BRENDA - Enzyme Database show
show all sequences of 2.6.1.21

D-amino acid aminotransferase of Bacillus sphaericus. Enzymologic and spectrometric properties

Yonaha, K.; Misono, H.; Yamamoto, T.; Soda, K.; J. Biol. Chem. 250, 6983-6989 (1975)

Data extracted from this reference:

Crystallization (Commentary)
Crystallization
Organism
-
Lysinibacillus sphaericus
Inhibitors
Inhibitors
Commentary
Organism
Structure
3-Methyl-2-benzothiazolone hydrazone hydrochloride
-
Lysinibacillus sphaericus
Aminoxyacetate
0.01 mM, 90% inhibition
Lysinibacillus sphaericus
beta-Chloro-D-alanine
0.025, 56% inhibition
Lysinibacillus sphaericus
D-cycloserine
-
Lysinibacillus sphaericus
D-penicillamine
1 mM, 73% inhibition
Lysinibacillus sphaericus
HgCl2
0.1 mM, complete inhibition
Lysinibacillus sphaericus
hydroxylamine
0.01 mM, 61% inhibition
Lysinibacillus sphaericus
L-Penicillamine
1 mM, 28% inhibition
Lysinibacillus sphaericus
N-ethylmaleimide
1 mM, 50% inhibition
Lysinibacillus sphaericus
phenylhydrazine
2 mM, 85% inhibition
Lysinibacillus sphaericus
KM Value [mM]
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
1.3
-
D-alanine
pH 8.0, 37C, cosubstrate 2-oxobutanoate
Lysinibacillus sphaericus
3.4
-
2-oxoglutarate
pH 8.0, 37C, cosubstrate D-alanine
Lysinibacillus sphaericus
4.2
-
D-alanine
pH 8.0, 37C, cosubstrate 2-oxoglutarate
Lysinibacillus sphaericus
14
-
2-oxobutanoate
cosubstrate D-alanine
Lysinibacillus sphaericus
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
58000
-
sedimentation equilibrium centrifugation
Lysinibacillus sphaericus
60000
-
gel filtration
Lysinibacillus sphaericus
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Lysinibacillus sphaericus
-
-
-
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
D-2-aminobutanoate + pyruvate
-
636742
Lysinibacillus sphaericus
2-oxobutanoate + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-alanine + 2-oxoglutarate
-
636742
Lysinibacillus sphaericus
pyruvate + D-glutamate
-
636742
Lysinibacillus sphaericus
r
D-aminobutanoate + 2-oxoglutarate
97% of the activity with D-alanine
636742
Lysinibacillus sphaericus
oxobutanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-arginine + 2-oxoglutarate
6% of the activity with D-alanine
636742
Lysinibacillus sphaericus
? + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-asparagine + 2-oxoglutarate
31% of the activity with D-alanine
636742
Lysinibacillus sphaericus
2-oxosuccinamate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-asparagine + pyruvate
-
636742
Lysinibacillus sphaericus
2-oxosuccinamate + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-aspartate + 2-oxoglutarate
30% of the activity with D-alanine
636742
Lysinibacillus sphaericus
2-oxosuccinate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-aspartate + pyruvate
-
636742
Lysinibacillus sphaericus
2-oxosuccinate + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-ethionine + 2-oxoglutarate
76% of the activity with D-alanine
636742
Lysinibacillus sphaericus
4-ethylsulfanyl-2-oxobutanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-glutamate + 2-oxobutanoate
-
636742
Lysinibacillus sphaericus
2-oxoglutarate + 2-aminobutanoate
-
636742
Lysinibacillus sphaericus
?
D-glutamate + pyruvate
-
636742
Lysinibacillus sphaericus
2-oxoglutarate + D-alanine
-
636742
Lysinibacillus sphaericus
r
D-glutamine + 2-oxoglutarate
52% of the activity with D-alanine
636742
Lysinibacillus sphaericus
4-carbamoyl-2-oxobutanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-histidine + 2-oxoglutarate
6% of the activity with D-alanine
636742
Lysinibacillus sphaericus
3-(1H-imidazol-4-yl)-2-oxopropanoate + L-glutamate
-
636742
Lysinibacillus sphaericus
?
D-leucine + 2-oxoglutarate
8% of the activity with D-alanine
636742
Lysinibacillus sphaericus
4-methyl-2-oxopentanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-lysine + pyruvate
weak activity
636742
Lysinibacillus sphaericus
? + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-methionine + 2-oxoglutarate
61% of the activity with D-alanine
636742
Lysinibacillus sphaericus
4-methylsulfanyl-2-oxobutanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-methionine + pyruvate
-
636742
Lysinibacillus sphaericus
4-methylsulfanyl-2-oxobutanoate + L-alanine
-
636742
Lysinibacillus sphaericus
?
