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Sequence of Q9V4D8_DROME

EC Number:3.2.2.29

EC Number
Recommended Name
Accession Code
Organism
No of amino acids
Molecular Weight [Da]
Source
thymine-DNA glycosylase
Q9V4D8
Drosophila melanogaster
1738
191423
Reaction
Hydrolyses mismatched double-stranded DNA and polynucleotides, releasing free thymine.
Other sequences found for EC No. 3.2.2.29

General information:

Sequence
show sequence in fasta format
   0 MQEESGSTPL LSSSFSYTPT VAPLVLKIAL IQAARSFAAS KYTIKVLLSL NLALSEQAIV
  60 QKAVKPICTV MASEVDASSG PEDGTVPTLM SLTPYITNLE HGNNESGKYV SGLPNNRKRQ
 120 KLSILEHNTI QNNDVDNTEV EPNMDPKSKM SDTKSNKYSE MEKHLNDNSK IVIEGTISIG
 180 NSKRKSPEKL VPYDNDCYMP PEQALVTSVE LVVPAPQTHS SNTPGRQSEE PNLSTLGESS
 240 TTPSSTIDNK LQYSTAGLYN STSSTSILAN DKIVGCANDS SNLNLRIPTK LVVTTASGDI
 300 LIDDRRASLW TPHHDESGQR QQRTGTASSD TKQEPMNVSS ELSYHHQNRH SELLLQIEKE
 360 SSGSFLQASP IPLQDNHNNA ASGQFGQTEE TSNIDSQSHN NFYAQMMQPQ HLLHNQHQQS
 420 MHEHSPRHQQ PASYSGYITH YQNPPMFGAH QSEHHQRLNQ QQQPLQHLLD CHGHLEQSTP
 480 ISQQNQHHLS QQIHQHQHQQ THQRLPLREN YHDIIMDDFH EEPSHAFKLT LSPSNTKPEN
 540 QDDGYETSAG DVLTPNSHSS STHSITPQHQ MQHSNIVLMT QNQKKSDDLQ LTKVTLSGEA
 600 HTDPNACSSN SSQGQVLASQ SHLELSEGTR CSSHASVVDP YSFMGEELHM HSPSHRHLDA
 660 VTTGPGRYGI LVSNDTPECL SREMYRHSQQ STTVLEQTDS SSCGINFKPM PKKRGRKKKL
 720 VAVNADTSQM TTPVDQQKVS AGRADCEDGG GDQAAKPKER KKHDRFNGMS EEEVIKRTIP
 780 DHLCDNLDIV IVGINPGLFA AYKGHHYAGP GNHFWKCLYL AGLTQEQMSA DEDHKLIKQG
 840 IGFTNMVARA TKGSADLTRK EIKEGSRILL EKLQRFRPKV AVFNGKLIFE VFSGKKEFHF
 900 GRQPDRVDGT DTFIWVMPSS SARCAQLPRA ADKVPFYAAL KKFRDFLNGQ IPHIDESECV
 960 FTDQRIRLCS AQQQVDIVGK INKTHQPPLG DHPSSLTVVS NCSGPIAGDA ECGIVAEESD
1020 QVQSEKMIPQ MDPTVPSSSN ATDGKSFSYT AENTPLLPVS NHNPSINENN YLSVMGSQQP
1080 LSQQPLEKKK RGRPKKIKGQ DIIDHSVGGK ASIAGQHIPS HDFNNILNLS VMSGGGTIET
1140 PKKKRGRPKK LKPAIDNIMT VKQLQHGNNN LNTTAGLSAS SMHPISMEHI AASPQSSHQM
1200 PPSLYNTPPP SHLLYTASAS PMASPALNCN YTQVHGHGTP PVGQVASVAQ GSSPVIDTQN
1260 DHLAQQKQSH HGNLGAGLDM RDHPHLGETP PPSSPNMCST VDFDPPDEHS GSQVGSRVQN
1320 KAVELDHQHP QIMEKVQYDS PVPNTEANPA HPHENYQQWL SPHPHQSNQP AQKLTHRQQH
1380 PPMHHFHQEQ TENWQRYEEQ NSNPYMVISA HHQHLSPRLG NQTHQNSSPS GHISSDVAHK
1440 SLCGLESLVD QIPAIREQDC SNIPLATVAA AAAAVESRIL SLQHQHQHPL QPHQQNQQNQ
1500 QQQLKQCKQE NSAHRESCRP TSENSNVSNS NFSVSSLAAS ASSARTDNAI YGNGETKGNN
1560 ESSHHNSCDT NIDYPIHNQS AYHHTPHLIG SALGTNVNNS EPNLHTISHP HPPHPHPHSM
1620 YVDQAHHMAH IPSVNVNSMY GPAYGSHPQH TTGEYPGTHG HYSLGGSVQT AVPTSSATLH
1680 VPSPNYPFGH HPYGHTPPQA NYPSYTHPHT HHHHSHPSHH LTVFDHLKPS DISGYGGF
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Sequence related references
Sequence Reference
Authors
Title
Journal
Volume
Pages
Year
PubMed ID
133861285
Hardeland U.,Bentele M.,Jiricny J.,Schar P.
