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Information on Organism Rubus plicatus

Synonyms:
Rubus fruticosus; Rubus fruticosus L.; Rubus fruticosus L. sensu typo, non R. fruticosus aggr.; Rubus plicatus; Rubus plicatus Weihe & Nees; European blackberry; shrubby blackberry;
Word Map for Organism Rubus plicatus
TaxTree of Organism Rubus plicatus
Condensed Tree View
cellular organisms
Eukaryota can be found in Brenda BRENDA pathways(superkingdom)
Viridiplantae can be found in Brenda BRENDA pathways(kingdom)
Streptophyta can be found in Brenda BRENDA pathways(phylum)
Streptophytina can be found in Brenda (subphylum)
Embryophyta can be found in Brenda BRENDA pathways(clade)
Tracheophyta can be found in Brenda BRENDA pathways(clade)
Euphyllophyta can be found in Brenda BRENDA pathways(clade)
Spermatophyta can be found in Brenda BRENDA pathways(clade)
Magnoliopsida can be found in Brenda BRENDA pathways(class)
Mesangiospermae can be found in Brenda (clade)
eudicotyledons can be found in Brenda BRENDA pathways(clade)
Gunneridae can be found in Brenda BRENDA pathways(clade)
Pentapetalae can be found in Brenda (clade)
rosids can be found in Brenda BRENDA pathways(clade)
fabids can be found in Brenda BRENDA pathways(clade)
Rosales can be found in Brenda BRENDA pathways(order)
Rosaceae can be found in Brenda BRENDA pathways(family)
Rosoideae can be found in Brenda BRENDA pathways(subfamily)
Rosoideae incertae sedis can be found in Brenda
Rubus can be found in Brenda BRENDA pathways(genus)
Rubus plicatus can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
(S)-reticuline biosynthesis
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1,3-beta-D-glucan biosynthesis
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PWY-6773
24-epi-campesterol, fucosterol, and clionasterol biosynthesis (diatoms)
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PWY-8238
alanine metabolism
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Alanine, aspartate and glutamate metabolism
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Amino sugar and nucleotide sugar metabolism
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ammonia assimilation cycle I
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PWY-6963
ammonia assimilation cycle II
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PWY-6964
ammonia assimilation cycle III
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AMMASSIM-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
Arachidonic acid metabolism
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arachidonic acid metabolism
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Arginine and proline metabolism
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Arginine biosynthesis
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avenanthramide biosynthesis
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PWY-8157
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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PWY-6444
Betalain biosynthesis
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Biosynthesis of secondary metabolites
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C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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cellulose degradation
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chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
cholesterol biosynthesis (algae, late side-chain reductase)
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PWY-8191
cholesterol biosynthesis (diatoms)
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PWY-8239
cholesterol biosynthesis (plants, early side-chain reductase)
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PWY18C3-1
cinnamoyl-CoA biosynthesis
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PWY-6457
Citrate cycle (TCA cycle)
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citric acid cycle
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cycloartenol biosynthesis
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PWY-8028
Cysteine and methionine metabolism
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degradation of hexoses
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ephedrine biosynthesis
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PWY-5883
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
farnesylcysteine salvage pathway
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PWY-6577
firefly bioluminescence
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PWY-7913
flavonoid biosynthesis
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PWY1F-FLAVSYN
Flavonoid biosynthesis
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flavonoid biosynthesis (in equisetum)
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PWY-6787
flavonol biosynthesis
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PWY-3101
formaldehyde assimilation I (serine pathway)
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PWY-1622
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis III
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PWY66-399
glutamate and glutamine metabolism
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Glutathione metabolism
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glutathione-peroxide redox reactions
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PWY-4081
glycogen metabolism
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Glyoxylate and dicarboxylate metabolism
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glyoxylate cycle
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GLYOXYLATE-BYPASS
incomplete reductive TCA cycle
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P42-PWY
Isoquinoline alkaloid biosynthesis
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L-aspartate degradation II (aerobic)
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PWY-8291
L-aspartate degradation III (anaerobic)
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PWY-8294
L-dopa and L-dopachrome biosynthesis
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PWY-6481
L-glutamine biosynthesis I
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GLNSYN-PWY
leucodelphinidin biosynthesis
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PWY-5152
leucopelargonidin and leucocyanidin biosynthesis
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PWY1F-823
malate/L-aspartate shuttle pathway
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MALATE-ASPARTATE-SHUTTLE-PWY
mangrove triterpenoid biosynthesis
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PWY-6109
Metabolic pathways
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Metabolism of xenobiotics by cytochrome P450
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Methane metabolism
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methanol oxidation to formaldehyde IV
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PWY-5506
methylaspartate cycle
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
nitric oxide biosynthesis II (mammals)
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PWY-4983
Nitrogen metabolism
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non-pathway related
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O-Antigen nucleotide sugar biosynthesis
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Other glycan degradation
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Phenylalanine metabolism
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Phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis, initial reactions
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PWY1F-467
pheomelanin biosynthesis
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PWY-7917
phytosterol biosynthesis (plants)
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PWY-2541
pinobanksin biosynthesis
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PWY-5059
pyruvate fermentation to propanoate I
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P108-PWY
Pyruvate metabolism
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reactive oxygen species degradation
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DETOX1-PWY-1
reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
rosmarinic acid biosynthesis I
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PWY-5048
rutin biosynthesis
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PWY-5390
Starch and sucrose metabolism
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starch degradation
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Steroid biosynthesis
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sterol:steryl ester interconversion (yeast)
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PWY-7424
suberin monomers biosynthesis
superoxide radicals degradation
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DETOX1-PWY
superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
syringetin biosynthesis
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PWY-5391
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VIII (Chlamydia)
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TCA-1
teichuronic acid biosynthesis (B. subtilis 168)
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PWY-7820
Terpenoid backbone biosynthesis
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Tryptophan metabolism
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Tyrosine metabolism
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UDP-N-acetyl-D-galactosamine biosynthesis I
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PWY-5512
UDP-N-acetyl-D-galactosamine biosynthesis II
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PWY-5514
xyloglucan degradation II (exoglucanase)
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PWY-6807
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
additional information
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protein content of the enzyme in the different plants and tissue preparations obtained with two different protocols
Manually annotated by BRENDA team
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Rubus plicatus)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA