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0.00061 - 0.0467
(2E,6E)-farnesyl diphosphate
0.0014 - 0.0044
(E,E)-farnesyl diphosphate
0.0003 - 0.048
isopentenyl diphosphate
0.0008 - 0.267
isopentenyl diphosphate
0.0004 - 0.0051
trans,trans-farnesyl diphosphate
additional information
additional information
-
kinetics of wild-type and mutant enzymes
-
0.00061
(2E,6E)-farnesyl diphosphate
mutant N101A/Y105A, pH 7.5, 25°C
0.0025
(2E,6E)-farnesyl diphosphate
mutant H139A, pH 7.5, 25°C
0.0037
(2E,6E)-farnesyl diphosphate
wild-type enzyme, pH 7.5, 25°C
0.0037
(2E,6E)-farnesyl diphosphate
mutant M111A, pH 7.5, 25°C
0.0055
(2E,6E)-farnesyl diphosphate
mutant N104A, pH 7.5, 25°C
0.0063
(2E,6E)-farnesyl diphosphate
mutant N101A, pH 7.5, 25°C
0.0077
(2E,6E)-farnesyl diphosphate
mutant Y105A, pH 7.5, 25°C
0.0089
(2E,6E)-farnesyl diphosphate
mutant R140A, pH 7.5, 25°C
0.009
(2E,6E)-farnesyl diphosphate
mutant M111E, pH 7.5, 25°C
0.0146
(2E,6E)-farnesyl diphosphate
mutant M111F, pH 7.5, 25°C
0.0153
(2E,6E)-farnesyl diphosphate
mutant N101A/N104A, pH 7.5, 25°C
0.0467
(2E,6E)-farnesyl diphosphate
mutant N104A/Y105A, pH 7.5, 25°C
0.0014
(E,E)-farnesyl diphosphate
mutant DELTA1-7, pH 7.5, 25°C
0.0019
(E,E)-farnesyl diphosphate
mutant DELTA1-9, pH 7.5, 25°C
0.0024
(E,E)-farnesyl diphosphate
mutant L8G, pH 7.5, 25°C
0.0026
(E,E)-farnesyl diphosphate
mutant DELTA1-8, pH 7.5, 25°C
0.0028
(E,E)-farnesyl diphosphate
mutant E7G/L8G, pH 7.5, 25°C
0.0031
(E,E)-farnesyl diphosphate
mutant L8G/I9G, pH 7.5, 25°C
0.0032
(E,E)-farnesyl diphosphate
wild-type, pH 7.5, 25°C
0.0036
(E,E)-farnesyl diphosphate
mutant I9G, pH 7.5, 25°C
0.0043
(E,E)-farnesyl diphosphate
mutant DELTA1-6, pH 7.5, 25°C
0.0044
(E,E)-farnesyl diphosphate
mutant E7G, pH 7.5, 25°C
0.0003
isopentenyl diphosphate
mutant E7G/L8G, pH 7.5, 25°C
0.0004
isopentenyl diphosphate
mutant DELTA1-7, pH 7.5, 25°C
0.0004
isopentenyl diphosphate
mutant E7G, pH 7.5, 25°C
0.0005
isopentenyl diphosphate
mutant DELTA1-8, pH 7.5, 25°C
0.0005
isopentenyl diphosphate
mutant L8G, pH 7.5, 25°C
0.0006
isopentenyl diphosphate
mutant DELTA1-6, pH 7.5, 25°C
0.0006
isopentenyl diphosphate
mutant L8G/I9G, pH 7.5, 25°C
0.00061
isopentenyl diphosphate
mutant N101A/Y105A, pH 7.5, 25°C
0.0007
isopentenyl diphosphate
mutant I9G, pH 7.5, 25°C
0.0008
isopentenyl diphosphate
wild-type, pH 7.5, 25°C
0.0014
isopentenyl diphosphate
mutant DELTA1-9, pH 7.5, 25°C
0.0017
isopentenyl diphosphate
wild-type enzyme, pH 7.5, 25°C
0.0025
isopentenyl diphosphate
mutant M111A, pH 7.5, 25°C
0.0026
isopentenyl diphosphate
mutant Y105A, pH 7.5, 25°C
0.0045
isopentenyl diphosphate
mutant R140A, pH 7.5, 25°C
0.0051
isopentenyl diphosphate
mutant H139A, pH 7.5, 25°C
0.0055
isopentenyl diphosphate
mutant N104A, pH 7.5, 25°C
0.0066
isopentenyl diphosphate
mutant M111E, pH 7.5, 25°C
0.0081
isopentenyl diphosphate
mutant N104A/Y105A, pH 7.5, 25°C
0.0113
isopentenyl diphosphate
mutant M111F, pH 7.5, 25°C
0.0292
isopentenyl diphosphate
mutant N101A/N104A, pH 7.5, 25°C
0.048
isopentenyl diphosphate
mutant N101A, pH 7.5, 25°C
0.0008
isopentenyl diphosphate
-
pH 7.5, 25°C, recombinant wild-type enzyme
0.0027
isopentenyl diphosphate
-
pH 7.5, 25°C, recombinant mutant F108A
0.0033
isopentenyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/F108A
0.0047
isopentenyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A
0.0051
isopentenyl diphosphate
-
pH 7.5, 25°C, recombinant mutant H139A
0.017
isopentenyl diphosphate
-
pH 7.5, 25°C, recombinant mutant L135A/H139A
0.051
isopentenyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/F108A/L135A/H139A
0.097
isopentenyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/F108A/H139A
