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Literature summary extracted from

  • Rajulapati, V.; Sharma, K.; Dhillon, A.; Goyal, A.
    SAXS and homology modelling based structure characterization of pectin methylesterase a family 8 carbohydrate esterase from Clostridium thermocellum ATCC 27405 (2018), Arch. Biochem. Biophys., 641, 39-49 .
    View publication on PubMed

Cloned(Commentary)

EC Number Cloned (Comment) Organism
3.1.1.11 gene Cthe_2949, sequence comparisons and phylogenetic analysis Acetivibrio thermocellus

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
3.1.1.11 pectin + n H2O Acetivibrio thermocellus
-
 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O Acetivibrio thermocellus DSM 1237
-
 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O Acetivibrio thermocellus NBRC 103400
-
 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O Acetivibrio thermocellus ATCC 27405
-
 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O Acetivibrio thermocellus VPI 7372
-
 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O Acetivibrio thermocellus NCIMB 10682
-
 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O Acetivibrio thermocellus NRRL B-4536
-
 n methanol + pectate
-
 ?

Organism

EC Number Organism UniProt Comment Textmining
3.1.1.11 Acetivibrio thermocellus A3DJL8
-
-
3.1.1.11 Acetivibrio thermocellus ATCC 27405 A3DJL8
-
-
3.1.1.11 Acetivibrio thermocellus DSM 1237 A3DJL8
-
-
3.1.1.11 Acetivibrio thermocellus NBRC 103400 A3DJL8
-
-
3.1.1.11 Acetivibrio thermocellus NCIMB 10682 A3DJL8
-
-
3.1.1.11 Acetivibrio thermocellus NRRL B-4536 A3DJL8
-
-
3.1.1.11 Acetivibrio thermocellus VPI 7372 A3DJL8
-
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
3.1.1.11 pectin + n H2O
-
 Acetivibrio thermocellus n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O
-
 Acetivibrio thermocellus DSM 1237 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O
-
 Acetivibrio thermocellus NBRC 103400 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O
-
 Acetivibrio thermocellus ATCC 27405 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O
-
 Acetivibrio thermocellus VPI 7372 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O
-
 Acetivibrio thermocellus NCIMB 10682 n methanol + pectate
-
 ?
3.1.1.11 pectin + n H2O
-
 Acetivibrio thermocellus NRRL B-4536 n methanol + pectate
-
 ?

Subunits

EC Number Subunits Comment Organism
3.1.1.11 More analysis of secondary structure of CtPME shows alpha-helices (3.1%), beta-sheets (40.1%) and random coils (56.9%). Three-dimensional enzyme structure analysis and structure comparisons, overview Acetivibrio thermocellus

Synonyms

EC Number Synonyms Comment Organism
3.1.1.11 Cthe_2949
-
 Acetivibrio thermocellus
3.1.1.11 CtPME
-
 Acetivibrio thermocellus
3.1.1.11 PME
-
 Acetivibrio thermocellus
3.1.1.11 psectin methylesterase
-
 Acetivibrio thermocellus

General Information

EC Number General Information Comment Organism
3.1.1.11 evolution the enzyme belongs to the family 8 of carbohydrate esterases (CE8) of the pectin methylesterase superfamily Acetivibrio thermocellus
3.1.1.11 additional information analysis of the conserved and semi-conserved amino acid residues, homology modelling of CtPME structure reveals a characteristic right handed parallel alpha-helices, structure comparisons, overview. Molecular dynamic simulation of CtPME modelled structure, docking study of CtPME. Active site and ligand binding structures Acetivibrio thermocellus