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Literature summary extracted from
- Poly(cis-1,4-isoprene)-cleavage enzymes from natural rubber-utilizing bacteria (2020), Biosci. Biotechnol. Biochem., 84, 1089-1097 .
Molecular Weight [Da]
| EC Number | Molecular Weight [Da] | Molecular Weight Maximum [Da] | Comment | Organism |
|---|---|---|---|---|
| 1.13.11.85 | 75000 | - |
gel filtration | Chondromyces apiculatus |
Natural Substrates/ Products (Substrates)
| EC Number | Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
|---|---|---|---|---|---|---|---|
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | Corallococcus coralloides | - |
n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? |  |
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | Haliangium ochraceum | - |
n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | Rhizobacter gummiphilus | - |
n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | Myxococcus fulvus | - |
n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | Chondromyces apiculatus | - |
n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | Rhizobacter gummiphilus NS21 | - |
n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Streptomyces sp. K30 | - |
? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Rhodococcus rhodochrous | - |
? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Gordonia westfalica | - |
? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Gordonia polyisoprenivorans | - |
? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Solimonas fluminis | - |
? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Nocardia farcinica | - |
n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Nocardia farcinica E1 | - |
n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Solimonas fluminis HR-BB | - |
? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Rhodococcus rhodochrous RPK1 | - |
? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Gordonia westfalica Kb1 | - |
? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | Gordonia polyisoprenivorans VH2 | - |
? | - |
? | |
Organism
| EC Number | Organism | UniProt | Comment | Textmining |
|---|---|---|---|---|
| 1.13.11.85 | Chondromyces apiculatus | - |
- |
- |
| 1.13.11.85 | Corallococcus coralloides | - |
- |
- |
| 1.13.11.85 | Haliangium ochraceum | - |
- |
- |
| 1.13.11.85 | Myxococcus fulvus | - |
- |
- |
| 1.13.11.85 | Rhizobacter gummiphilus | - |
- |
- |
| 1.13.11.85 | Rhizobacter gummiphilus NS21 | - |
- |
- |
| 1.13.11.87 | Gordonia polyisoprenivorans | B2KPH0 | - |
- |
| 1.13.11.87 | Gordonia polyisoprenivorans VH2 | B2KPH0 | - |
- |
| 1.13.11.87 | Gordonia westfalica | B2KPH1 | - |
- |
| 1.13.11.87 | Gordonia westfalica Kb1 | B2KPH1 | - |
- |
| 1.13.11.87 | Nocardia farcinica | Q1HUS3 | - |
- |
| 1.13.11.87 | Nocardia farcinica E1 | Q1HUS3 | - |
- |
| 1.13.11.87 | Rhodococcus rhodochrous | A0A165QBG6 | - |
- |
| 1.13.11.87 | Rhodococcus rhodochrous RPK1 | A0A165QBG6 | - |
- |
| 1.13.11.87 | Solimonas fluminis | - |
- |
- |
| 1.13.11.87 | Solimonas fluminis HR-BB | - |
- |
- |
| 1.13.11.87 | Streptomyces sp. K30 | Q3L8N0 | - |
- |
Substrates and Products (Substrate)
| EC Number | Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|---|
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | - |
Corallococcus coralloides | n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | - |
Haliangium ochraceum | n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | - |
Rhizobacter gummiphilus | n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | - |
Myxococcus fulvus | n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | - |
Chondromyces apiculatus | n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.85 | cis-1,4-polyisoprene + n O2 | - |
Rhizobacter gummiphilus NS21 | n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Streptomyces sp. K30 | ? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Rhodococcus rhodochrous | ? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Gordonia westfalica | ? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Gordonia polyisoprenivorans | ? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Solimonas fluminis | ? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Solimonas fluminis HR-BB | ? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Rhodococcus rhodochrous RPK1 | ? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Gordonia westfalica Kb1 | ? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Gordonia polyisoprenivorans VH2 | ? | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Nocardia farcinica | n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