0.136
isopentenyl diphosphate
-
pH 7.5, 25°C, recombinant mutant F108A/H139A
0.267
isopentenyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/H139A
0.0004
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/F108A/H139A
0.001
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/F108A/L135A/H139A
0.0011
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/H139A
0.0017
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A
0.0021
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant F108A
0.0025
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant H139A
0.0026
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/F108A
0.0027
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant L135A/H139A
0.0032
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant wild-type enzyme
0.0051
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant F108A/H139A
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0.00013 - 0.11
(2E,6E)-farnesyl diphosphate
0.000042 - 0.025
(E,E)-farnesyl diphosphate
0.00013 - 0.11
isopentenyl diphosphate
1.6 - 8.4
trans,trans-farnesyl diphosphate
0.00013
(2E,6E)-farnesyl diphosphate
mutant N101A/Y105A, pH 7.5, 25°C
0.0002
(2E,6E)-farnesyl diphosphate
mutant N101A/N104A, pH 7.5, 25°C
0.017
(2E,6E)-farnesyl diphosphate
mutant N104A/Y105A, pH 7.5, 25°C
0.02
(2E,6E)-farnesyl diphosphate
mutant M111E, pH 7.5, 25°C
0.036
(2E,6E)-farnesyl diphosphate
mutant M111F, pH 7.5, 25°C
0.037
(2E,6E)-farnesyl diphosphate
wild-type enzyme, pH 7.5, 25°C
0.038
(2E,6E)-farnesyl diphosphate
mutant R140A, pH 7.5, 25°C
0.04
(2E,6E)-farnesyl diphosphate
mutant M111A, pH 7.5, 25°C
0.042
(2E,6E)-farnesyl diphosphate
mutant H139A, pH 7.5, 25°C
0.06
(2E,6E)-farnesyl diphosphate
mutant Y105A, pH 7.5, 25°C
0.067
(2E,6E)-farnesyl diphosphate
mutant N101A, pH 7.5, 25°C
0.11
(2E,6E)-farnesyl diphosphate
mutant N104A, pH 7.5, 25°C
0.000042
(E,E)-farnesyl diphosphate
mutant DELTA1-9, pH 7.5, 25°C
0.000066
(E,E)-farnesyl diphosphate
mutant DELTA1-8, pH 7.5, 25°C
0.000072
(E,E)-farnesyl diphosphate
mutant L8G/I9G, pH 7.5, 25°C
0.00015
(E,E)-farnesyl diphosphate
mutant E7G/L8G, pH 7.5, 25°C
0.00062
(E,E)-farnesyl diphosphate
mutant I9G, pH 7.5, 25°C
0.0051
(E,E)-farnesyl diphosphate
mutant L8G, pH 7.5, 25°C
0.0073
(E,E)-farnesyl diphosphate
mutant DELTA1-7, pH 7.5, 25°C
0.018
(E,E)-farnesyl diphosphate
mutant DELTA1-6, pH 7.5, 25°C
0.021
(E,E)-farnesyl diphosphate
mutant E7G, pH 7.5, 25°C
0.025
(E,E)-farnesyl diphosphate
wild-type, pH 7.5, 25°C
0.00013
isopentenyl diphosphate
mutant N101A/Y105A, pH 7.5, 25°C
0.0002
isopentenyl diphosphate
mutant N101A/N104A, pH 7.5, 25°C
0.017
isopentenyl diphosphate
mutant N104A/Y105A, pH 7.5, 25°C
0.02
isopentenyl diphosphate
mutant M111E, pH 7.5, 25°C
0.036
isopentenyl diphosphate
mutant M111F, pH 7.5, 25°C
0.037
isopentenyl diphosphate
wild-type enzyme, pH 7.5, 25°C
0.038
isopentenyl diphosphate
mutant R140A, pH 7.5, 25°C
0.04
isopentenyl diphosphate
mutant M111A, pH 7.5, 25°C
0.042
isopentenyl diphosphate
mutant H139A, pH 7.5, 25°C
0.06
isopentenyl diphosphate
mutant Y105A, pH 7.5, 25°C
0.067
isopentenyl diphosphate
mutant N101A, pH 7.5, 25°C
0.11
isopentenyl diphosphate
mutant N104A, pH 7.5, 25°C
1.6
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant F108A/H139A
2.5
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant wild-type enzyme
2.5
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/F108A/H139A
3.9
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/H139A
4.2
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant H139A
4.7
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant F108A
4.9
