Reference on EC 6.3.1.19 - prokaryotic ubiquitin-like protein ligase
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REF. 
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Forer, N.; Korman, M.; Elharar, Y.; Vishkautzan, M.; Gur, E.
Bacterial proteasome and PafA, the pup ligase, interact to form a modular protein tagging and degradation machine
Biochemistry
52
9029-9035
2013
Mycobacterium tuberculosis, Mycobacterium tuberculosis ATCC 25618
Striebel, F.; Imkamp, F.; zcelik, D.; Weber-Ban, E.
Pupylation as a signal for proteasomal degradation in bacteria
Biochim. Biophys. Acta
1843
103-113
2014
Mycobacterium tuberculosis (P9WNU7), Mycobacterium tuberculosis ATCC 25618 (P9WNU7)
Cerda-Maira, F.A.; McAllister, F.; Bode, N.J.; Burns, K.E., Gygi, S.P.; Darwin, K.H.
Reconstitution of the Mycobacterium tuberculosis pupylation pathway in Escherichia coli
EMBO Rep.
12
863-870
2011
Mycobacterium tuberculosis (P9WNU7), Mycobacterium tuberculosis, Mycobacterium tuberculosis ATCC 25618 (P9WNU7)
Sutter, M.; Damberger, F.F.; Imkamp, F.; Allain, F.H.; Weber-Ban, E.
Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate
J. Am. Chem. Soc.
132
5610-5612
2010
Mycobacterium tuberculosis (P9WNU7), Mycobacterium tuberculosis ATCC 25618 (P9WNU7)
Smirnov, D.; Dhall, A.; Sivanesam, K.; Sharar, R.J.; Chatterjee, C.
Fluorescent probes reveal a minimal ligase recognition motif in the prokaryotic ubiquitin-like protein from Mycobacterium tuberculosis
J. Am. Chem. Soc.
135
2887-2890
2013
Mycobacterium tuberculosis (P9WNU7), Mycobacterium tuberculosis, Mycobacterium tuberculosis ATCC 25618 (P9WNU7)
Barandun, J.; Delley, C.L.; Ban, N.; Weber-Ban, E.
Crystal structure of the complex between prokaryotic ubiquitin-like protein and its ligase PafA
J. Am. Chem. Soc.
135
:6794-6797
2013
Corynebacterium glutamicum (Q8NQE0), Corynebacterium glutamicum DSM 20300 (Q8NQE0)
Guth, E.; Thommen, M.; Weber-Ban, E.
Mycobacterial ubiquitin-like protein ligase PafA follows a two-step reaction pathway with a phosphorylated pup intermediate
J. Biol. Chem.
286
4412-4419
2011
Mycobacterium tuberculosis (P9WNU7), Mycobacterium tuberculosis, Mycobacterium tuberculosis ATCC 25618 (P9WNU7)
Delley, C.L.; Striebel, F.; Heydenreich, F.M.; zcelik, D.; Weber-Ban, E.
Activity of the mycobacterial proteasomal ATPase Mpa is reversibly regulated by pupylation
J. Biol. Chem.
287
7907-7914
2012
Mycobacterium tuberculosis (P9WNU7), Mycobacterium tuberculosis, Mycobacterium tuberculosis ATCC 25618 (P9WNU7)
Ofer, N.; Forer, N.; Korman, M.; Vishkautzan, M.; Khalaila, I.; Gur, E.
Allosteric transitions direct protein tagging by PafA, the prokaryotic ubiquitin-like protein (Pup) ligase
J. Biol. Chem.
288
11287-11293
2013
Mycobacterium tuberculosis (P9WNU7), Mycobacterium tuberculosis, Mycobacterium tuberculosis ATCC 25618 (P9WNU7)
zcelik, D.; Barandun, J.; Schmitz, N.; Sutter, M.; Guth, E.; Damberger, F.F.; Allain, F.H.; Ban, N.; Weber-Ban, E.
Structures of Pup ligase PafA and depupylase Dop from the prokaryotic ubiquitin-like modification pathway
Nat. Commun.
3
1014
2012
Corynebacterium glutamicum (Q8NQE1), Corynebacterium glutamicum DSM 20300 (Q8NQE1)
Striebel, F.; Imkamp, F.; Sutter, M.; Steiner, M.; Mamedov, A.; Weber-Ban, E.
Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes
Nat. Struct. Mol. Biol.
