BRENDA - Enzyme Database
show all sequences of 1.8.5.4

Characterizing a monotopic membrane enzyme. Biochemical, enzymatic and crystallization studies on Aquifex aeolicus sulfide:quinone oxidoreductase

Marcia, M.; Langer, J.D.; Parcej, D.; Vogel, V.; Peng, G.; Michel, H.; Biochim. Biophys. Acta 1798, 2114-2123 (2010)

Data extracted from this reference:

Crystallization (Commentary)
Crystallization
Organism
; crystallization in two crystal forms of hexagonal, prism shape and thin, elongated shape
Aquifex aeolicus
Inhibitors
Inhibitors
Commentary
Organism
Structure
Antimycin
; competitive
Aquifex aeolicus
KM Value [mM]
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
0.0016
-
ubiquinone-4
in 50 mM Tris-HCl, pH 7.4, 40°C; pH 7.4, temperature not specified in the publication
Aquifex aeolicus
0.00216
-
decylubiquinone
in 50 mM Tris-HCl, pH 7.4, 40°C; pH 7.4, temperature not specified in the publication
Aquifex aeolicus
0.0054
-
ubiquinone-1
in 50 mM Tris-HCl, pH 7.4, 40°C; pH 7.4, temperature not specified in the publication
Aquifex aeolicus
0.00594
-
Sulfide
in 50 mM Tris-HCl, pH 7.4, 40°C; pH 7.4, temperature not specified in the publication
Aquifex aeolicus
0.00643
-
ubiquinone-9
in 50 mM Tris-HCl, pH 7.4, 40°C; pH 7.4, temperature not specified in the publication
Aquifex aeolicus
Localization
Localization
Commentary
Organism
GeneOntology No.
Textmining
membrane
monotopic membrane enzyme
Aquifex aeolicus
16020
-
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
16000
-
sedimentation equilibrium centrifugation
Aquifex aeolicus
47000
-
3 * 47000, SDS-PAGE; x * 47000, SDS-PAGE
Aquifex aeolicus
120000
-
gel filtration
Aquifex aeolicus
160000
-
analytical ultracentrifugation
Aquifex aeolicus
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Aquifex aeolicus
-
-
-
Aquifex aeolicus
O67931
-
-
Purification (Commentary)
Commentary
Organism
MonoQ column chromatography, TSK-1 gel filtration, and TSK-2 gel filtration
Aquifex aeolicus
Specific Activity [micromol/min/mg]
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
71.4
-
at 40°C, pH 7.4
Aquifex aeolicus
Storage Stability
Storage Stability
Organism
4C, protein is stable and monodisperse in 50 mM dodecyl-D-maltoside for weeks, either in the absence of salt or in the presence of N 1 M NaCl
Aquifex aeolicus
4°C, purified protein in 3% (w/v) dodecyl-beta-D-maltoside either in the absence of salt or in the presence of N 1 M NaCl, six weeks, no loss of activity
Aquifex aeolicus
80°C, purified protein in 3% (w/v) dodecyl-beta-D-maltoside either in the absence of salt or in the presence of N 1 M NaCl, one day, 50% loss of activity
Aquifex aeolicus
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
sulfide + decylubiquinone
-
714310
Aquifex aeolicus
sulfur + decylubiquinol
-
-
-
?
sulfide + ubiquinone-1
-
714310
Aquifex aeolicus
sulfur + ubiquinol-1
-
-
-
?
sulfide + ubiquinone-4
-
714310
Aquifex aeolicus
sulfur + ubiquinol-4
-
-
-
?
sulfide + ubiquinone-9
-
714310
Aquifex aeolicus
sulfur + ubiquinol-9
-
-
-
?