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/F108A
5.6
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A
6.4
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant L135A/H139A
8.4
trans,trans-farnesyl diphosphate
-
pH 7.5, 25°C, recombinant mutant Y107A/F108A/L135A/H139A
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hanging drop method, X-ray crystallographic structures of the N-[methyl(4-phenylbutyl)]-3-aminopropyl-1-hydroxy-1,1-bisphosphonate, bound to geranylgeranyl diphosphate synthase
structures of enzyme-inhibitor complexes with isopentenyl diphosphate, geranyl diphosphate, farnesyl diphosphate, geranylgeranyl diphosphate, zoledronate, minodronate, BPH-629, BPH-364, and BPH-675
the 3D structure of GGPPS reveals an unique positioning of the N-terminal helix A, which protrudes into the other subunit and stabilizes dimerization, although it is far from the main dimer interface. The replacement of residues L8 and I9 at this helix with Gly is sufficient to disrupt the dimer into a monomer, leading to at least 1000fold reduction in activity
native and selenomethionine-labeled enzymes, hanging drop vapour diffusion method, mixing of 0.002 ml of the GGPP solution with 1012 mg/ml protein in 25 mM Tris-HCl, pH 7.5, 150 mM NaCl, and 0.1% Triton X-100 with 0.002 ml of the mother liquor containing 0.08 M CH3COONa, 0.145 M (NH4)2SO4, 13% polyethylene glycol 4000, 7-9% glycerol, and 7-9% 1,2-propanediol, and equilibrating with 0.5 ml of the mother liquor, 7 days room temperature, X-ray diffraction structure determination and analysis at 1.98 A resolution
-
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DELTA 1-17
complete loss of activity, monomer
DELTA1-6
72% of wild-type activity. Dimer formation
DELTA1-7
29% of wild-type activity. Dimer and monomer formation
Delta1-8
0.3% of wild-type activity. Monomer formation
DELTA1-9
0.2% of wild-type activity. Monomer formation
E7G
84% of wild-type activity. Dimer and monomer formation
E7G/L8G
0.6% of wild-type activity
F96C
site-directed mutagenesis, the mutant shows increased sclareol biosynthesis compared to the wild-type
F96S
site-directed mutagenesis, the mutant shows increased sclareol biosynthesis compared to the wild-type
H139A
site-directed mutagenesis, the dimeric mutant shows altered kinetics compared to the wild-type enzyme
H139A/R140A
site-directed mutagenesis, inactive monomeric mutant
I9G
2.5% of wild-type activity
L8G
20% of wild-type activity. Dimer formation
L8G/I9G
0.3% of wild-type activity. Monomer formation
M111A
site-directed mutagenesis, the dimeric mutant shows altered kinetics compared to the wild-type enzyme
M111E
site-directed mutagenesis, the dimeric/monomeric mutant shows altered kinetics compared to the wild-type enzyme
M111F
site-directed mutagenesis, the dimeric mutant shows altered kinetics compared to the wild-type enzyme
N101A
site-directed mutagenesis, the dimeric mutant shows altered kinetics compared to the wild-type enzyme
N101A/N104A
site-directed mutagenesis, the dimeric mutant shows reduced kcat compared to the wild-type
N101A/N104A/Y105A
site-directed mutagenesis, inactive dimeric mutant
N101A/Y105A
site-directed mutagenesis, the dimeric mutant shows reduced kcat compared to the wild-type
N104A
site-directed mutagenesis, the dimeric mutant shows altered kinetics compared to the wild-type enzyme
N104A/Y105A
site-directed mutagenesis, the dimeric mutant shows slightly reduced activity compared to the wild-type
R140A
site-directed mutagenesis, the dimeric mutant shows altered kinetics compared to the wild-type enzyme
Y105A
site-directed mutagenesis, the dimeric mutant shows altered kinetics compared to the wild-type enzyme