Separating substrate recognition from base hydrolysis in human thymine DNA glycosylase by mutational analysis.
J. Biol. Chem.
275
33449-33456
2000
133861286
Adams M.D.,Celniker S.E.,Holt R.A.,Evans C.A.,Gocayne J.D.,Amanatides P.G.,Scherer S.E.,Li P.W.,Hoskins R.A.,Galle R.F.,George R.A.,Lewis S.E.,Richards S.,Ashburner M.,Henderson S.N.,Sutton G.G.,Wortman J.R.,Yandell M.D.,Zhang Q.,Chen L.X.,Brandon R.C.,Rogers Y.H.,Blazej R.G.,Champe M.,Pfeiffer B.D.,Wan K.H.,Doyle C.,Baxter E.G.,Helt G.,Nelson C.R.,Gabor G.L.,Abril J.F.,Agbayani A.,An H.J.,Andrews-Pfannkoch C.,Baldwin D.,Ballew R.M.,Basu A.,Baxendale J.,Bayraktaroglu L.,Beasley E.M.,Beeson K.Y.,Benos P.V.,Berman B.P.,Bhandari D.,Bolshakov S.,Borkova D.,Botchan M.R.,Bouck J.,Brokstein P.,Brottier P.,Burtis K.C.,Busam D.A.,Butler H.,Cadieu E.,Center A.,Chandra I.,Cherry J.M.,Cawley S.,Dahlke C.,Davenport L.B.,Davies P.,de Pablos B.,Delcher A.,Deng Z.,Mays A.D.,Dew I.,Dietz S.M.,Dodson K.,Doup L.E.,Downes M.,Dugan-Rocha S.,Dunkov B.C.,Dunn P.,Durbin K.J.,Evangelista C.C.,Ferraz C.,Ferriera S.,Fleischmann W.,Fosler C.,Gabrielian A.E.,Garg N.S.,Gelbart W.M.,Glasser K.,Glodek A.,Gong F.,Gorrell J.H.,Gu Z.,Guan P.,Harris M.,Harris N.L.,Harvey D.,Heiman T.J.,Hernandez J.R.,Houck J.,Hostin D.,Houston K.A.,Howland T.J.,Wei M.H.,Ibegwam C.,Jalali M.,Kalush F.,Karpen G.H.,Ke Z.,Kennison J.A.,Ketchum K.A.,Kimmel B.E.,Kodira C.D.,Kraft C.,Kravitz S.,Kulp D.,Lai Z.,Lasko P.,Lei Y.,Levitsky A.A.,Li J.,Li Z.,Liang Y.,Lin X.,Liu X.,Mattei B.,McIntosh T.C.,McLeod M.P.,McPherson D.,Merkulov G.,Milshina N.V.,Mobarry C.,Morris J.,Moshrefi A.,Mount S.M.,Moy M.,Murphy B.,Murphy L.,Muzny D.M.,Nelson D.L.,Nelson D.R.,Nelson K.A.,Nixon K.,Nusskern D.R.,Pacleb J.M.,Palazzolo M.,Pittman G.S.,Pan S.,Pollard J.,Puri V.,Reese M.G.,Reinert K.,Remington K.,Saunders R.D.,Scheeler F.,Shen H.,Shue B.C.,Siden-Kiamos I.,Simpson M.,Skupski M.P.,Smith T.,Spier E.,Spradling A.C.,Stapleton M.,Strong R.,Sun E.,Svirskas R.,Tector C.,Turner R.,Venter E.,Wang A.H.,Wang X.,Wang Z.Y.,Wassarman D.A.,Weinstock G.M.,Weissenbach J.,Williams S.M.,WoodageT,Worley K.C.,Wu D.,Yang S.,Yao Q.A.,Ye J.,Yeh R.F.,Zaveri J.S.,Zhan M.,Zhang G.,Zhao Q.,Zheng L.,Zheng X.H.,Zhong F.N.,Zhong W.,Zhou X.,Zhu S.,Zhu X.,Smith H.O.,Gibbs R.A.,Myers E.W.,Rubin G.M.,Venter J.C.