Subunits
Subunits
Commentary
Organism
homotrimer
3 * 47000, SDS-PAGE
Aquifex aeolicus
multimer
x * 47000, SDS-PAGE
Aquifex aeolicus
Temperature Optimum [°C]
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
80
-
; the activity is highest at 80°C (the highest temperature tested)
Aquifex aeolicus
Temperature Stability [°C]
Temperature Stability Minimum [°C]
Temperature Stability Maximum [°C]
Commentary
Organism
80
-
50% loss of activity after one day; the half-life at 80°C is 32 h
Aquifex aeolicus
pH Optimum
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
6.5
-
-
Aquifex aeolicus
Cofactor
Cofactor
Commentary
Organism
Structure
FAD
one FAD molecule per protein monomer
Aquifex aeolicus
IC50 Value
IC50 Value
IC50 Value Maximum
Commentary
Organism
Inhibitor
Structure
0.015
-
in 50 mM Tris-HCl, pH 7.4, 40°C
Aquifex aeolicus
Antimycin
Cofactor (protein specific)
Cofactor
Commentary
Organism
Structure
FAD
one FAD molecule per protein monomer
Aquifex aeolicus
Crystallization (Commentary) (protein specific)
Crystallization
Organism
-
Aquifex aeolicus
crystallization in two crystal forms of hexagonal, prism shape and thin, elongated shape
Aquifex aeolicus
IC50 Value (protein specific)
IC50 Value
IC50 Value Maximum
Commentary
Organism
Inhibitor
Structure
0.015
-
in 50 mM Tris-HCl, pH 7.4, 40°C
Aquifex aeolicus
Antimycin
Inhibitors (protein specific)
Inhibitors
Commentary
Organism
Structure
Antimycin
competitive
Aquifex aeolicus
Antimycin
-
Aquifex aeolicus
KM Value [mM] (protein specific)
KM Value [mM]
KM Value Maximum [mM]
Substrate
Commentary
Organism
Structure
0.0016
-
ubiquinone-4
pH 7.4, temperature not specified in the publication
Aquifex aeolicus
0.0016
-
ubiquinone-4
in 50 mM Tris-HCl, pH 7.4, 40°C
Aquifex aeolicus
0.00216
-
decylubiquinone
pH 7.4, temperature not specified in the publication
Aquifex aeolicus
0.00216
-
decylubiquinone
in 50 mM Tris-HCl, pH 7.4, 40°C
Aquifex aeolicus
0.0054
-
ubiquinone-1
pH 7.4, temperature not specified in the publication
Aquifex aeolicus
0.0054
-
ubiquinone-1
in 50 mM Tris-HCl, pH 7.4, 40°C
Aquifex aeolicus
0.00594
-
Sulfide
pH 7.4, temperature not specified in the publication
Aquifex aeolicus
0.00594
-
Sulfide
in 50 mM Tris-HCl, pH 7.4, 40°C
Aquifex aeolicus
0.00643
-
ubiquinone-9
pH 7.4, temperature not specified in the publication
Aquifex aeolicus
0.00643
-
ubiquinone-9
in 50 mM Tris-HCl, pH 7.4, 40°C
Aquifex aeolicus
Localization (protein specific)
Localization
Commentary
Organism
GeneOntology No.
Textmining
membrane
monotopic membrane enzyme
Aquifex aeolicus
16020
-
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
16000
-
sedimentation equilibrium centrifugation
Aquifex aeolicus
47000
-
x * 47000, SDS-PAGE
Aquifex aeolicus
47000
-
3 * 47000, SDS-PAGE
Aquifex aeolicus
120000
-
gel filtration
Aquifex aeolicus
160000
-
analytical ultracentrifugation
Aquifex aeolicus
Purification (Commentary) (protein specific)
Commentary
Organism
MonoQ column chromatography, TSK-1 gel filtration, and TSK-2 gel filtration
Aquifex aeolicus
Specific Activity [micromol/min/mg] (protein specific)
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
71.4
-
at 40°C, pH 7.4
Aquifex aeolicus
Storage Stability (protein specific)
Storage Stability
Organism
4C, protein is stable and monodisperse in 50 mM dodecyl-D-maltoside for weeks, either in the absence of salt or in the presence of N 1 M NaCl
Aquifex aeolicus
4°C, purified protein in 3% (w/v) dodecyl-beta-D-maltoside either in the absence of salt or in the presence of N 1 M NaCl, six weeks, no loss of activity
Aquifex aeolicus
80°C, purified protein in 3% (w/v) dodecyl-beta-D-maltoside either in the absence of salt or in the presence of N 1 M NaCl, one day, 50% loss of activity
Aquifex aeolicus
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
sulfide + decylubiquinone
-
714310
Aquifex aeolicus
sulfur + decylubiquinol
-
-
-
?
sulfide + ubiquinone-1
-
714310
Aquifex aeolicus
sulfur + ubiquinol-1
-
-
-
?
sulfide + ubiquinone-4
-
714310
Aquifex aeolicus
sulfur + ubiquinol-4
-
-
-
?
sulfide + ubiquinone-9
-
714310
Aquifex aeolicus
sulfur + ubiquinol-9
-
-
-
?
Subunits (protein specific)
Subunits
Commentary
Organism
homotrimer
3 * 47000, SDS-PAGE
Aquifex aeolicus
multimer
x * 47000, SDS-PAGE
Aquifex aeolicus
Temperature Optimum [°C] (protein specific)
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
80
-
-
Aquifex aeolicus
80
-
the activity is highest at 80°C (the highest temperature tested)
Aquifex aeolicus
Temperature Stability [°C] (protein specific)
Temperature Stability Minimum [°C]
Temperature Stability Maximum [°C]
Commentary
Organism
80
-
50% loss of activity after one day
Aquifex aeolicus
80
-
the half-life at 80°C is 32 h
Aquifex aeolicus
pH Optimum (protein specific)
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
6.5
-
-
Aquifex aeolicus
Other publictions for EC 1.8.5.4
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
742905
Landry
H2S oxidation by nanodisc-emb ...
Homo sapiens
J. Biol. Chem.
292
11641-11649
2017
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1
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2
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1
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1
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2
2
742387
Xin
Recombinant Escherichia coli ...
Cupriavidus pinatubonensis
Environ. Microbiol.
18
5123-5136
2016
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1
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1
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4
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1
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742540
Shuman
A sulfidequinone oxidoreducta ...
Chlorobaculum tepidum
FEMS Microbiol. Lett.
363
1-8
2016
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1
-
-
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1
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1
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3
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1
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1
1
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1
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-
-
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-
742790
Han
Sulfide consumption in Sulfur ...
Sulfurimonas denitrificans, Sulfurimonas denitrificans DSM-1251
J. Bacteriol.
198
1260-1267
2016
-
-
1
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6
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742453
Harb
Insertion and self-diffusion ...
Aquifex aeolicus
Eur. Phys. J. E Soft Matter
38
110
2015
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-
-
-
-
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1
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4
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1
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1
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742883
Mishanina
Transient kinetic analysis of ...
Homo sapiens
J. Biol. Chem.
290
25072-25080
2015
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743229
Jackson
Role of human sulfide quinone ...
Homo sapiens
Methods Enzymol.
554
255-270
2015
2
-
1
-
-
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-
7
1
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1
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3
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1
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2
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1
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8
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1
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1
1
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7
1
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1
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1
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2
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4
1
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8
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7
7
738630
Libiad
Organization of the human mito ...
Homo sapiens
J. Biol. Chem.
289
30901-30910
2014
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1
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4
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3
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4
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1
1
-
4
4
741767
Zhang
Characterization of the kinet ...
Acidithiobacillus ferrooxidans
Arch. Biochem. Biophys.
564
110-119
2014
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1
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8
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8
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1
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1
1
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7
1
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1
1
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8
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8
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1
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1
1
1
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1
7
1
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8
8
742246
Ackermann
The vertebrate homologue of s ...
Mus musculus, Rattus norvegicus
Cell Tissue Res.
358
779-792
2014
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2
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1
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4
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24
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24
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2
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727080
Lencina
Characterization of the type I ...
Caldivirga maquilingensis, Caldivirga maquilingensis IC-167
Biochim. Biophys. Acta
1827
266-275
2013
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1
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7
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2
7
2
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1
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5
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1
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12
1
1
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8
1
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1
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1
1
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7
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2
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7
2
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1
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1
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12
1
1
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8
1
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1
1
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-
742250
Bauzai
On the importance of anion-pi ...
Acidithiobacillus ferrooxidans
Chem. Asian J.
8
2708-2713
2013
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1
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1
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1
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1
1
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724350
Jackson
Human sulfide:Quinone oxidored ...
Homo sapiens
Biochemistry
51
6804-6815
2012
-
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1
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7
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2
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6
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1
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5
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7
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1
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1
1
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7
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2
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1
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5
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7
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7
7
724681
Linden
Sulphide quinone reductase con ...
Mus musculus
Br. J. Pharmacol.
165
2178-2190
2012
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1
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725835
Cherney
Structure-activity characteriz ...
Acidithiobacillus ferrooxidans, Acidithiobacillus ferrooxidans DSM 14882
J. Struct. Biol.
178
319-328
2012
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1
1
7
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5
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