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Information on Organism Setaria viridis

Synonyms:
Setaria viridis (L.) P.Beauv.; Setaria viridis; Seteria viridis; setaria virid; Panicum flavum;
Word Map for Organism Setaria viridis
TaxTree of Organism Setaria viridis
Condensed Tree View
cellular organisms
Eukaryota can be found in Brenda BRENDA pathways(superkingdom)
Viridiplantae can be found in Brenda BRENDA pathways(kingdom)
Streptophyta can be found in Brenda BRENDA pathways(phylum)
Streptophytina can be found in Brenda (subphylum)
Embryophyta can be found in Brenda BRENDA pathways(clade)
Tracheophyta can be found in Brenda BRENDA pathways(clade)
Euphyllophyta can be found in Brenda BRENDA pathways(clade)
Spermatophyta can be found in Brenda BRENDA pathways(clade)
Magnoliopsida can be found in Brenda BRENDA pathways(class)
Mesangiospermae can be found in Brenda (clade)
Liliopsida can be found in Brenda BRENDA pathways(clade)
Petrosaviidae can be found in Brenda (subclass)
commelinids can be found in Brenda (clade)
Poales can be found in Brenda BRENDA pathways(order)
Poaceae can be found in Brenda BRENDA pathways(family)
PACMAD clade can be found in Brenda BRENDA pathways(clade)
Panicoideae can be found in Brenda BRENDA pathways(subfamily)
Panicodae can be found in Brenda
Paniceae can be found in Brenda BRENDA pathways(tribe)
Cenchrinae can be found in Brenda (subtribe)
Setaria can be found in Brenda BRENDA pathways(genus)
Setaria viridis can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(R)-cysteate degradation
-
-
PWY-6642
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
(S)-reticuline biosynthesis I
-
-
PWY-3581
1,3-propanediol biosynthesis (engineered)
-
-
PWY-7385
1,5-anhydrofructose degradation
-
-
PWY-6992
2-nitrotoluene degradation
-
-
PWY-5641
3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)
-
-
CHLOROPHYLL-SYN
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
-
-
PWY-5531
3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)
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-
PWY-7159
3-(4-hydroxyphenyl)pyruvate biosynthesis
-
-
PWY-5886
3-hydroxypropanoate cycle
-
-
PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
-
-
PWY-5789
4-hydroxybenzoate biosynthesis I (eukaryotes)
-
-
PWY-5754
ABH and Lewis epitopes biosynthesis from type 1 precursor disaccharide
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-
PWY-7832
ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide
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-
PWY-7831
acetaldehyde biosynthesis II
-
-
PWY-6330
acetoin degradation
-
-
acetone degradation I (to methylglyoxal)
-
-
PWY-5451
acetone degradation III (to propane-1,2-diol)
-
-
PWY-7466
adenine and adenosine salvage I
-
-
P121-PWY
adenine and adenosine salvage III
-
-
PWY-6609
adenine and adenosine salvage V
-
-
PWY-6611
adenosine nucleotides degradation II
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SALVADEHYPOX-PWY
aerobic respiration I (cytochrome c)
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-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
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PWY-7279
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
aerobic toluene degradation
-
-
Aflatoxin biosynthesis
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-
alanine metabolism
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-
Alanine, aspartate and glutamate metabolism
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-
Amaryllidacea alkaloids biosynthesis
-
-
PWY-7826
Amino sugar and nucleotide sugar metabolism
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-
Aminobenzoate degradation
-
-
ammonia assimilation cycle I
-
-
PWY-6963
ammonia assimilation cycle II
-
-
PWY-6964
ammonia assimilation cycle III
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AMMASSIM-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
Arachidonic acid metabolism
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-
arachidonic acid metabolism
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-
Arginine and proline metabolism
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-
Arginine biosynthesis
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-
arsenate detoxification I
-
-
PWY-8264
arsenic detoxification (mammals)
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-
PWY-4202
arsenite to oxygen electron transfer
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-
PWY-4521
arsenite to oxygen electron transfer (via azurin)
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-
PWY-7429
aspartate and asparagine metabolism
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-
ATP biosynthesis
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-
PWY-7980
atromentin biosynthesis
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-
PWY-7518
avenanthramide biosynthesis
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-
PWY-8157
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
-
-
PWY-6444
Benzoate degradation
-
-
Bifidobacterium shunt
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-
P124-PWY
Biosynthesis of 12-, 14- and 16-membered macrolides
-
-
Biosynthesis of secondary metabolites
-
-
Biosynthesis of siderophore group nonribosomal peptides
-
-
Brassinosteroid biosynthesis
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-
bupropion degradation
-
-
PWY66-241
Butanoate metabolism
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-
butanol and isobutanol biosynthesis (engineered)
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-
PWY-7396
C4 and CAM-carbon fixation
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-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
-
-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
C5-Branched dibasic acid metabolism
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-
Caffeine metabolism
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-
Calvin-Benson-Bassham cycle