| 1.13.11.87 | cis-1,4-polyisoprene + n O2 | - |
Nocardia farcinica E1 | n (4Z,8Z)-4,8-dimethyl-12-oxotrideca-4,8-dienal | - |
? | |
Synonyms
| EC Number | Synonyms | Comment | Organism |
|---|---|---|---|
| 1.13.11.85 | poly(cis-1,4-isoprene)-cleavage enzyme | - |
Corallococcus coralloides |
| 1.13.11.85 | poly(cis-1,4-isoprene)-cleavage enzyme | - |
Haliangium ochraceum |
| 1.13.11.85 | poly(cis-1,4-isoprene)-cleavage enzyme | - |
Rhizobacter gummiphilus |
| 1.13.11.85 | poly(cis-1,4-isoprene)-cleavage enzyme | - |
Myxococcus fulvus |
| 1.13.11.85 | poly(cis-1,4-isoprene)-cleavage enzyme | - |
Chondromyces apiculatus |
| 1.13.11.85 | roxA | - |
Corallococcus coralloides |
| 1.13.11.85 | roxA | - |
Haliangium ochraceum |
| 1.13.11.85 | roxA | - |
Rhizobacter gummiphilus |
| 1.13.11.85 | roxA | - |
Myxococcus fulvus |
| 1.13.11.85 | roxA | - |
Chondromyces apiculatus |
| 1.13.11.85 | rubber oxygenase | - |
Corallococcus coralloides |
| 1.13.11.85 | rubber oxygenase | - |
Haliangium ochraceum |
| 1.13.11.85 | rubber oxygenase | - |
Rhizobacter gummiphilus |
| 1.13.11.85 | rubber oxygenase | - |
Myxococcus fulvus |
| 1.13.11.85 | rubber oxygenase | - |
Chondromyces apiculatus |
| 1.13.11.87 | latex-clearing protein | - |
Streptomyces sp. K30 |
| 1.13.11.87 | latex-clearing protein | - |
Rhodococcus rhodochrous |
| 1.13.11.87 | latex-clearing protein | - |
Nocardia farcinica |
| 1.13.11.87 | latex-clearing protein | - |
Gordonia polyisoprenivorans |
| 1.13.11.87 | latex-clearing protein | - |
Solimonas fluminis |
| 1.13.11.87 | Lcp | - |
Streptomyces sp. K30 |
| 1.13.11.87 | Lcp | - |
Rhodococcus rhodochrous |
| 1.13.11.87 | Lcp | - |
Nocardia farcinica |
| 1.13.11.87 | Lcp | - |
Gordonia polyisoprenivorans |
| 1.13.11.87 | Lcp | - |
Solimonas fluminis |
Temperature Stability [°C]
| EC Number | Temperature Stability Minimum [°C] | Temperature Stability Maximum [°C] | Comment | Organism |
|---|---|---|---|---|
| 1.13.11.85 | 54.3 | - |
the enzyme denatures at a temperature of 54.3°C | Chondromyces apiculatus |
Cofactor
| EC Number | Cofactor | Comment | Organism | Structure |
|---|---|---|---|---|
| 1.13.11.85 | heme | - |
Corallococcus coralloides | |
| 1.13.11.85 | heme | - |
Haliangium ochraceum | |
| 1.13.11.85 | heme | - |
Rhizobacter gummiphilus | |
| 1.13.11.85 | heme | - |
Myxococcus fulvus | |
| 1.13.11.85 | heme | - |
Chondromyces apiculatus | |
| 1.13.11.85 | heme | the enzyme possesses 2 heme-binding regions | Corallococcus coralloides | |
| 1.13.11.85 | heme | the enzyme possesses 2 heme-binding regions | Chondromyces apiculatus | |
| 1.13.11.87 | heme | - |
Streptomyces sp. K30 | |
| 1.13.11.87 | heme | - |
Rhodococcus rhodochrous | |
| 1.13.11.87 | heme | - |
Nocardia farcinica | |
| 1.13.11.87 | heme | - |
Gordonia westfalica | |
| 1.13.11.87 | heme | - |
Gordonia polyisoprenivorans | |
| 1.13.11.87 | heme | - |
Solimonas fluminis | |
General Information
| EC Number | General Information | Comment | Organism |
|---|---|---|---|
| 1.13.11.85 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Corallococcus coralloides |
| 1.13.11.85 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Haliangium ochraceum |
| 1.13.11.85 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Rhizobacter gummiphilus |
| 1.13.11.85 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Myxococcus fulvus |
| 1.13.11.85 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Chondromyces apiculatus |
| 1.13.11.87 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Streptomyces sp. K30 |
| 1.13.11.87 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Rhodococcus rhodochrous |
| 1.13.11.87 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Nocardia farcinica |
| 1.13.11.87 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Gordonia westfalica |
| 1.13.11.87 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Gordonia polyisoprenivorans |
| 1.13.11.87 | metabolism | the enzyme is essential for the poly(cis-1,4-isoprene) rubber utilization of its host strain | Solimonas fluminis |
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