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Information on EC 2.7.11.4 - [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase and Organism(s) Rattus norvegicus and UniProt Accession Q00972

for references in articles please use BRENDA:EC2.7.11.4
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IUBMB Comments
The enzyme has no activating compound but is specific for its substrate. It is a mitochondrial enzyme associated with the branched-chain 2-oxoacid dehydrogenase complex. Phosphorylation inactivates EC 1.2.4.4, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring).
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Rattus norvegicus
UNIPROT: Q00972
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Word Map
The taxonomic range for the selected organisms is: Rattus norvegicus
The enzyme appears in selected viruses and cellular organisms
Synonyms
bckdk, bckdh kinase, branched-chain alpha-ketoacid dehydrogenase kinase, bckd kinase, branched-chain alpha-keto acid dehydrogenase kinase, bckd-kinase, branched-chain 2-oxo acid dehydrogenase kinase, bcka dehydrogenase kinase, branched chain alpha-ketoacid dehydrogenase kinase, bckdc kinase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
branched chain keto acid dehydrogenase kinase
-
branched-chain alpha-keto acid dehydrogenase kinase
-
branched-chain alpha-keto dehydrogenase kinase
-
branched-chain alpha-ketoacid dehydrogenase kinase
-
BCK
-
-
-
-
BCKD kinase
-
-
BCKDH kinase
branched-chain 2-oxo acid dehydrogenase kinase
-
-
-
-
branched-chain alpha-keto acid decarboxylase/dehydrogenase kinase
-
-
branched-chain alpha-keto acid dehydrogenase
-
-
branched-chain alpha-keto acid dehydrogenase kinase
branched-chain alpha-ketoacid dehydrogenase kinase
branched-chain keto acid dehydrogenase kinase
-
-
-
-
kinase, branched-chain oxo acid dehydrogenase (phosphorylating)
-
-
-
-
additional information
-
kinase activity is an intrinsic activity of branched-chain oxo acid dehydrogenase complex
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
phospho group transfer
-
-
-
-
SYSTEMATIC NAME
IUBMB Comments
ATP:[3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] phosphotransferase
The enzyme has no activating compound but is specific for its substrate. It is a mitochondrial enzyme associated with the branched-chain 2-oxoacid dehydrogenase complex. Phosphorylation inactivates EC 1.2.4.4, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring).
CAS REGISTRY NUMBER
COMMENTARY hide
82391-38-6
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
ATP + [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)]
ADP + [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] phosphate
show the reaction diagram
ATP + [branched-chain keto-acid dehydrogenase (acetyl-transferring)]
ADP + [branched-chain keto-acid dehydrogenase (acetyl-transferring)] phosphate
show the reaction diagram
the enzyme phosphorylates Ser293 of the E1alpha subunit of branched-chain keto-acid dehydrogenase
-
-
?
ATP + branched-chain alpha-keto acid decarboxylase/dehydrogenase
ADP + phosphorylated branched-chain alpha-keto acid decarboxylase/dehydrogenase
show the reaction diagram
ATP + histone II-S
?
show the reaction diagram
-
-
-
-
?
ATP + [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)]
ADP + [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] phosphate
show the reaction diagram
-
inactivation by phosphorylation of BCKDH
-
-
?
ATP + [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)]
ADP + [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)] phosphate
show the reaction diagram
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
ATP + [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)]
ADP + [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] phosphate
show the reaction diagram
ATP + [branched-chain keto-acid dehydrogenase (acetyl-transferring)]
ADP + [branched-chain keto-acid dehydrogenase (acetyl-transferring)] phosphate
show the reaction diagram
the enzyme phosphorylates Ser293 of the E1alpha subunit of branched-chain keto-acid dehydrogenase
-
-
?
ATP + branched-chain alpha-keto acid decarboxylase/dehydrogenase
ADP + phosphorylated branched-chain alpha-keto acid decarboxylase/dehydrogenase
show the reaction diagram
ATP + [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)]
ADP + [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] phosphate
show the reaction diagram
-
inactivation by phosphorylation of BCKDH
-
-
?
ATP + [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)]
ADP + [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)] phosphate
show the reaction diagram
additional information
?