Y95A
site-directed mutagenesis, the mutant shows increased sclareol biosynthesis compared to the wild-type
Y95C/F96H
site-directed mutagenesis, the mutant shows increased sclareol biosynthesis compared to the wild-type
Y95L/F96I
site-directed mutagenesis, the mutant shows increased sclareol biosynthesis compared to the wild-type
Y95S/F96H
site-directed mutagenesis, the mutant shows increased sclareol biosynthesis compared to the wild-type
F108A
-
site-directed mutagenesis, mutant activity, substrate specificity, and product distribution compared to the wild-type enzyme
F108A/H139A
-
site-directed mutagenesis, mutant activity, substrate specificity, and product distribution compared to the wild-type enzyme
L135A/H139A
-
site-directed mutagenesis, mutant activity, substrate specificity, and product distribution compared to the wild-type enzyme
L138A
-
mutation upstream from the G(Q/E) motif. Mutant forms larger condensation products than wild-type. With farnesyl diphosphate as allylic substrate, mutant produces large amounts of a C25 product
R140A
-
no enzymic activity
S71Y
-
site-directed mutagenesis, mutant activity, substrate specificity, and product distribution compared to the wild-type enzyme
Y107A
-
site-directed mutagenesis, mutant activity, substrate specificity, and product distribution compared to the wild-type enzyme
Y107A/F108A
-
site-directed mutagenesis, mutant activity, substrate specificity, and product distribution compared to the wild-type enzyme
Y107A/F108A//L135A/H139A
-
site-directed mutagenesis, mutant activity, substrate specificity, and product distribution compared to the wild-type enzyme
Y107A/F108A/H139A
-
site-directed mutagenesis, mutant activity, substrate specificity, and product distribution compared to the wild-type enzyme
Y107A/H139A
-
site-directed mutagenesis, mutant activity, substrate specificity, and product distribution compared to the wild-type enzyme
H139A
-
site-directed mutagenesis, mutant activity, substrate specificity, and product distribution compared to the wild-type enzyme
H139A
-
mutation upstream from the G(Q/E) motif. Mutant forms larger condensation products than wild-type. With farnesyl diphosphate as allylic substrate, mutant produces large amounts of a C30 product
additional information
efficient diterpene production in yeast by engineering farnesyl diphosphate synthase Erg20p, EC 2.5.1.10, into a geranylgeranyl diphosphate synthase, overview. Several Erg20p mutants support sclareol yield significantly higher than the yield obtained by overexpression of Cistus creticus GGPPS. A single chromosomally integrated copy of the ERG20(F96C) mutant gene is significantly more efficient than overexpression of a heterologous fungal GGPP synthase in redirecting precursor fluxes towards the diterpene branch
additional information
-
efficient diterpene production in yeast by engineering farnesyl diphosphate synthase Erg20p, EC 2.5.1.10, into a geranylgeranyl diphosphate synthase, overview. Several Erg20p mutants support sclareol yield significantly higher than the yield obtained by overexpression of Cistus creticus GGPPS. A single chromosomally integrated copy of the ERG20(F96C) mutant gene is significantly more efficient than overexpression of a heterologous fungal GGPP synthase in redirecting precursor fluxes towards the diterpene branch
additional information
-
deletion of the first 9 or 17 amino acids caused the dissociation of dimer into monomer, the DELTA1-17 mutant shows abolished enzyme activity
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Chang, T.H.; Guo, R.T.; Ko, T.P.; Wang, A.H.; Liang, P.H.
