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Information on EC 1.2.1.30 - carboxylate reductase (NADP+) and Organism(s) Nocardia iowensis and UniProt Accession Q6RKB1

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IUBMB Comments
The enzyme contains an adenylation domain, a phosphopantetheinyl binding domain, and a reductase domain, and requires activation by attachment of a phosphopantetheinyl group. The enzyme activates its substrate to an adenylate form, followed by a transfer to the phosphopantetheinyl binding domain. The resulting thioester is subsequently transferred to the reductase domain, where it is reduced to an aldehyde and released.
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This record set is specific for:
Nocardia iowensis
UNIPROT: Q6RKB1
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Word Map
The taxonomic range for the selected organisms is: Nocardia iowensis
The expected taxonomic range for this enzyme is: Eukaryota, Bacteria
Synonyms
carboxylate reductases, nicar, macar, nocar, nccar, mmcar, aryl-aldehyde oxidoreductase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
aromatic acid reductase
-
-
-
-
aryl-aldehyde dehydrogenase (NADP+)
-
-
-
-
aryl-aldehyde oxidoreductase
-
carboxylate reductase
-
Carboxylic acid reductase
niCAR
REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
an aromatic aldehyde + NADP+ + AMP + diphosphate = an aromatic acid + NADPH + H+ + ATP
show the reaction diagram
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
redox reaction
-
-
-
-
oxidation
-
-
-
-
reduction
-
-
-
-
SYSTEMATIC NAME
IUBMB Comments
aryl-aldehyde:NADP+ oxidoreductase (ATP-forming)
The enzyme contains an adenylation domain, a phosphopantetheinyl binding domain, and a reductase domain, and requires activation by attachment of a phosphopantetheinyl group. The enzyme activates its substrate to an adenylate form, followed by a transfer to the phosphopantetheinyl binding domain. The resulting thioester is subsequently transferred to the reductase domain, where it is reduced to an aldehyde and released.
CAS REGISTRY NUMBER
COMMENTARY hide
9074-94-6
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
(E)-3-phenylprop-2-enoate + NADPH + H+ + ATP
(E)-3-phenylprop-2-enal + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
3-hydroxypropionate + NADPH + H+ + ATP
3-hydroxypropanal + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
-
ir
3-methoxybenzoate + NADPH + H+ + ATP
3-methoxybenzaldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
3-nitrobenzoate + NADPH + H+ + ATP
3-nitrobenzaldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
3-oxo-3-phenylpropanoate + NADPH + H+ + ATP
3-oxo-3-phenylpropanal + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
3-phenylprop-2-ynoate + NADPH + H+ + ATP
3-phenylprop-2-ynal + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
3-phenylpropionate + NADPH + H+ + ATP
3-phenylpropionaldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
4-hydroxybutyrate + NADPH + H+ + ATP
4-hydroxybutanal + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
-
ir
4-methoxybenzoate + NADPH + H+ + ATP
4-methoxybenzaldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
4-methylbenzoate + NADPH + H+ + ATP
4-methylbenzaldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
5-hydroxypentanoate + NADPH + H+ + ATP
5-hydroxypentanal + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
-
ir
alpha-ketoglutaric acid + NADPH + ATP
? + NADP+ + AMP + phosphate
show the reaction diagram
-
-
-
?
aromatic acid + NADPH + H+ + ATP
aromatic aldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
aromatic carboxylate + NADPH + H+ + ATP
aromatic aldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
ir
benzoate + NADPH + ATP
benzaldehyde + NADP+ + AMP + phosphate
show the reaction diagram
-
-
-
-
?
benzoate + NADPH + H+ + ATP
benzaldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
benzoic acid + NADPH + H+ + ATP
benzaldehyde + benzyl alcohol + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
butanoate + NADPH + H+ + ATP
butyraldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
cis-aconitic acid + NADPH + ATP
? + NADP+ + AMP + phosphate
show the reaction diagram
-
-
-
?
citric acid + NADPH + ATP
? + NADP+ + AMP + phosphate
show the reaction diagram
-
-
-
?
D-malic acid + NADPH + ATP
? + NADP+ + AMP + phosphate
show the reaction diagram
-
-
-
?