-
-
The branched-chain alpha-keto acid dehydrogenase complex is the most important regulatory enzyme in branched-chain amino acid catabolism, regulation of hepatic BCKDH complex activity in spontaneous type 2 diabetes Otsuka Long-Evans Tokushima Fatty rats and Zucker diabetic fatty rats, both showing reduced enzyme activity, overview
-
-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Rb+
-
activation
additional information
-
no activation by Li+, Na+
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
ADP
product inhibition
octanoic acid
-
thiamine diphosphate
Ca2+-dependent inhibition
2-(N-Morpholino)propane sulfonate buffer
-
-
2-Chloroisohexanoate
2-oxo-3-methylpentanoate
2-oxohexanedioate
-
-
2-oxoisocaproate
2-oxoisopentanoate
acetoacetyl-CoA
-
-
alpha-Chloroisocaproate
alpha-Ketoisocaproate
-
inhibits the enzyme by releasing it from the BCKD complex via dissociation
alpha-ketoisovalerate
-
inhibits the enzyme by releasing it from the BCKD complex via dissociation
branched-chain 2-oxo acids
-
-
Dichloroacetate
methylmalonyl-CoA
-
-
n-Octanoate
-
-
thiamine diphosphate
additional information
-
ACTIVATING COMPOUND
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
additional information
-
dietary supplementation of branched-chain amino acid over several weeks increases the enzyme activity in spontaneous type II diabetic rats, overview
-
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.004
ATP
-
-
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0542 - 0.475
phosphate
Ki VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.5
2-Chloroisohexanoate
-
37°C
0.0032 - 0.0164
thiamine diphosphate
IC50 VALUE [mM]
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0025
thiamine diphosphate
Rattus norvegicus
pH 7.4, 30°C, in the presence of 0.001 mM Ca2+
0.006 - 0.031
alpha-Chloroisocaproate
0.0046 - 0.008
thiamine diphosphate
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.0247
-
without added salt
0.0268
-
liver enzyme
0.0357
-
heart enzyme
0.0357 - 0.09
-
heart enzyme, depending on purification method
0.05
-
recombinant enzyme
additional information
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
22
-
assay at room temperature
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
8.5
-
native PAGE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
physiological function
the enzyme (Bckdk) is an integral part of an enzyme complex located in the mitochondrial matrix of many tissues which regulates the levels of the branched-chain amino acids (BCAAs), leucine, isoleucine and valine
malfunction
-
the BDK activity is decreased in the livers of streptozotocin-induced diabetic rats
metabolism
-
the enzyme is involved in the regulation of the branched-chain alpha-keto acid dehydrogenase complex by inactivating it through phopshorylation, complex regulation and effects of the drug benzofibrate, overview
physiological function
-
branched-chain alpha-keto acid dehydrogenase kinase is responsible for the regulation of branched-chain alpha-keto acid dehydrogenase complex, which is the rate-limiting enzyme in the catabolism of branched-chain amino acids
additional information
-
activity of BDK practically corresponds with plasma insulin concentrations
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
BCKD_RAT
412
0
46474
Swiss-Prot
Mitochondrion (Reliability: 2)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
43280
-
calculated from amino acid sequence
44000
-
x * 44000, SDS-PAGE
44000 - 45000
-
SDS-PAGE
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
dimer
dimerizes through direct interaction of two opposing nucleotide-binding domains, crystallographic data
?