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-
CALVIN-PWY
Carbon fixation in photosynthetic organisms
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-
Carbon fixation pathways in prokaryotes
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-
Carotenoid biosynthesis
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-
carotenoid biosynthesis
-
-
catechol degradation to 2-hydroxypentadienoate I
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-
P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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-
PWY-5419
CDP-6-deoxy-D-gulose biosynthesis
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-
PWY-8139
cellulose biosynthesis
-
-
PWY-1001
cellulose degradation
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-
cellulose degradation II (fungi)
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-
PWY-6788
chitin biosynthesis
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-
PWY-6981
chitin deacetylation
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PWY-7118
Chlorocyclohexane and chlorobenzene degradation
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-
chlorophyll metabolism
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-
cinnamoyl-CoA biosynthesis
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-
PWY-6457
Citrate cycle (TCA cycle)
-
-
citric acid cycle
-
-
CO2 fixation in Crenarchaeota
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-
CO2 fixation into oxaloacetate (anaplerotic)
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PWYQT-4429
coenzyme M biosynthesis
-
-
coenzyme M biosynthesis II
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-
PWY-6643
cyanate degradation
cyclic electron flow
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-
PWY-8270
Cysteine and methionine metabolism
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-
cysteine metabolism
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-
D-galactose degradation I (Leloir pathway)
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-
PWY-6317
degradation of hexoses
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-
Drug metabolism - cytochrome P450
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-
Drug metabolism - other enzymes
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-
dTDP-beta-L-rhamnose biosynthesis
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-
DTDPRHAMSYN-PWY
ephedrine biosynthesis
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-
PWY-5883
erythromycin D biosynthesis
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-
PWY-7106
ethanol fermentation
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-
ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis V (engineered)
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PWY-7124
Fatty acid biosynthesis
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-
fatty acid biosynthesis initiation (type I)
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PWY-5966-1
Fatty acid degradation
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-
Fe(II) oxidation
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PWY-6692
fluoroacetate and fluorothreonine biosynthesis
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PWY-6644
Folate biosynthesis
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-
folate polyglutamylation
formaldehyde assimilation I (serine pathway)
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PWY-1622
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
Fructose and mannose metabolism
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-
Galactose metabolism
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-
GDP-alpha-D-glucose biosynthesis
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PWY-5661
gluconeogenesis
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-
gluconeogenesis I
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-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
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PWY-6142
gluconeogenesis III
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PWY66-399
glucose and glucose-1-phosphate degradation
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-
GLUCOSE1PMETAB-PWY
glucosylglycerol biosynthesis
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PWY-7902
glutamate and glutamine metabolism
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-
glycerol-3-phosphate to fumarate electron transfer
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-
PWY0-1582
Glycerolipid metabolism
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-
glycogen biosynthesis I (from ADP-D-Glucose)
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-
GLYCOGENSYNTH-PWY
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
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PWY-7900
glycogen degradation I
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-
GLYCOCAT-PWY
glycogen degradation II
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PWY-5941
glycogen metabolism
-
-
glycolysis
-
-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
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-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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-
PWY-5484
glycolysis III (from glucose)
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-
ANAGLYCOLYSIS-PWY
Glycosphingolipid biosynthesis - lacto and neolacto series
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-
Glyoxylate and dicarboxylate metabolism
-
-
glyoxylate assimilation
-
-
PWY-5744
glyoxylate cycle
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-
GLYOXYLATE-BYPASS
gossypol biosynthesis
-
-
PWY-5773
guanine and guanosine salvage I
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-
PWY-6620
guanosine nucleotides degradation III
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PWY-6608
heme b biosynthesis I (aerobic)
