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Literature summary extracted from

  • Bisterfeld, C.; Küberl, I.; Dick, M.; Pietruszka, J.
    A fluorogenic screening for enantio- and diastereoselectivity of 2-deoxy-D-ribose-5-phosphate aldolases (2016), Synlett, 27, 11-16 .
No PubMed abstract available

Cloned(Commentary)

EC Number Cloned (Comment) Organism
4.1.2.4 expression in Escherichia coli BL21(DE3) Escherichia coli
4.1.2.4 expression in Escherichia coli BL21(DE3) Rhodococcus erythropolis
4.1.2.4 expression in Escherichia coli BL21(DE3) Thermotoga maritima
4.1.2.4 expression in Escherichia coli BL21(DE3) Pyrobaculum aerophilum
4.1.2.4 expression in Escherichia coli BL21(DE3) Colwellia psychrerythraea
4.1.2.4 expression in Escherichia coli BL21(DE3) Shewanella halifaxensis

Organism

EC Number Organism UniProt Comment Textmining
4.1.2.4 Colwellia psychrerythraea
-
-
-
4.1.2.4 Escherichia coli
-
-
-
4.1.2.4 Pyrobaculum aerophilum
-
-
-
4.1.2.4 Rhodococcus erythropolis
-
-
-
4.1.2.4 Shewanella halifaxensis
-
-
-
4.1.2.4 Thermotoga maritima
-
-
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
4.1.2.4 2-deoxy-D-ribose
-
 Escherichia coli D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 2-deoxy-D-ribose
-
 Rhodococcus erythropolis D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 2-deoxy-D-ribose
-
 Pyrobaculum aerophilum D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 2-deoxy-D-ribose
-
 Colwellia psychrerythraea D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 2-deoxy-D-ribose
-
 Shewanella halifaxensis D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 2-deoxy-D-ribose 5-phosphate
-
 Escherichia coli D-glyceraldehyde 3-phosphate + acetaldehyde
-
 ?
4.1.2.4 2-deoxy-D-ribose 5-phosphate
-
 Rhodococcus erythropolis D-glyceraldehyde 3-phosphate + acetaldehyde
-
 ?
4.1.2.4 2-deoxy-D-ribose 5-phosphate
-
 Thermotoga maritima D-glyceraldehyde 3-phosphate + acetaldehyde
-
 ?
4.1.2.4 2-deoxy-D-ribose 5-phosphate
-
 Pyrobaculum aerophilum D-glyceraldehyde 3-phosphate + acetaldehyde
-
 ?
4.1.2.4 2-deoxy-D-ribose 5-phosphate
-
 Colwellia psychrerythraea D-glyceraldehyde 3-phosphate + acetaldehyde
-
 ?
4.1.2.4 2-deoxy-D-ribose 5-phosphate
-
 Shewanella halifaxensis D-glyceraldehyde 3-phosphate + acetaldehyde
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose
-
 Escherichia coli 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose
-
 Rhodococcus erythropolis 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose
-
 Shewanella halifaxensis 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose low activity Thermotoga maritima 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose low activity Pyrobaculum aerophilum 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose higher activity with 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose than with 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose Colwellia psychrerythraea 3-O-(4'-methylumbelliferyl)-D-glyceraldehyde + acetaldehyde
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose low activity Escherichia coli ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose low activity Rhodococcus erythropolis ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose low activity Thermotoga maritima ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose low activity Pyrobaculum aerophilum ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose low activity Colwellia psychrerythraea ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-D-xylose low activity Shewanella halifaxensis ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose
-
 Shewanella halifaxensis ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose low activity Escherichia coli ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose low activity Rhodococcus erythropolis ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose low activity Thermotoga maritima ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose low activity Pyrobaculum aerophilum ?
-
 ?
4.1.2.4 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose higher activity with 5-O-(4'-methylumbelliferyl)-2-deoxy-L-ribose than with 5-O-(4'-methylumbelliferyl)-2-deoxy-D-ribose Colwellia psychrerythraea ?
-
 ?

Synonyms

EC Number Synonyms Comment Organism
4.1.2.4 2-deoxy-D-ribose-5-phosphate aldolase
-
 Escherichia coli
4.1.2.4 2-deoxy-D-ribose-5-phosphate aldolase
-
 Rhodococcus erythropolis
4.1.2.4 2-deoxy-D-ribose-5-phosphate aldolase
-
 Thermotoga maritima
4.1.2.4 2-deoxy-D-ribose-5-phosphate aldolase
-
 Pyrobaculum aerophilum
4.1.2.4 2-deoxy-D-ribose-5-phosphate aldolase
-
 Colwellia psychrerythraea
4.1.2.4 2-deoxy-D-ribose-5-phosphate aldolase
-
 Shewanella halifaxensis
4.1.2.4 DERA
-
 Escherichia coli
4.1.2.4 DERA
-
 Rhodococcus erythropolis
4.1.2.4 DERA
-
 Thermotoga maritima
4.1.2.4 DERA
-
 Pyrobaculum aerophilum
4.1.2.4 DERA
-
 Colwellia psychrerythraea
4.1.2.4 DERA
-
 Shewanella halifaxensis