-
x * 44000, SDS-PAGE
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
vapor diffusion method
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
circulating levels of the branched-chain amino acids (BCAAs) are reduced by 70-80% in animals homozygous for the mutation causing a phenotype named frogleg. The mutationis located within the kinase domain of Bckdk. The frogleg phenotype shares important characteristics with a previously described Bckdk knockout mouse and with human subjects with Bckdk mutations. The mutation affects both the central and peripheral nervous systems
GENERAL STABILITY
ORGANISM
UNIPROT
LITERATURE
precipitation of branched-chain oxo acid dehydrogenase enzyme complex at acid pH-values, especially below 6.5, results in specific loss of kinase activity
-
STORAGE STABILITY
ORGANISM
UNIPROT
LITERATURE
labile enzyme, best stored at -70°C in the presence of DTT
-
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
alpha-ketoacid dehydrogenase complex
-
from liver and heart, homogeneity
-
from purified branched-chain alpha-keto acid dehydrogenase complex
-
liver enzyme, heart enzyme and recombinant enzyme expressed in Escherichia coli
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
fusion protein with maltose-binding protein
BDK quantitative real-time PCR expression analysis
-
BDK semi-quantitative real-time PCR expression analysis
-
cloned and expressed in Escherichia coli
-
fragments of the enzyme cloned into firefly luciferase plasmid
-
fusion protein with maltose-binding protein
-
EXPRESSION
ORGANISM
UNIPROT
LITERATURE
enzyme expression is reduced by 5% by bezafibrate
-
insulin is known to increase the enzyme expression in cultured rat hepatocytes
-
RENATURED/Commentary
ORGANISM
UNIPROT
LITERATURE
reconstitution with lipoylated recombinant E2
-
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Reed, L.J.; Damuni, Z.; Merryfield, M.L.
Regulation of mammalian pyruvate and branched-chain alpha-keto acid dehydrogenase complexes by phosphorylation-dephosphorylation
Curr. Top. Cell. Regul.
27
41-49
1985
Bos taurus, Oryctolagus cuniculus, Rattus norvegicus
Manually annotated by BRENDA team
Harris, R.A.; Kuntz, M.J.; Simpson, R.
Inhibition of branched-chain alpha-keto acid dehydrogenase kinase by alpha-chloroisocaproate
Methods Enzymol.
166
114-123
1988
Oryctolagus cuniculus, Rattus norvegicus
Manually annotated by BRENDA team
Paxton, R.
Branched-chain alpha-keto acid dehydrogenase and its kinase from rabbit liver and heart
Methods Enzymol.
166
313-320
1988
Bos taurus, Oryctolagus cuniculus, Rattus norvegicus
Manually annotated by BRENDA team
Hawes, J.W.; Schnepf, R.J.; Jenkins, A.E.; Shimomura, Y.; Popov, K.M.; Harris, R.A.
Roles of amino acid residues surrounding phosphorylation site 1 and branched-chain alpha-ketoacid dehydrogenase (BCKDH) in catalysis and phosphorylation site recognition by BCKDH kinase
J. Biol. Chem.
270
31071-31076
1995
Rattus norvegicus
Manually annotated by BRENDA team
Odessey, R.
Purification of rat kidney branched-chain oxo acid dehydrogenase complex with endogenous kinase activity
Biochem. J.
204
353-356
1982
Rattus norvegicus
Manually annotated by BRENDA team
Paxton, R.; Harris, R.A.
Clofibric acid, phenylpyruvate, and dichloroacetate inhibition of branched-chain alpha-ketoacid dehydrogenase kinase in vitro and in perfused rat heart
Arch. Biochem. Biophys.
231
58-66
1984
Oryctolagus cuniculus, Rattus norvegicus
Manually annotated by BRENDA team
Shimomura, Y.; Kuntz, M.J.; Suzuki, M.; Ozawa, T.; Harris, R.A.
Monovalent cations and inorganic phosphate alter branched-chain alpha-ketoacid dehydrogenase-kinase activity and inhibitor sensitivity
Arch. Biochem. Biophys.
266
210-218
1988
Rattus norvegicus
Manually annotated by BRENDA team
Espinal, J.; Beggs, M.; Randle, P.J.
Assay of branched-chain alpha-keto acid dehydrogenase kinase in mitochondrial extracts and purified branched-chain alpha-keto acid dehydrogenase complexes
Methods Enzymol.
166
166-175
1988
Bos taurus, Oryctolagus cuniculus, Rattus norvegicus
Manually annotated by BRENDA team
Shimomura, Y.; Nanaumi, N.; Suzuki, M.; Popov, K.M.; Harris, R.A.
Purification and partial characterization of branched-chain alpha-ketoacid dehydrogenase kinase from rat liver and rat heart
Arch. Biochem. Biophys.