D-norleucine + 2-oxoglutarate
46% of the activity with D-alanine
636742
Lysinibacillus sphaericus
2-oxopentanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-norvaline + 2-oxoglutarate
83% of the activity with D-alanine
636742
Lysinibacillus sphaericus
2-oxopentanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-norvaline + pyruvate
-
636742
Lysinibacillus sphaericus
2-oxopentanoate + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-ornithine + 2-oxoglutarate
16% of activity with D-alanine
636742
Lysinibacillus sphaericus
? + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-ornithine + pyruvate
-
636742
Lysinibacillus sphaericus
? + L-alanine
-
636742
Lysinibacillus sphaericus
?
D-phenylalanine + 2-oxoglutarate
32% of the activity with D-alanine
636742
Lysinibacillus sphaericus
phenylpyruvate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-phenylalanine + pyruvate
-
636742
Lysinibacillus sphaericus
phenylpyruvate + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-theanine + 2-oxoglutarate
40% of the activity with D-alanine
636742
Lysinibacillus sphaericus
? + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-tryptophan + 2-oxoglutarate
4% of the activity with D-alanine
636742
Lysinibacillus sphaericus
3-indole-2-oxopropanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-tryptophan + pyruvate
weak activity
636742
Lysinibacillus sphaericus
3-indole-2-oxopropanoate + D-alanine
-
636742
Lysinibacillus sphaericus
?
Subunits
Subunits
Commentary
Organism
dimer
-
Lysinibacillus sphaericus
Temperature Optimum [C]
Temperature Optimum [C]
Temperature Optimum Maximum [C]
Commentary
Organism
37
-
assay at
Lysinibacillus sphaericus
Cofactor
Cofactor
Commentary
Organism
Structure
pyridoxal 5'-phosphate
2 mol of pyridoxal 5'-phosphate per mol of enzyme; a pyridoxal phosphate protein
Lysinibacillus sphaericus
Ki Value [mM]
Ki Value [mM]
Ki Value maximum [mM]
Inhibitor
Commentary
Organism
Structure
0.000011
-
D-cycloserine
pH 8.0, 37C
Lysinibacillus sphaericus
0.00225
-
beta-Chloro-D-alanine
pH 8.0, 37C
Lysinibacillus sphaericus
0.057
-
D-penicillamine
pH 8.0, 37C
Lysinibacillus sphaericus
0.8
-
L-Penicillamine
pH 8.0, 37C
Lysinibacillus sphaericus
Cofactor (protein specific)
Cofactor
Commentary
Organism
Structure
pyridoxal 5'-phosphate
2 mol of pyridoxal 5'-phosphate per mol of enzyme; a pyridoxal phosphate protein
Lysinibacillus sphaericus
Crystallization (Commentary) (protein specific)
Crystallization
Organism
-
Lysinibacillus sphaericus
Inhibitors (protein specific)
Inhibitors
Commentary
Organism
Structure
3-Methyl-2-benzothiazolone hydrazone hydrochloride
-
Lysinibacillus sphaericus
Aminoxyacetate
0.01 mM, 90% inhibition
Lysinibacillus sphaericus
beta-Chloro-D-alanine
0.025, 56% inhibition
Lysinibacillus sphaericus
D-cycloserine
-
Lysinibacillus sphaericus
D-penicillamine
1 mM, 73% inhibition
Lysinibacillus sphaericus
HgCl2
0.1 mM, complete inhibition
Lysinibacillus sphaericus
hydroxylamine
0.01 mM, 61% inhibition
Lysinibacillus sphaericus
L-Penicillamine
1 mM, 28% inhibition
Lysinibacillus sphaericus
N-ethylmaleimide
1 mM, 50% inhibition
Lysinibacillus sphaericus
phenylhydrazine
2 mM, 85% inhibition
Lysinibacillus sphaericus
Ki Value [mM] (protein specific)
Ki Value [mM]
Ki Value maximum [mM]
Inhibitor
Commentary
Organism
Structure
0.000011
-
D-cycloserine
pH 8.0, 37C
Lysinibacillus sphaericus
0.00225
-
beta-Chloro-D-alanine
pH 8.0, 37C
Lysinibacillus sphaericus
0.057
-
D-penicillamine
pH 8.0, 37C
Lysinibacillus sphaericus
0.8
-
L-Penicillamine
pH 8.0, 37C
Lysinibacillus sphaericus
KM Value [mM] (protein specific)
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
1.3
-
D-alanine
pH 8.0, 37C, cosubstrate 2-oxobutanoate
Lysinibacillus sphaericus
3.4
-
2-oxoglutarate
pH 8.0, 37C, cosubstrate D-alanine
Lysinibacillus sphaericus
4.2
-
D-alanine
pH 8.0, 37C, cosubstrate 2-oxoglutarate
Lysinibacillus sphaericus
14
-
2-oxobutanoate
cosubstrate D-alanine
Lysinibacillus sphaericus
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
58000
-
sedimentation equilibrium centrifugation
Lysinibacillus sphaericus
60000
-
gel filtration
Lysinibacillus sphaericus
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
D-2-aminobutanoate + pyruvate
-
636742
Lysinibacillus sphaericus
2-oxobutanoate + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-alanine + 2-oxoglutarate
-
636742
Lysinibacillus sphaericus
pyruvate + D-glutamate
-