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-
HEME-BIOSYNTHESIS-II
heme metabolism
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-
heterolactic fermentation
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-
P122-PWY
hydrogen to fumarate electron transfer
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PWY0-1576
incomplete reductive TCA cycle
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-
P42-PWY
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis VI (bacteria)
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-
TRPIAACAT-PWY
inosine 5'-phosphate degradation
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-
PWY-5695
isoleucine metabolism
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-
Isoquinoline alkaloid biosynthesis
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-
jadomycin biosynthesis
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PWY-6679
justicidin B biosynthesis
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PWY-6824
L-asparagine degradation III (mammalian)
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-
ASPARAGINE-DEG1-PWY-1
L-aspartate biosynthesis
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-
ASPARTATESYN-PWY
L-aspartate degradation I
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-
ASPARTATE-DEG1-PWY
L-aspartate degradation II (aerobic)
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-
PWY-8291
L-aspartate degradation III (anaerobic)
-
-
PWY-8294
L-carnitine degradation II
-
-
PWY-3641
L-glutamate degradation II
-
-
GLUTDEG-PWY
L-glutamine biosynthesis I
-
-
GLNSYN-PWY
L-isoleucine biosynthesis I (from threonine)
-
-
ILEUSYN-PWY
L-isoleucine biosynthesis II
-
-
PWY-5101
L-isoleucine biosynthesis III
-
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PWY-5103
L-isoleucine biosynthesis IV
-
-
PWY-5104
L-malate degradation II
-
-
PWY-7686
L-methionine degradation III
-
-
PWY-5082
L-phenylalanine biosynthesis I
-
-
PHESYN
L-phenylalanine degradation II (anaerobic)
-
-
ANAPHENOXI-PWY
L-phenylalanine degradation III
-
-
PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
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-
PWY-6318
L-phenylalanine degradation VI (reductive Stickland reaction)
-
-
PWY-8014
L-tryptophan degradation IV (via indole-3-lactate)
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-
TRPKYNCAT-PWY
L-tryptophan degradation VIII (to tryptophol)
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-
PWY-5081
L-tryptophan degradation XIII (reductive Stickland reaction)
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-
PWY-8017
L-tyrosine biosynthesis I
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-
TYRSYN
L-tyrosine degradation I
-
-
TYRFUMCAT-PWY
L-tyrosine degradation II
-
-
PWY-5151
L-tyrosine degradation III
-
-
PWY3O-4108
L-tyrosine degradation IV (to 4-methylphenol)
-
-
PWY-7514
L-tyrosine degradation V (reductive Stickland reaction)
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-
PWY-8016
L-valine biosynthesis
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-
VALSYN-PWY
Linoleic acid metabolism
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-
lipid metabolism
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-
long chain fatty acid ester synthesis (engineered)
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-
PWY-6873
macrolide antibiotic biosynthesis
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-
malate/L-aspartate shuttle pathway
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-
MALATE-ASPARTATE-SHUTTLE-PWY
matairesinol biosynthesis
-
-
PWY-5466
melatonin degradation I
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-
PWY-6398
Metabolic pathways
-
-
Metabolism of xenobiotics by cytochrome P450
-
-
Methane metabolism
-
-
Methanobacterium thermoautotrophicum biosynthetic metabolism
-
-
PWY-6146
methionine metabolism
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-
methyl indole-3-acetate interconversion
-
-
PWY-6303
methylaspartate cycle
methylsalicylate degradation
-
-
PWY18C3-24
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
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-
FERMENTATION-PWY
NADH to fumarate electron transfer
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-
PWY0-1336
NADPH to cytochrome c oxidase via plastocyanin
-
-
PWY-8271
Neomycin, kanamycin and gentamicin biosynthesis
-
-
Nicotinate and nicotinamide metabolism
-
-
nicotine degradation IV
-
-
PWY66-201
nicotine degradation V
-
-
PWY66-221
Nitrogen metabolism
-
-
nitrogen remobilization from senescing leaves
-
-
PWY-6549
non-pathway related
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-
Novobiocin biosynthesis
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nucleoside and nucleotide degradation (archaea)
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-
PWY-5532
o-diquinones biosynthesis
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-
PWY-6752
Oxidative phosphorylation
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-
oxidative phosphorylation
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-
Pantothenate and CoA biosynthesis
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-
partial TCA cycle (obligate autotrophs)
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-
PWY-5913
Pentose phosphate pathway
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-
pentose phosphate pathway
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-
phenol degradation
-
-
Phenylalanine metabolism
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Phenylalanine, tyrosine and tryptophan biosynthesis
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-
Phenylpropanoid biosynthesis
-
-
phenylpropanoid biosynthesis
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-
phenylpropanoid biosynthesis, initial reactions
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-
PWY1F-467
Photosynthesis
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photosynthesis