DL-malic acid + NADPH + ATP
? + NADP+ + AMP + phosphate
show the reaction diagram
-
-
-
?
dodecanoate + NADPH + H+ + ATP
dodecanal + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
ferulic acid + NADPH + H+ + ATP
ferulic acid + coniferyl aldehyde + coniferyl alcohol + NADP+ + AMP + diphosphate
show the reaction diagram
not completely reduced
-
-
?
glutarate + NADPH + H+ + ATP
5-oxopentanoate + 1,5-pentanedial + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
-
ir
L-malic acid + NADPH + ATP
? + NADP+ + AMP + phosphate
show the reaction diagram
-
-
-
?
malonate + NADPH + H+ + ATP
3-oxopropanoate + 1,3-propanedial + NADP+ + AMP + diphosphate
show the reaction diagram
-
low activity
-
-
ir
octadecanoate + NADPH + H+ + ATP
octadecanal + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
octanoate + NADPH + H+ + ATP
octanal + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
succinate + NADPH + H+ + ATP
4-oxobutanoate + 1,4-butanedial + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
-
ir
thiophene-2-carboxylate + NADPH + H+ + ATP
thiophene-2-carbaldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
trans-2-phenylcyclopropane-1-carboxylate + NADPH + H+ + ATP
trans-2-phenylcyclopropane-1-carbaldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
trans-aconitic acid + NADPH + ATP
? + NADP+ + AMP + phosphate
show the reaction diagram
-
-
-
?
vanillate + NADPH + H+ + ATP
vanillin + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
-
ir
vanillic acid + NADPH + H+ + ATP
vanillin + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
?
vanillic acid + NADPH + H+ + ATP
vanillin + vanillyl alcohol + NADP+ + AMP + diphosphate
show the reaction diagram
-
with Escherichia coli BL21-CodonPlus(DE3)-RP/pPV2.83, in which recombinant Npt is expressed along with recombinant car, vanillic acid is reduced to vanillin and vanillyl alcohol, with vanillin (80%) as the major product. Escherichia coli BL21-CodonPlus(DE3)-RP/pHAT305 (expressing only recombinant Car) reduce only 50% of the vanillic acid starting material, with vanillyl alcohol being the major metabolite. With Escherichia coli BL21-CodonPlus(DE3)-RP/pPV2.83, in which recombinant car is presumed to be in the fully active, phosphopantetheinylated holo form, the rate of reduction of vanillic acid is much faster than that of vanillin to vanillyl alcohol by endogenous Escherichia coli aldehyde dehydrogenase
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
aromatic carboxylate + NADPH + H+ + ATP
aromatic aldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
ir
benzoate + NADPH + H+ + ATP
benzaldehyde + NADP+ + AMP + diphosphate
show the reaction diagram
vanillate + NADPH + H+ + ATP
vanillin + NADP+ + AMP + diphosphate
show the reaction diagram
-
-
-
-
ir
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
NADPH
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
AMP
product inhibition
diphosphate
product inhibition
NADP+
product inhibition
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
phosphopantetheine transferase
-
required for activating the enzyme. Recombinant car is an apoenzyme that requires phosphopantetheinylation for conversion to a fully active holoenzyme
-
additional information
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.05
(E)-3-phenylprop-2-enoate
pH 7.5, 30°C
-
0.68
3-Methoxybenzoate
pH 7.5, 30°C
5.6
3-Nitrobenzoate
pH 7.5, 30°C
0.39
3-oxo-3-phenylpropanoate
pH 7.5, 30°C
1.3
3-phenylprop-2-ynoate
pH 7.5, 30°C
-
0.97
3-Phenylpropionate
pH 7.5, 30°C
0.25
4-Methoxybenzoate
pH 7.5, 30°C
1
4-Methylbenzoate
pH 7.5, 30°C
0.9
benzoate
pH 7.5, 30°C
32
Butanoate
pH 7.5, 30°C
0.02
dodecanoate
pH 7.5, 30°C
0.7
octadecanoate
pH 7.5, 30°C
0.2
Octanoate
pH 7.5, 30°C
1
Thiophene-2-carboxylate
pH 7.5, 30°C
0.21
trans-2-phenylcyclopropane-1-carboxylate
pH 7.5, 30°C
-
additional information
additional information
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.128
(E)-3-phenylprop-2-enoate
pH 7.5, 30°C
-
1.55
3-Methoxybenzoate
pH 7.5, 30°C
0.3
3-Nitrobenzoate
pH 7.5, 30°C
0.618
3-oxo-3-phenylpropanoate
pH 7.5, 30°C
0.117
3-phenylprop-2-ynoate
pH 7.5, 30°C
-
1.43
3-Phenylpropionate
pH 7.5, 30°C
0.82
4-Methoxybenzoate
pH 7.5, 30°C
1.57
4-Methylbenzoate
pH 7.5, 30°C
1.63
benzoate
pH 7.5, 30°C
4.33
Butanoate
pH 7.5, 30°C
2.62
dodecanoate
pH 7.5, 30°C
1.13
octadecanoate
pH 7.5, 30°C
3.88
Octanoate
pH 7.5, 30°C
1.01
Thiophene-2-carboxylate
pH 7.5, 30°C
0.18
trans-2-phenylcyclopropane-1-carboxylate
pH 7.5, 30°C
-
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
2.56
(E)-3-phenylprop-2-enoate
pH 7.5, 30°C
-
2.28
3-Methoxybenzoate
pH 7.5, 30°C
0.054
3-Nitrobenzoate
pH 7.5, 30°C