The genome sequence of Drosophila melanogaster.
Science
287
2185-2195
2000
133861287
Celniker S.E.,Wheeler D.A.,Kronmiller B.,Carlson J.W.,Halpern A.,Patel S.,Adams M.,Champe M.,Dugan S.P.,Frise E.,Hodgson A.,George R.A.,Hoskins R.A.,Laverty T.,Muzny D.M.,Nelson C.R.,Pacleb J.M.,Park S.,Pfeiffer B.D.,Richards S.,Sodergren E.J.,Svirskas R.,Tabor P.E.,Wan K.,Stapleton M.,Sutton G.G.,Venter C.,Weinstock G.,Scherer S.E.,Myers E.W.,Gibbs R.A.,Rubin G.M.
Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.
Genome Biol.
3
0-0
2002
133861288
Misra S.,Crosby M.A.,Mungall C.J.,Matthews B.B.,Campbell K.S.,Hradecky P.,Huang Y.,Kaminker J.S.,Millburn G.H.,Prochnik S.E.,Smith C.D.,Tupy J.L.,Whitfied E.J.,Bayraktaroglu L.,Berman B.P.,Bettencourt B.R.,Celniker S.E.,de Grey A.D.,Drysdale R.A.,Harris N.L.,Richter J.,Russo S.,Schroeder A.J.,Shu S.Q.,Stapleton M.,Yamada C.,Ashburner M.,Gelbart W.M.,Rubin G.M.,Lewis S.E.
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.
Genome Biol.
3
0-0
2002
133861289
Kaminker J.S.,Bergman C.M.,Kronmiller B.,Carlson J.,Svirskas R.,Patel S.,Frise E.,Wheeler D.A.,Lewis S.E.,Rubin G.M.,Ashburner M.,Celniker S.E.
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.
Genome Biol.
3
0-0
2002
133861290
Hoskins R.A.,Smith C.D.,Carlson J.W.,Carvalho A.B.,Halpern A.,Kaminker J.S.,Kennedy C.,Mungall C.J.,Sullivan B.A.,Sutton G.G.,Yasuhara J.C.,Wakimoto B.T.,Myers E.W.,Celniker S.E.,Rubin G.M.,Karpen G.H.
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.
Genome Biol.
3
0-0
2002
133861291
Quesneville H.,Bergman C.M.,Andrieu O.,Autard D.,Nouaud D.,Ashburner M.,Anxolabehere D.
Combined evidence annotation of transposable elements in genome sequences.
PLoS Comput. Biol.
1
166-175
2005
133861294
Smith C.D.,Shu S.,Mungall C.J.,Karpen G.H.
The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science
316
1586-1591
2007
133861295
Hoskins R.A.,Carlson J.W.,Kennedy C.,Acevedo D.,Evans-Holm M.,Frise E.,Wan K.H.,Park S.,Mendez-Lago M.,Rossi F.,Villasante A.,Dimitri P.,Karpen G.H.,Celniker S.E.
Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science
316
1625-1628
2007
133861297
Matthews B.B.,Dos Santos G.,Crosby M.A.,Emmert D.B.,St Pierre S.E.,Gramates L.S.,Zhou P.,Schroeder A.J.,Falls K.,Strelets V.,Russo S.M.,Gelbart W.M.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda)
5
1721-1736
2015
133861298
Crosby M.A.,Gramates L.S.,Dos Santos G.,Matthews B.B.,St Pierre S.E.,Zhou P.,Schroeder A.J.,Falls K.,Emmert D.B.,Russo S.M.,Gelbart W.M.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda)
5
1737-1749
2015
133861299
Hoskins R.A.,Carlson J.W.,Wan K.H.,Park S.,Mendez I.,Galle S.E.,Booth B.W.,Pfeiffer B.D.,George R.A.,Svirskas R.,Krzywinski M.,Schein J.,Accardo M.C.,Damia E.,Messina G.,Mendez-Lago M.,de Pablos B.,Demakova O.V.,Andreyeva E.N.,Boldyreva L.V.,Marra M.,Carvalho A.B.,Dimitri P.,Villasante A.,Zhimulev I.F.,Rubin G.M.,Karpen G.H.,Celniker S.E.
The Release 6 reference sequence of the Drosophila melanogaster genome.
Genome Res.
25
445-458
2015