636742
Lysinibacillus sphaericus
r
D-aminobutanoate + 2-oxoglutarate
97% of the activity with D-alanine
636742
Lysinibacillus sphaericus
oxobutanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-arginine + 2-oxoglutarate
6% of the activity with D-alanine
636742
Lysinibacillus sphaericus
? + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-asparagine + 2-oxoglutarate
31% of the activity with D-alanine
636742
Lysinibacillus sphaericus
2-oxosuccinamate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-asparagine + pyruvate
-
636742
Lysinibacillus sphaericus
2-oxosuccinamate + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-aspartate + 2-oxoglutarate
30% of the activity with D-alanine
636742
Lysinibacillus sphaericus
2-oxosuccinate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-aspartate + pyruvate
-
636742
Lysinibacillus sphaericus
2-oxosuccinate + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-ethionine + 2-oxoglutarate
76% of the activity with D-alanine
636742
Lysinibacillus sphaericus
4-ethylsulfanyl-2-oxobutanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-glutamate + 2-oxobutanoate
-
636742
Lysinibacillus sphaericus
2-oxoglutarate + 2-aminobutanoate
-
636742
Lysinibacillus sphaericus
?
D-glutamate + pyruvate
-
636742
Lysinibacillus sphaericus
2-oxoglutarate + D-alanine
-
636742
Lysinibacillus sphaericus
r
D-glutamine + 2-oxoglutarate
52% of the activity with D-alanine
636742
Lysinibacillus sphaericus
4-carbamoyl-2-oxobutanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-histidine + 2-oxoglutarate
6% of the activity with D-alanine
636742
Lysinibacillus sphaericus
3-(1H-imidazol-4-yl)-2-oxopropanoate + L-glutamate
-
636742
Lysinibacillus sphaericus
?
D-leucine + 2-oxoglutarate
8% of the activity with D-alanine
636742
Lysinibacillus sphaericus
4-methyl-2-oxopentanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-lysine + pyruvate
weak activity
636742
Lysinibacillus sphaericus
? + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-methionine + 2-oxoglutarate
61% of the activity with D-alanine
636742
Lysinibacillus sphaericus
4-methylsulfanyl-2-oxobutanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-methionine + pyruvate
-
636742
Lysinibacillus sphaericus
4-methylsulfanyl-2-oxobutanoate + L-alanine
-
636742
Lysinibacillus sphaericus
?
D-norleucine + 2-oxoglutarate
46% of the activity with D-alanine
636742
Lysinibacillus sphaericus
2-oxopentanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-norvaline + 2-oxoglutarate
83% of the activity with D-alanine
636742
Lysinibacillus sphaericus
2-oxopentanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-norvaline + pyruvate
-
636742
Lysinibacillus sphaericus
2-oxopentanoate + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-ornithine + 2-oxoglutarate
16% of activity with D-alanine
636742
Lysinibacillus sphaericus
? + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-ornithine + pyruvate
-
636742
Lysinibacillus sphaericus
? + L-alanine
-
636742
Lysinibacillus sphaericus
?
D-phenylalanine + 2-oxoglutarate
32% of the activity with D-alanine
636742
Lysinibacillus sphaericus
phenylpyruvate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-phenylalanine + pyruvate
-
636742
Lysinibacillus sphaericus
phenylpyruvate + D-alanine
-
636742
Lysinibacillus sphaericus
?
D-theanine + 2-oxoglutarate
40% of the activity with D-alanine
636742
Lysinibacillus sphaericus
? + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-tryptophan + 2-oxoglutarate
4% of the activity with D-alanine
636742
Lysinibacillus sphaericus
3-indole-2-oxopropanoate + D-glutamate
-
636742
Lysinibacillus sphaericus
?
D-tryptophan + pyruvate
weak activity
636742
Lysinibacillus sphaericus
3-indole-2-oxopropanoate + D-alanine
-
636742
Lysinibacillus sphaericus
?
Subunits (protein specific)
Subunits
Commentary
Organism
dimer
-
Lysinibacillus sphaericus
Temperature Optimum [C] (protein specific)
Temperature Optimum [C]
Temperature Optimum Maximum [C]
Commentary
Organism
37
-
assay at
Lysinibacillus sphaericus
Other publictions for EC 2.6.1.21
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [C]
Temperature Range [C]
Temperature Stability [C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [C] (protein specific)
Temperature Range [C] (protein specific)
Temperature Stability [C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
748674
Mortuza
Overexpression of a newly ide ...