1.59
3-oxo-3-phenylpropanoate
pH 7.5, 30°C
0.09
3-phenylprop-2-ynoate
pH 7.5, 30°C
-
1.47
3-Phenylpropionate
pH 7.5, 30°C
3.28
4-Methoxybenzoate
pH 7.5, 30°C
1.57
4-Methylbenzoate
pH 7.5, 30°C
1.81
benzoate
pH 7.5, 30°C
0.135
Butanoate
pH 7.5, 30°C
131
dodecanoate
pH 7.5, 30°C
1.61
octadecanoate
pH 7.5, 30°C
19.4
Octanoate
pH 7.5, 30°C
1.01
Thiophene-2-carboxylate
pH 7.5, 30°C
0.86
trans-2-phenylcyclopropane-1-carboxylate
pH 7.5, 30°C
-
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.3
-
recombinant car incubated with CoA
0.36
recombinant Car expressed in Escherichia coli BL21-CodonPlus(DE3)-RP cells cultured in LB medium with ampicillin, at 16 h
0.5
-
Nocardia cell free extract incubated with recombinant car
1.5
-
recombinant car incubated with CoA and Escherichia coli MV1190/pUC8-sfp cell free extract
1.6
-
Nocardia cell free extract incubated with recombinant car and CoA. Recombinant car incubated with CoA and Npt
2.1
-
car purified from BL21-CodonPlus(DE3)-RP/pPV1.184 (car and sfp)
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
evolution
malfunction
lack of posttranslational phosphopantetheinylation of a serine group in the recombinant CAR reduces the activity of recombinantly expressed enzyme
physiological function
additional information
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
CAR_NOCIO
1174
0
128346
Swiss-Prot
-
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
POSTTRANSLATIONAL MODIFICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
phosphopantetheinylation
posttranslational phosphopantetheinylation of a serine group in the recombinant CAR that is necessary for activity
side-chain modification
The phosphopantetheinyl-binding domain is recognized by a phosphopantetheinyl transferase enzyme, which attaches a phosphopantetheinyl residue to a conserved serine. Only upon this post-translational modification, the enzymes become active and are able to engage in the catalytic cycle
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
S689A
-
completely inactive
S691A
-
has 39% of the activity of recombinant car
S694A
-
has 50% of the activity of recombinant car
S696A
-
has 76% of the activity of recombinant car
additional information
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
30
half-life is 42.9 h
additional information
enzyme half-lives at different conditions, overview
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
by gel filtration
-
recombinant His-tagged enzyme from Escherichia coli by nickel affinity chromatography and desalting gel filtration
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
DNA and amino acid sequence determination and analysis, phylogenetic analysis
DNA and amino acid sequence determination and analysis, recombinant expression in Escherichia coli resulting in decreased activity due to a lack of post-translational phosphopantetheinylation of a serine group in the recombinant CAR that is necessary for activity. Coexpression with the recombinant phosphopantetheinyl transferase (PPTase) from Bacillus subtilis (Sfp) or cell-free extracts from Nocardia iowensis containing native PPTase converted niCAR to its holoenzyme state, increases the enzyme activity 20fold. Recombinant enzyme expression in Saccharomyces cerevisiae and Saccharomyces pombe and an engineered aldehyde-accumulating Escherichia coli strain for de novo production of vanillin from glucose
plasmids pHAT305(Placcar), pPV2.83(Placcar Placnpt), pPV2.84(Placcar Placgdh) or pPV2.85(Placcar Plac npt gdh) expressed in Escherichia coli BL21-CodonPlus(DE3)-RP cells
recombinant car expressed in Escherichia coli BL21-CodonPlus(DE3)-RP/pHAT305 and in Escherichia coli BL21-CodonPlus(DE3)-RP/pPV1.184 cells
-
sequence comparisons and phylogenetic analysis, recombinant coexpression of His-tagged enzyme in Escherichia coli
APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
industry
vanillic acid reduction in Escherichia coli BL21-CodonPlus(DE3)-RP/pPV2.85 cells containing car, npt and gdh is complete in 6 h, and is faster than in cells containing only car and/or npt. The availability of Escherichia coli BL21-CodonPlus(DE3)-RP/pPV2.85 expressing holo-Car and Gdh provides a means of generating a range of value-added aldehydes or alcohols of importance in pharmaceutical, food and agricultural industries. Uses of directed evolution and related mutant generating processes, may enable a Car-system with broader substrate specificities and one that is capable of achieving much higher product yields
synthesis
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Venkitasubramanian, P.; Daniels, L.; Das, S.; Lamm, A.S.; Rosazza, J.P.