Crystal structure of type-III geranylgeranyl pyrophosphate synthase from Saccharomyces cerevisiae and the mechanism of product chain length determination
J. Biol. Chem.
281
14991-15000
2006
Saccharomyces cerevisiae
brenda
Guo, R.T.; Cao, R.; Liang, P.H.; Ko, T.P.; Chang, T.H.; Hudock, M.P.; Jeng, W.Y.; Chen, C.K.; Zhang, Y.; Song, Y.; Kuo, C.J.; Yin, F.; Oldfield, E.; Wang, A.H.
Bisphosphonates target multiple sites in both cis- and trans-prenyltransferases
Proc. Natl. Acad. Sci. USA
104
10022-10027
2007
Saccharomyces cerevisiae (Q12051)
brenda
Cao, R.; Chen, C.K.; Guo, R.T.; Wang, A.H.; Oldfield, E.
Structures of a potent phenylalkyl bisphosphonate inhibitor bound to farnesyl and geranylgeranyl diphosphate synthases
Proteins
73
431-439
2008
Saccharomyces cerevisiae (Q12051), Saccharomyces cerevisiae
brenda
Lo, C.H.; Chang, Y.H.; Wright, J.D.; Chen, S.H.; Kan, D.; Lim, C.; Liang, P.H.
Combined experimental and theoretical study of long-range interactions modulating dimerization and activity of yeast geranylgeranyl diphosphate synthase
J. Am. Chem. Soc.
131
4051-4062
2009
Saccharomyces cerevisiae (Q12051), Saccharomyces cerevisiae
brenda
Noike, M.; Katagiri, T.; Nakayama, T.; Nishino, T.; Hemmi, H.
Effect of mutagenesis at the region upstream from the G(Q/E) motif of three types of geranylgeranyl diphosphate synthase on product chain-length
J. Biosci. Bioeng.
107
235-239
2009
Saccharomyces cerevisiae, Pantoea ananatis, Sulfolobus acidocaldarius
brenda
Chang, C.K.; Teng, K.H.; Lin, S.W.; Chang, T.H.; Liang, P.H.
Control activity of yeast geranylgeranyl diphosphate synthase from dimer interface through H-bonds and hydrophobic interaction
Biochemistry
52
2783-2792
2013
Saccharomyces cerevisiae (Q12051), Saccharomyces cerevisiae
brenda
Ignea, C.; Trikka, F.A.; Nikolaidis, A.K.; Georgantea, P.; Ioannou, E.; Loupassaki, S.; Kefalas, P.; Kanellis, A.K.; Roussis, V.; Makris, A.M.; Kampranis, S.C.
Efficient diterpene production in yeast by engineering Erg20p into a geranylgeranyl diphosphate synthase
Metab. Eng.
27
65-75
2015
Saccharomyces cerevisiae (Q12051), Saccharomyces cerevisiae
brenda
Ukibe, K.; Hashida, K.; Yoshida, N.; Takagi, H.
Metabolic engineering of Saccharomyces cerevisiae for astaxanthin production and oxidative stress tolerance
Appl. Environ. Microbiol.
75
7205-7211
2009
Saccharomyces cerevisiae, Saccharomyces cerevisiae INVSc1
brenda