Mycolicibacterium smegmatis, Mycolicibacterium smegmatis mc2155
Mol. Microbiol.
107
198-213
2018
-
-
-
-
-
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-
1
-
-
-
-
-
3
-
-
1
-
-
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2
-
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-
-
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1
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1
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1
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1
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-
-
2
-
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-
-
-
-
-
-
-
-
-
-
-
-
-
739709
Du
[Expression and characterizati ...
Paraburkholderia phytofirmans, Paraburkholderia phytofirmans PsJN
Sheng Wu Gong Cheng Xue Bao
32
912-926
2016
-
-
1
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2
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1
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1
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4
-
1
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1
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-
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-
721250
Schtzle
-
Enzymatic asymmetric synthesis ...
Aspergillus fischeri, Aspergillus fumigatus, Aspergillus oryzae, Aspergillus terreus, Fusarium graminearum, Mycolicibacterium vanbaalenii, Penicillium chrysogenum
Adv. Synth. Catal.
353
2439-2445
2011
-
-
7
-
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7
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84
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7
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8
7
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7
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7
7
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84
-
7
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8
7
-
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-
636751
Ro
Effects of salts on the confor ...
Bacillus sp. (in: Bacteria)
J. Biochem. Mol. Biol.
35
306-312
2002
-
-
1
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6
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1
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1
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1
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6
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-
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636750
Gutierrez
Modulation of activity and sub ...
Bacillus sp. (in: Bacteria)
Eur. J. Biochem.
267
7218-7223
2000
-
-
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1
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1
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1
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-
-
-
636746
Fuchikami
Construction and properties of ...
Bacillus sp. (in: Bacteria)
J. Biochem.
124
905-910
1998
-
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2
-
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1
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-
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-
-
-
17
-
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-
1
2
-
-
-
-
-
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2
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17
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1
2
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636747
Gutierrez
A mutant D-amino acid aminotra ...
Bacillus sp. (in: Bacteria)
Protein Eng.
11
53-58
1998
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1
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1
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1
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1
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636748
Sugio
Crystal structures of L201A mu ...
Bacillus sp. (in: Bacteria)
Protein Eng.
11
613-619
1998
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1
1
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1
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1
1
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636749
Peisach
Crystallographic study of step ...
Bacillus sp. (in: Bacteria)
Biochemistry
37
4958-4967
1998
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1
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2
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636745
Ro
Site-directed mutagenesis of t ...
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FEBS Lett.
398
141-145
1996
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1
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6
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12
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1
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1
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1
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7
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1
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6
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12
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1
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1
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7
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636743
Kishimoto
Role of leucine 201 of thermos ...
Bacillus sp. (in: Bacteria), Bacillus sp. (in: Bacteria) YM-1
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691-696
1995
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1
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6
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1
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2
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3
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1
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1
1
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2
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1
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6
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1
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2
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3
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636744
Sugio
Crystal structure of a D-amino ...
Bacillus sp. (in: Bacteria), Lysinibacillus sphaericus
Biochemistry
34
9661-9669
1995
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1
1
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1
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2
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1
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2
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1
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1
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1
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1
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2
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636739
Soper
Inactivation of bacterial D-am ...
Lysinibacillus sphaericus
J. Biol. Chem.
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3170-3175
1977
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1
1
1
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1
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1
1
1
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1
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1
1
1
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636740
Soper
Inactivation of bacterial D-am ...
Bacillus subtilis, Lysinibacillus sphaericus
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252
1571-1575
1977
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2
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2
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2
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2
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2
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636742
Yonaha
D-amino acid aminotransferase ...
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250
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1975
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1
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4
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27
1
1
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1
4
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1
1
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10
4
4
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2
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27
1
1
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636738
Ogawa
Occurrence of D-amino acid ami ...
Pisum sativum
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52
998-1002
1973
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3
2
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1
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1
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1
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1
1
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12
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1
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1
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1
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1
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3
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2
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1
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1
1
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12
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1
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1
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636741
Gosling
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The partial purification and s ...
Bradyrhizobium japonicum
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1
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1
1
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3
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1
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1
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1
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1
1
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1
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3
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1
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1
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636736
Martinez-Carrion
D-Alanine-D-glutamate transami ...
Bacillus subtilis
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1965
2
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1
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1
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1
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1
1
18
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1
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1
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2
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1
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1
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1
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1
1
18
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1
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636737
Martinez-Carrion
D-Alanine-D-glutamate transami ...
Bacillus subtilis
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3547-3552
1965
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1
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1
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19
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1
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1
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