Aldehyde oxidoreductase as a biocatalyst: Reductions of vanillic acid
Enzyme Microb. Technol.
42
130-137
2008
Nocardia iowensis (Q6RKB1)
Manually annotated by BRENDA team
Venkitasubramanian, P.; Daniels, L.; Rosazza, J.P.
Reduction of carboxylic acids by Nocardia aldehyde oxidoreductase requires a phosphopantetheinylated enzyme
J. Biol. Chem.
282
478-485
2007
Nocardia iowensis
Manually annotated by BRENDA team
Finnigan, W.; Thomas, A.; Cromar, H.; Gough, B.; Snajdrova, R.; Adams, J.P.; Littlechild, J.A.; Harmer, N.J.
Characterization of carboxylic acid reductases as enzymes in the toolbox for synthetic chemistry
ChemCatChem
9
1005-1017
2017
Mycobacterium marinum (B2HN69), Mycobacterium marinum ATCC BAA-535 (B2HN69), Mycolicibacterium phlei, Mycolicibacterium smegmatis, Neurospora crassa, Nocardia asteroides, Nocardia asteroides JCM 3016, Nocardia brasiliensis, Nocardia iowensis (Q6RKB1), Nocardia otitidiscaviarum, Syncephalastrum racemosum, Trametes versicolor, Tsukamurella paurometabola
Manually annotated by BRENDA team
Stolterfoht, H.; Schwendenwein, D.; Sensen, C.W.; Rudroff, F.; Winkler, M.
Four distinct types of E.C. 1.2.1.30 enzymes can catalyze the reduction of carboxylic acids to aldehydes
J. Biotechnol.
257
222-232
2017
Aspergillus terreus (Q0CRQ4), Aspergillus terreus FGSC A1156 (Q0CRQ4), Aspergillus terreus NIH 2624 (Q0CRQ4), Mycobacterium marinum (B2HN69), Mycobacterium marinum ATCC BAA-535 (B2HN69), Neurospora crassa, Nocardia iowensis (Q6RKB1), Segniliparus rotundus (D6Z860), Segniliparus rotundus ATCC BAA-972 (D6Z860), Segniliparus rotundus CDC 1076 (D6Z860), Segniliparus rotundus CIP 108378 (D6Z860), Segniliparus rotundus DSM 44985 (D6Z860), Segniliparus rotundus JCM 13578 (D6Z860)
Manually annotated by BRENDA team
Kramer, L.; Le, X.; Hankore, E.D.; Wilson, M.A.; Guo, J.; Niu, W.
Engineering and characterization of hybrid carboxylic acid reductases
J. Biotechnol.
304
52-56
2019
Kutzneria albida, Mycobacterium avium, Mycobacterium marinum (B2HN69), Mycobacterium marinum ATCC BAA-535 (B2HN69), Neurospora crassa, Nocardia iowensis
Manually annotated by BRENDA team
Butler, N.; Kunjapur, A.M.
Carboxylic acid reductases in etabolic engineering
J. Biotechnol.
307
1-14
2020
Aspergillus niger, Moorella thermoacetica, Mycobacterium marinum (B2HN69), Mycobacterium marinum ATCC BAA-535 (B2HN69), Mycobacteroides abscessus, Neurospora crassa, Nocardia asteroides, Nocardia iowensis (Q6RKB1), Trametes versicolor
Manually annotated by BRENDA team