16
647-651
2009
Mycobacterium tuberculosis (P9WNU7), Mycobacterium tuberculosis, Mycobacterium tuberculosis ATCC 25618 (P9WNU7)
Barandun, J.; Damberger, F.F.; Delley, C.L.; Laederach, J.; Allain, F.H.; Weber-Ban, E.
Prokaryotic ubiquitin-like protein remains intrinsically disordered when covalently attached to proteasomal target proteins
BMC Struct. Biol.
17
doi: 10.1186/s12900-017-0072-1
2017
Mycobacterium tuberculosis (P9WNU7), Mycobacterium tuberculosis, Mycobacterium tuberculosis ATCC 25618 / H37Rv (P9WNU7)
Regev, O.; Roth, Z.; Korman, M.; Khalaila, I.; Gur, E.
A kinetic model for the prevalence of mono- over poly-pupylation
FEBS J.
282
4176-4186
2015
Mycolicibacterium smegmatis (A0QZ42), Mycolicibacterium smegmatis ATCC 700084 / mc2155 (A0QZ42)
Regev, O.; Korman, M.; Hecht, N.; Roth, Z.; Forer, N.; Zarivach, R.; Gur, E.
An extended loop of the Pup ligase, PafA, mediates interaction with protein targets
J. Mol. Biol.
428
4143-4153
2016
Corynebacterium glutamicum (Q8NQE1), Corynebacterium glutamicum ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025 (Q8NQE1)
Delley, C.L.; Mueller, A.U.; Ziemski, M.; Weber-Ban, E.
Prokaryotic ubiquitin-like protein and its ligase/deligase enzymes
J. Mol. Biol.
429
3486-3499
2017
Acidothermus cellulolyticus (A0LU53), Mycolicibacterium smegmatis (A0QZ42), Bifidobacterium adolescentis (A1A0U7), Paenarthrobacter aurescens (A1R6Q9), Salinispora tropica (A4X747), Renibacterium salmoninarum (A9WSH9), Kocuria rhizophila (B2GIN9), Rhodococcus erythropolis (C0ZZU4), Micrococcus luteus (C5CBV0), Mycobacterium tuberculosis (P9WNU7), Thermobifida fusca (Q47NZ6), Corynebacterium glutamicum (Q8NQE1), Streptomyces coelicolor (Q9RJ61), Bifidobacterium adolescentis ATCC 15703 / DSM 20083 / NCTC 11814 / E194a (A1A0U7), Acidothermus cellulolyticus ATCC 43068 / 11B (A0LU53), Mycobacterium tuberculosis ATCC 25618 / H37Rv (P9WNU7), Renibacterium salmoninarum ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235 (A9WSH9), Streptomyces coelicolor ATCC BAA-471 / A3(2) / M145 (Q9RJ61), Corynebacterium glutamicum ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025 (Q8NQE1), Kocuria rhizophila ATCC 9341 / DSM 348 / NBRC 103217 / DC2201 (B2GIN9), Salinispora tropica ATCC BAA-916 / DSM 44818 / CNB-440 (A4X747), Paenarthrobacter aurescens TC1 (A1R6Q9), Mycolicibacterium smegmatis ATCC 700084 / mc2155 (A0QZ42), Rhodococcus erythropolis PR4 / NBRC 100887 (C0ZZU4), Micrococcus luteus ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230 (C5CBV0)
Zhang, S.; Burns-Huang, K.; Janssen, G.; Li, H.; Ovaa, H.; Hedstrom, L.; Darwin, K.
Mycobacterium tuberculosis proteasome accessory factor A (PafA) can transfer prokaryotic ubiquitin-like protein (Pup) between substrates
mBio
8
e00122-17
2017
Mycobacterium tuberculosis (P9WNU7), Mycobacterium tuberculosis, Mycobacterium tuberculosis ATCC 25618 / H37Rv (P9WNU7)
Chen, X.; Li, C.; Wang, L.; Liu, Y.; Li, C.; Zhang, J.
The mechanism of Mycobacterium smegmatis PafA self-pupylation
PLoS ONE
11
e0151021
2016
Mycolicibacterium smegmatis (A0QZ42), Mycolicibacterium smegmatis ATCC 700084 / mc2155 (A0QZ42)
Elharar, Y.; Roth, Z.; Hecht, N.; Rotkopf, R.; Khalaila, I.; Gur, E.
Posttranslational regulation of coordinated enzyme activities in the Pup-proteasome system
Proc. Natl. Acad. Sci. USA
113
E1605-E1614
2016
Mycolicibacterium smegmatis (A0QZ42), Mycolicibacterium smegmatis ATCC 700084 / mc2155 (A0QZ42)
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