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Information on EC 3.2.1.97 - endo-alpha-N-acetylgalactosaminidase and Organism(s) Bifidobacterium longum and UniProt Accession Q3T552

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IUBMB Comments
The enzyme catalyses the liberation of Gal-(1->3)-beta-GalNAc alpha-linked to serine or threonine residues of mucin-type glycoproteins. EngBF from the bacterium Bifidobacterium longum specifically acts on core 1-type O-glycan to release the disaccharide Gal-(1->3)-beta-GalNAc. The enzymes from the bacteria Clostridium perfringens, Enterococcus faecalis, Propionibacterium acnes and Alcaligenes faecalis show broader specificity (e.g. they can also release the core 2 trisaccharide Gal-(1->3)-beta-(GlcNAc-(1->6)-beta)-GalNAc or the core 3 disaccharide GlcNAc-(1->3)-beta-GalNAc) [1,2]. The enzyme may play an important role in the degradation and utilization of mucins having core 1 O-glycan.
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Bifidobacterium longum
UNIPROT: Q3T552
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The taxonomic range for the selected organisms is: Bifidobacterium longum
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota
Synonyms
endo-alpha-n-acetylgalactosaminidase, engcp, engbf, nagbb, spgh101, endo-alpha-galnac-ase, endo-ef, endo-beta-n-acetylgalactosaminidase, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
endo-alpha-GalNAc-ase
-
endo-alpha-N-acetylgalactosaminidase
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acetylgalactosaminidase, endo-alpha
-
-
-
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D-galactosyl-N-acetyl-alpha-D-galactosamine D-galactosyl-N-acetylgalactosaminohydrolase
-
-
-
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endo-alpha-acetylgalactosaminidase
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-
-
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endo-alpha-GalNAc-ase
-
-
endo-alpha-N-acetylgalactosaminidase
additional information
-
the enzyme belongs to the glycoside hydrolase family 101, GH101
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hydrolysis of O-glycosyl bond
-
-
-
-
SYSTEMATIC NAME
IUBMB Comments
glycopeptide-D-galactosyl-N-acetyl-alpha-D-galactosamine D-galactosyl-N-acetyl-galactosaminohydrolase
The enzyme catalyses the liberation of Gal-(1->3)-beta-GalNAc alpha-linked to serine or threonine residues of mucin-type glycoproteins. EngBF from the bacterium Bifidobacterium longum specifically acts on core 1-type O-glycan to release the disaccharide Gal-(1->3)-beta-GalNAc. The enzymes from the bacteria Clostridium perfringens, Enterococcus faecalis, Propionibacterium acnes and Alcaligenes faecalis show broader specificity (e.g. they can also release the core 2 trisaccharide Gal-(1->3)-beta-(GlcNAc-(1->6)-beta)-GalNAc or the core 3 disaccharide GlcNAc-(1->3)-beta-GalNAc) [1,2]. The enzyme may play an important role in the degradation and utilization of mucins having core 1 O-glycan.
CAS REGISTRY NUMBER
COMMENTARY hide
59793-96-3
-
SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosaminyl-L-serine-[protein] + H2O
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosamine + L-serine-[protein]
show the reaction diagram
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosaminyl-L-threonine-[protein] + H2O
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosamine + L-threonine-[protein]
show the reaction diagram
asialofetuin + H2O
Galbeta(1-3)GalNAc + ?
show the reaction diagram
-
-
-
?
Galbeta(1,3)GalNAc-asialofetuin + H2O
Galbeta(1,3)GalNAc + asialofetuin
show the reaction diagram
pH 5.0, 37°C
-
-
?
Galbeta(1,3)GalNAcalpha-1-p-nitrophenol + H2O
p-nitrophenol + Galbeta(1,3)GalNAc
show the reaction diagram
Galbeta(1-3)GalNAcalpha1-p-nitrophenol + H2O
Galbeta(1-3)GalNAc + p-nitrophenol
show the reaction diagram
-
-
-
?
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosaminyl-L-serine-[protein] + H2O
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosamine + L-serine-[protein]
show the reaction diagram
-
-
-
?
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosaminyl-L-threonine-[protein] + H2O
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosamine + L-threonine-[protein]
show the reaction diagram
-
-
-
?
4-nitrophenyl beta-D-Gal-(1->3)-alpha-D-GalNAc + H2O
4-nitrophenol + beta-D-Gal-(1->3)-alpha-D-GalNAc
show the reaction diagram
-
-
-
-
?
Gal-beta-1,3-GalNAc-alpha-1p-nitrophenol + H2O
p-nitrophenol + Gal-beta-1,3-GalNAc
show the reaction diagram
pH 5.0, 37°C
-
-
?
Galbeta1-3GalNAcalpha1-pNP + H2O
?
show the reaction diagram
-
100% relative activity
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-
?
GalNAcbeta1-3GalNAcalpha1-pNP + H2O
?
show the reaction diagram
-
17.3% relative activity
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-
?
gastric mucin + H2O
disaccharide + ?
show the reaction diagram
-
EngBF does not release oligosaccharides from intact gastric mucin, but releases core 1 disaccharide from the gastric mucin pretreated with commercial sialidase and with the recombinant exo-alpha-N-acetylglucosamindase
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-
?
Glcbeta1-3GalNAcalpha1-pNP + H2O
?
show the reaction diagram
-
35.3% relative activity
-
-
?
GlcNAcbeta1-3GalNAcalpha1-pNP + H2O
?
show the reaction diagram
-
0.3% relative activity
-
-
?
additional information
?
-
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosaminyl-L-serine-[protein] + H2O
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosamine + L-serine-[protein]
show the reaction diagram
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosaminyl-L-threonine-[protein] + H2O
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosamine + L-threonine-[protein]
show the reaction diagram
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosaminyl-L-serine-[protein] + H2O
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosamine + L-serine-[protein]
show the reaction diagram
-
-
-
?
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosaminyl-L-threonine-[protein] + H2O
3-O-beta-D-galactosyl-N-acetyl-alpha-D-galactosamine + L-threonine-[protein]
show the reaction diagram
-
-
-
?
additional information
?
-
METALS and IONS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Co2+
-
activates at 5 mM
Mg2+
-
activates at 5 mM
Mn2+
-
activates at 5 mM
Ni2+
-
activates at 5 mM
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
Cd2+
-
strong inhibition at 5 mM
Zn2+
-
strong inhibition at 5 mM
additional information
-
EngBF is not significantly inhibited by divalent cations
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KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.0218 - 0.165
Galbeta(1,3)GalNAcalpha-1-p-nitrophenol
0.0218 - 0.107
Galbeta(1-3)GalNAcalpha1-p-nitrophenol
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.23 - 37
Galbeta(1,3)GalNAcalpha-1-p-nitrophenol
0.23 - 17.8
Galbeta(1-3)GalNAcalpha1-p-nitrophenol
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
additional information
-
optimal pH between pH 5-6 for all hydrolyzable substrates of EngBF
pH RANGE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4 - 6
68% activity at pH 4.0, 73% activity at pH 6.0
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
200000
gel filtration
210000
predicted from amino acid sequence
210269
x * 210269, calculated from sequence
210300
calculated from amino acid sequence
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
monomer
1 * 200000, SDS-PAGE, gel filtration
additional information
-
docking analysis and structural model building, overview
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
purified recombinant His-tagged enzyme, X-ray diffraction structure analysis at 2.0-2.5 A resolution
-
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
D1058N
activity in cell-free extracts of Escherichia coli almost comparable to wild-type
D1106N
D1248N
10-30% activity compared to wild-type
D601N
D605N
D612N
D655N
D665N
D682N
D700N
D762A
D762N
D789N
D839N
D864N
D898N
E1276Q
E1302Q
E1350Q
E679Q
E723Q
E822A
E822Q
significant decrease in activity (below 2%)
E828Q
E882Q
Escherichia coli cells expressing the mutant enzyme exhibit less than 2% of the wild-type endo-alpha-GalNAc activity
S1248N
Escherichia coli cells expressing the mutant enzyme exhibit 10-30% of the wild-type endo-alpha-GalNAc activity
D1295A
-
site-directed mutagenesis, the mutant shows highly reduced activity compared to the truncated wild-type enzyme
D682A
-
site-directed mutagenesis, the mutant shows reduced activity compared to the truncated wild-type enzyme
D789A
-
site-directed mutagenesis, the mutant shows reduced activity compared to the truncated wild-type enzyme
E822A
-
site-directed mutagenesis, the mutant shows highly reduced activity compared to the truncated wild-type enzyme
K1199A
-
site-directed mutagenesis, the mutant shows increased activity compared to the truncated wild-type enzyme
N720A
-
site-directed mutagenesis, the mutant shows increased activity compared to the truncated wild-type enzyme
Q894A
-
site-directed mutagenesis, the mutant shows increased activity compared to the truncated wild-type enzyme
W748A
-
site-directed mutagenesis, the mutant shows highly reduced activity compared to the truncated wild-type enzyme
W748F
-
site-directed mutagenesis, the mutant shows highly reduced activity compared to the truncated wild-type enzyme
W748Y
-
site-directed mutagenesis, the mutant shows highly reduced activity compared to the truncated wild-type enzyme
W750A
-
site-directed mutagenesis, the mutant shows highly reduced activity compared to the truncated wild-type enzyme
W750F
-
site-directed mutagenesis, the mutant shows reduced activity compared to the truncated wild-type enzyme
W750Y
-
site-directed mutagenesis, the mutant shows reduced activity compared to the truncated wild-type enzyme
Y787F
-
site-directed mutagenesis, the mutant shows highly reduced activity compared to the truncated wild-type enzyme
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
45
pH 5.0, 30 min, enzyme retains 73% of initial activity
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
recombinant enzyme
recombinant His-tagged EngBF from Escherichia coli strain BL21(DE3) by affinity chromatography and gel filtration
-
recombinant His-tagged EngBF truncation and point mutants from Escherichia coli strain BL21(DE3) by nickel affinity and anion exchange chromatography, and gel filtration
-
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expression in Escherichia coli
expression in Escherichia coli BL21
expression in Escherichia coli, wild-type and mutants D601N, D605N, D612N, D655N, D665N, E679Q, D682N, D682A, D700N, E723Q, D762N, D762A, D789N, D789A, E822Q, E822A, E828Q, D839N, D864N, D898N, D1058N, D1106N, D1248N, E1276Q, E1302Q, E1350Q
expression of His-tagged EngBF in Escherichia coli strain BL21(DE3)
-
expression of His-tagged truncated EngBF mutants, comprising residues 340-1528 and 340-1694, respectively, and point mutants in Escherichia coli strain BL21(DE3)
-
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Fujita, K.; Oura, F.; Nagamine, N.; Katayama, T.; Hiratake, J.; Sakata, K.; Kumagai, H.; Yamamoto, K.
Identification and molecular cloning of a novel glycoside hydrolase family of core 1 type O-glycan-specific endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum
J. Biol. Chem.
280
37415-37422
2005
Bifidobacterium longum (Q3T552), Bifidobacterium longum, Bifidobacterium longum JCM 1217 (Q3T552)
Manually annotated by BRENDA team
Katayama, T.; Fujita, K.; Yamamoto, K.
Novel bifidobacterial glycosidases acting on sugar chains of mucin glycoproteins
J. Biosci. Bioeng.
99
457-465
2005
Bifidobacterium bifidum, Bifidobacterium bifidum ATCC 29521, Bifidobacterium bifidum JCM 7004, Bifidobacterium breve, Bifidobacterium breve JCM 1192, Bifidobacterium longum, Bifidobacterium longum (Q3T552), Bifidobacterium longum JCM 1217 (Q3T552), Bifidobacterium longum JCM 7054
Manually annotated by BRENDA team
Ashida, H.; Maki, R.; Ozawa, H.; Tani, Y.; Kiyohara, M.; Fujita, M.; Imamura, A.; Ishida, H.; Kiso, M.; Yamamoto, K.
Characterization of two different endo-alpha-N-acetylgalactosaminidases from probiotic and pathogenic enterobacteria, Bifidobacterium longum and Clostridium perfringens
Glycobiology
18
727-734
2008
Bifidobacterium longum, Clostridium perfringens (Q8XMJ5), Clostridium perfringens, Clostridium perfringens 13 (Q8XMJ5)
Manually annotated by BRENDA team
Ashida, H.; Ozawa, H.; Fujita, K.; Suzuki, S.; Yamamoto, K.
Syntheses of mucin-type O-glycopeptides and oligosaccharides using transglycosylation and reverse-hydrolysis activities of Bifidobacterium endo-alpha-N-acetylgalactosaminidase
Glycoconj. J.
27
125-132
2010
Bifidobacterium longum, Bifidobacterium longum JCM 1217
Manually annotated by BRENDA team
Suzuki, R.; Katayama, T.; Kitaoka, M.; Kumagai, H.; Wakagi, T.; Shoun, H.; Ashida, H.; Yamamoto, K.; Fushinobu, S.
Crystallographic and mutational analyses of substrate recognition of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum
J. Biochem.
146
389-398
2009
Bifidobacterium longum
Manually annotated by BRENDA team