283
293-299
1990
Rattus norvegicus, Rattus norvegicus Sprague-Dawley
Manually annotated by BRENDA team
Popov, K.M.; Zhao, Y.; Shimomura, Y.; Kuntz, M.J.; Harris, R.A.
Branched-chain alpha-ketoacid dehydrogenase kinase. Molecular cloning, expression, and sequence similarity with histidine protein kinases
J. Biol. Chem.
267
13127-13130
1992
Rattus norvegicus
Manually annotated by BRENDA team
Davie, J.R.; Wynn, R.M.; Meng, M.; Huang, Y.S.; Aalund, G.; Chuang, D.T.; Lau, K.S.
Expression and characterization of branched-chain alpha-ketoacid dehydrogenase kinase from the rat. Is it a histidine-protein kinase?
J. Biol. Chem.
270
19861-19867
1995
Rattus norvegicus
Manually annotated by BRENDA team
Fujii, H.; Shimomura, Y.; Murakami, T.; Nakai, N.; Sato, T.; Suzuki, M.; Harris, R.A.
Branched-chain alpha-keto acid dehydrogenase kinase content in rat skeletal muscle is decreased by endurance training
Biochem. Mol. Biol. Int.
44
1211-1216
1998
Rattus norvegicus, Rattus norvegicus Sprague-Dawley
Manually annotated by BRENDA team
Machius, M.; Chuang, J.L.; Wynn, R.M.; Tomchick, D.R.; Chuang, D.T.
Structure of rat BCKD kinase: nucleotide-induced domain communication in a mitochondrial protein kinase
Proc. Natl. Acad. Sci. USA
98
11218-11223
2001
Rattus norvegicus (Q00972)
Manually annotated by BRENDA team
Nakai, N.; Kobayashi, R.; Popov, K.M.; Harris, R.A.; Shimomura, Y.
Determination of branched-chain alpha-keto acid dehydrogenase activity state and branched-chain alpha-keto acid dehydrogenase kinase activity and protein in mammalian tissues
Methods Enzymol.
324
48-62
2000
Rattus norvegicus
Manually annotated by BRENDA team
Nellis, M.M.; Doering, C.B.; Kasinski, A.; Danner, D.J.
Insulin increases branched-chain alpha-ketoacid dehydrogenase kinase expression in Clone 9 rat cells
Am. J. Physiol.
283
E853-E860
2002
Rattus norvegicus
Manually annotated by BRENDA team
Obayashi, M.; Sato, Y.; Harris, R.A.; Shimomura, Y.
Regulation of the activity of branched-chain 2-oxo acid dehydrogenase (BCODH) complex by binding BCODH kinase
FEBS Lett.
491
50-54
2001
Rattus norvegicus
Manually annotated by BRENDA team
Popov, K.M.; Shimomura, Y.; Hawes, J.W.; Harris, R.A.
Branched-chain alpha-keto acid dehydrogenase kinase
Methods Enzymol.
324
162-178
2000
Rattus norvegicus
Manually annotated by BRENDA team
Popov, K.M.; Zhao, Y.; Shimomura, Y.; Jaskiewicz, J.; Kedishvili, N.Y.; Irwin, J.; Goodwin, G.W.; Harris, R.A.
Dietary control and tissue specific expression of branched-chain alpha-ketoacid dehydrogenase kinase
Arch. Biochem. Biophys.
316
148-154
1995
Rattus norvegicus
Manually annotated by BRENDA team
Li, J.; Wynn, R.M.; Machius, M.; Chuang, J.L.; Karthikeyan, S.; Tomchick, D.R.; Chuang, D.T.
Cross-talk between thiamin diphosphate binding and phosphorylation loop conformation in human branched-chain alpha-keto acid decarboxylase/dehydrogenase
J. Biol. Chem.
279
32968-32978
2004
Rattus norvegicus
Manually annotated by BRENDA team
Murakami, T.; Matsuo, M.; Shimizu, A.; Shimomura, Y.