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-
photosynthesis light reactions
-
-
PWY-101
plastoquinol-9 biosynthesis I
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-
PWY-1581
polyhydroxybutanoate biosynthesis
-
-
PWY1-3
polyhydroxydecanoate biosynthesis
-
-
PWY-6657
Porphyrin and chlorophyll metabolism
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-
Propanoate metabolism
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-
propionate fermentation
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-
protective electron sinks in the thylakoid membrane (PSII to PTOX)
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-
PWY1YI0-7
purine deoxyribonucleosides degradation I
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-
PWY-7179
purine deoxyribonucleosides degradation II
-
-
PWY-7179-1
Purine metabolism
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-
purine metabolism
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-
purine ribonucleosides degradation
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-
PWY0-1296
Pyrimidine metabolism
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-
pyruvate fermentation to (R)-acetoin I
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PWY-5938
pyruvate fermentation to (R)-acetoin II
-
-
PWY-5939
pyruvate fermentation to (S)-acetoin
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-
PWY-6389
pyruvate fermentation to acetate VIII
-
-
PWY-5768
pyruvate fermentation to acetoin III
-
-
PWY3O-440
pyruvate fermentation to ethanol II
-
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PWY-5486
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
retinol biosynthesis
-
-
PWY-6857
Retinol metabolism
-
-
rosmarinic acid biosynthesis I
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-
PWY-5048
Rubisco shunt
-
-
PWY-5723
saframycin A biosynthesis
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-
PWY-7671
salinosporamide A biosynthesis
-
-
PWY-6627
sesamin biosynthesis
-
-
PWY-5469
Starch and sucrose metabolism
-
-
starch biosynthesis
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-
PWY-622
starch degradation III
-
-
PWY-6731
starch degradation V
-
-
PWY-6737
Steroid hormone biosynthesis
-
-
streptomycin biosynthesis
-
-
PWY-5940
Streptomycin biosynthesis
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-
Styrene degradation
-
-
suberin monomers biosynthesis
succinate to chytochrome c oxidase via cytochrome c6
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-
PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
-
-
PWY0-1353
succinate to cytochrome bo oxidase electron transfer
-
-
PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
succinate to plastoquinol oxidase
-
-
PWY1YI0-8
sucrose biosynthesis I (from photosynthesis)
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-
SUCSYN-PWY
sucrose biosynthesis II
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-
PWY-7238
sucrose degradation II (sucrose synthase)
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PWY-3801
sucrose degradation III (sucrose invertase)
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-
PWY-621
sucrose degradation IV (sucrose phosphorylase)
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PWY-5384
sulfolactate degradation III
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PWY-6638
superoxide radicals degradation
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DETOX1-PWY
superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
superpathway of methylsalicylate metabolism
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PWY18C3-25
superpathway of photosynthetic hydrogen production
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PWY-7731
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
-
-
PWY-7254
TCA cycle VIII (Chlamydia)
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-
TCA-1
toluene degradation II (aerobic) (via 4-methylcatechol)
-
-
TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
-
-
TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
-
-
TOLUENE-DEG-2-OH-PWY
trehalose degradation I (low osmolarity)
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-
TREDEGLOW-PWY
trehalose degradation II (cytosolic)
-
-
PWY0-1182
trehalose degradation IV
-
-
PWY-2722
trehalose degradation V
-
-
PWY-2723
triacylglycerol degradation
-
-
LIPAS-PWY
Tropane, piperidine and pyridine alkaloid biosynthesis
-
-
Tryptophan metabolism
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-
Tyrosine metabolism
-
-
tyrosine metabolism
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-
Ubiquinone and other terpenoid-quinone biosynthesis
-
-
UDP-alpha-D-glucose biosynthesis
-
-
PWY-7343
UDP-N-acetyl-D-galactosamine biosynthesis II
-
-
PWY-5514
UDP-N-acetyl-D-glucosamine biosynthesis II
-
-
UDPNACETYLGALSYN-PWY
valine metabolism
-
-
Valine, leucine and isoleucine biosynthesis
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-
vanillin biosynthesis I
-
-
PWY-5665
vitamin E biosynthesis (tocopherols)
-
-
PWY-1422
vitamin K-epoxide cycle
xanthine and xanthosine salvage
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-
SALVPURINE2-PWY
Xylene degradation
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-
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
-
SvLAC13, SvLAC15 and SvLAC52 are strongly detected exclusively in sclerenchymatic fibers forming the hypodermis and in parenchyma cells located close to vascular bundles
Manually annotated by BRENDA team
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SvLAC13, SvLAC15 and SvLAC52 are strongly detected exclusively in sclerenchymatic fibers forming the hypodermis and in parenchyma cells located close to vascular bundles. SvLAC50 is exclusively detected in sclerenchymatic fibers surrounding the vascular bundle
Manually annotated by BRENDA team
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Setaria viridis)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA