.M.
CCA addition by tRNA nucleotidyltransferase: polymerization without translocation?
EMBO J.
17
3197-3206
1998
Escherichia coli, Saccharolobus shibatae
Manually annotated by BRENDA team
Yakunin, A.F.; Proudfoot, M.; Kuznetsova, E.; Savchenko, A.; Brown, G.; Arrowsmith, C.H.; Edwards, A.M.
The HD domain of the E. coli tRNA nucleotidyltransferase has 2',3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase activities
J. Biol. Chem.
279
36819-36827
2004
Escherichia coli (P06961), Escherichia coli
Manually annotated by BRENDA team
Hoffmeier, A.; Betat, H.; Bluschke, A.; Gunther, R.; Junghanns, S.; Hofmann, H.J.; Morl, M.
Unusual evolution of a catalytic core element in CCA-adding enzymes
Nucleic Acids Res.
38
4436-4447
2010
Geobacillus stearothermophilus, Escherichia coli, Homo sapiens (Q96Q11)
Manually annotated by BRENDA team
Mrl, M.; Betat, H.; Rammelt, C.
TRNA nucleotidyltransferases: ancient catalysts with an unusual mechanism of polymerization
Cell. Mol. Life Sci.
67
1447-1463
2010
Archaeoglobus fulgidus, Escherichia coli, Geobacillus stearothermophilus, Homo sapiens, Saccharolobus shibatae, Thermotoga maritima, Thermus thermophilus
Manually annotated by BRENDA team
Vrtler, S.; Mrl, M.
tRNA-nucleotidyltransferases: Highly unusual RNA polymerases with vital functions
FEBS Lett.
584
297-302
2010
Aquifex aeolicus, Archaea, Caldanaerobacter subterraneus subsp. tengcongensis, Deinococcus radiodurans, Escherichia coli, Halalkalibacterium halodurans, Homo sapiens, Thermus thermophilus
Manually annotated by BRENDA team
Igarashi, T.; Liu, C.; Morinaga, H.; Kim, S.; Hou, Y.
Pyrophosphorolysis of CCA addition: implication for fidelity
J. Mol. Biol.
414
28-43
2011
Archaeoglobus fulgidus, Escherichia coli, Homo sapiens
Manually annotated by BRENDA team
Czech, A.
Deep sequencing of tRNAs 3-termini sheds light on CCA-tail integrity and maturation
RNA
26
199-208
2020
Escherichia coli, Escherichia coli CA244
Manually annotated by BRENDA team