Dissociation of branched-chain alpha-keto acid dehydrogenase kinase (BDK) from branched-chain alpha-keto acid dehydrogenase complex (BCKDC) by BDK inhibitors
J. Nutr. Sci. Vitaminol.
51
48-50
2005
Rattus norvegicus
Manually annotated by BRENDA team
Kuzuya, T.; Katano, Y.; Nakano, I.; Hirooka, Y.; Itoh, A.; Ishigami, M.; Hayashi, K.; Honda, T.; Goto, H.; Fujita, Y.; Shikano, R.; Muramatsu, Y.; Bajotto, G.; Tamura, T.; Tamura, N.; Shimomura, Y.
Regulation of branched-chain amino acid catabolism in rat models for spontaneous type 2 diabetes mellitus
Biochem. Biophys. Res. Commun.
373
94-98
2008
Rattus norvegicus
Manually annotated by BRENDA team
Akita, K.; Fujimura, Y.; Bajotto, G.; Shimomura, Y.
Inhibition of branched-chain alpha-ketoacid dehydrogenase kinase by thiamine pyrophosphate at different potassium ionic levels
Biosci. Biotechnol. Biochem.
73
1189-1191
2009
Rattus norvegicus
Manually annotated by BRENDA team
Doisaki, M.; Katano, Y.; Nakano, I.; Hirooka, Y.; Itoh, A.; Ishigami, M.; Hayashi, K.; Goto, H.; Fujita, Y.; Kadota, Y.; Kitaura, Y.; Bajotto, G.; Kazama, S.; Tamura, T.; Tamura, N.; Feng, G.G.; Ishikawa, N.; Shimomura, Y.
Regulation of hepatic branched-chain alpha-keto acid dehydrogenase kinase in a rat model for type 2 diabetes mellitus at different stages of the disease
Biochem. Biophys. Res. Commun.
393
303-307
2010
Rattus norvegicus
Manually annotated by BRENDA team
Knapik-Czajka, M.
Stimulation of rat liver branched-chain alpha-keto acid dehydrogenase activity by low doses of bezafibrate
Toxicology
306
101-107
2013
Rattus norvegicus
Manually annotated by BRENDA team
Kadota, Y.; Toyoda, T.; Hayashi-Kato, M.; Kitaura, Y.; Shimomura, Y.
Octanoic acid promotes branched-chain amino acid catabolisms via the inhibition of hepatic branched-chain alpha-keto acid dehydrogenase kinase in rats
Metab. Clin. Exp.
64
1157-1164
2015
Rattus norvegicus (Q00972)
Manually annotated by BRENDA team
Zigler, J.S.; Hodgkinson, C.A.; Wright, M.; Klise, A.; Sundin, O.; Broman, K.W.; Hejtmancik, F.; Huang, H.; Patek, B.; Sergeev, Y.; Hose, S.; Brayton, C.; Xaiodong, J.; Vasquez, D.; Maragakis, N.; Mori, S.; Goldman, D.; Hoke, A.; Sinha, D.
A spontaneous missense mutation in branched chain keto acid dehydrogenase kinase in the rat affects both the central and peripheral nervous systems
PLoS ONE
11
e0160447
2016
Rattus norvegicus (Q00972)
Manually annotated by BRENDA team
Noguchi, S.; Kondo, Y.; Ito, R.; Katayama, T.; Kazama, S.; Kadota, Y.; Kitaura, Y.; Harris, R.A.; Shimomura, Y.
Ca2+-dependent inhibition of branched-chain alpha-ketoacid dehydrogenase kinase by thiamine pyrophosphate
Biochem. Biophys. Res. Commun.
504
916-920
2018
Rattus norvegicus (Q00972)
Manually annotated by BRENDA team
Samuel Zigler, J.; Hodgkinson, C.; Wright, M.; Klise, A.; Sundin, O.; Broman, K.; Hejtmancik, F.; Huang, H.; Patek, B.; Sergeev, Y.; Hose, S.; Brayton, C.; Xaiodong, J.; Vasquez, D.; Maragakis, N.; Mori, S.; Goldman, D.; Hoke, A.; Sinha, D.
A spontaneous missense mutation in branched chain keto acid dehydrogenase kinase in the rat affects both the central and peripheral nervous systems
PLoS ONE
11
e0160447
2016
Rattus norvegicus (Q00972)
Manually annotated by BRENDA team