Cloning, nucleotide sequence, and overexpression of the L-rhamnose isomerase gene from Pseudomonas stutzeri in Escherichia coli

Leang, K.; Takada, G.; Ishimura, A.; Okita, M.; Izumori, K.; Appl. Environ. Microbiol. 70, 3298-3304 (2004)

Data extracted from this reference:

KM Value [mM]

KM Value Maximum [mM]

Substrate

Commentary

Organism

Structure

11.9

-

L-rhamnose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

38.5

-

D-ribose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

42

-

D-allose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

55

-

L-rhamnose

50°C, pH 9.0, intrinsic enzyme from Pseudomonas stutzeri

Pseudomonas stutzeri

55.5

-

L-Mannose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

61.7

-

L-Lyxose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

71

-

D-altrose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

127.4

-

D-arabinose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

203

-

L-Xylose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

250

-

D-xylose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

564

-

D-glucose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

Substrates

Commentary Substrates

Literature (Substrates)

Organism

Products

Commentary (Products)

Literature (Products)

Organism (Products)

Reversibility

Substrate Product ID

D-Allose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

D-altrose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

D-Arabinose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

D-glucose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

D-Ribose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

D-Xylose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

L-lyxose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

L-mannose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

L-Rhamnose

-

660751

Pseudomonas stutzeri

L-Rhamnulose

-

-

-

?

L-xylose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

KM Value [mM]

KM Value Maximum [mM]

Substrate

Commentary

Organism

Structure

11.9

-

L-rhamnose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

38.5

-

D-ribose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

42

-

D-allose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

55

-

L-rhamnose

50°C, pH 9.0, intrinsic enzyme from Pseudomonas stutzeri

Pseudomonas stutzeri

55.5

-

L-Mannose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

61.7

-

L-Lyxose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

71

-

D-altrose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

127.4

-

D-arabinose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

203

-

L-Xylose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

250

-

D-xylose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

564

-

D-glucose

50°C, pH 9.0, recombinant enzyme

Pseudomonas stutzeri

Substrates

Commentary Substrates

Literature (Substrates)

Organism

Products

Commentary (Products)

Literature (Products)

Organism (Products)

Reversibility

ID

D-Allose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

D-altrose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

D-Arabinose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

D-glucose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

D-Ribose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

D-Xylose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

L-lyxose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

L-mannose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

L-Rhamnose

-

660751

Pseudomonas stutzeri

L-Rhamnulose

-

-

-

?

L-xylose

-

660751

Pseudomonas stutzeri

?

-

-

-

?

No.

1st author

Pub Med

title

organims

journal

volume

pages

year

Activating Compound

Application

Cloned(Commentary)

Crystallization (Commentary)

Engineering

General Stability

Inhibitors

KM Value [mM]

Localization

Metals/Ions

Molecular Weight [Da]

Natural Substrates/ Products (Substrates)

Organic Solvent Stability

Organism

Oxidation Stability

Posttranslational Modification

Purification (Commentary)

Reaction

Renatured (Commentary)

Source Tissue

Specific Activity [micromol/min/mg]

Storage Stability

Substrates and Products (Substrate)

Subunits

Synonyms

Temperature Optimum [°C]

Temperature Range [°C]

Temperature Stability [°C]

Turnover Number [1/s]

pH Optimum

pH Range

pH Stability

Cofactor

Ki Value [mM]

pI Value

IC50 Value

Activating Compound (protein specific)

Application (protein specific)

Cloned(Commentary) (protein specific)

Cofactor (protein specific)

Crystallization (Commentary) (protein specific)

Engineering (protein specific)

General Stability (protein specific)

IC50 Value (protein specific)

Inhibitors (protein specific)

Ki Value [mM] (protein specific)

KM Value [mM] (protein specific)

Localization (protein specific)

Metals/Ions (protein specific)

Molecular Weight [Da] (protein specific)

Natural Substrates/ Products (Substrates) (protein specific)

Organic Solvent Stability (protein specific)

Oxidation Stability (protein specific)

Posttranslational Modification (protein specific)

Purification (Commentary) (protein specific)

Renatured (Commentary) (protein specific)

Source Tissue (protein specific)

Specific Activity [micromol/min/mg] (protein specific)

Storage Stability (protein specific)

Substrates and Products (Substrate) (protein specific)

Subunits (protein specific)

Temperature Optimum [°C] (protein specific)

Temperature Range [°C] (protein specific)

Temperature Stability [°C] (protein specific)

Turnover Number [1/s] (protein specific)

pH Optimum (protein specific)

pH Range (protein specific)

pH Stability (protein specific)

pI Value (protein specific)

Expression

General Information

General Information (protein specific)

Expression (protein specific)

KCat/KM [mM/s]

KCat/KM [mM/s] (protein specific)

747394

Seo

Characterization of L-rhamnos ...

Thermoclostridium stercorarium subsp. stercorarium, Thermoclostridium stercorarium subsp. stercorarium DSM 8532

Biotechnol. Lett.

40

325-334

2018

-

1

-

-

-

-

-

-

-

1

1

-

-

7

-

-

-

-

-

-

-

-

13

1

-

1

-

3

-

1

-

-

-

-

-

-

-

1

-

-

-

-

-

-

-

-

-

-

1

1

-

-

-

-

-

-

-

-

-

13

1

1

-

3

-

1

-

-

-

-

-

-

-

-

-

748497

Chen

Characterization of a thermos ...

Caldicellulosiruptor obsidiansis, Caldicellulosiruptor obsidiansis OB47

J. Sci. Food Agric.

98

2184-2193

2018

6

-

-

-

-

-

-

-

-

1

-

-

-

5

-

-

-

-

-

-

4

-

8

1

1

1

-

3

-

1

-

-

-

-

-

-

6

-

-

-

-

-

-

-

-

-

-

-

1

-

-

-

-

-

-

-

-

4

-

8

1

1

-

3

-

1

-

-

-

-

-

-

-

-

-

749202

Xu

-

Characterization of a novel t ...

Thermobacillus composti, Thermobacillus composti DSM 18247

Process Biochem.

53

153-161

2017

-

-

1

-

-

-

-

4

-

4

-

-

-

2

-

-

-

-

-

-

-

-

8

1

-

1

1

-

-

1

2

-

-

-

-

-

-

-

1

-

-

-

-

-

-

-

4

-

4

-

-

-

-

-

-

-

-

-

-

8

1

1

1

-

-

1

2

-

-

-

-

-

-

4

4

747820

Bai

-

Characteristics and kinetic p ...

Bacillus subtilis, Bacillus subtilis 168

Food Sci. Technol. Res.

21

13-22

2015

-

-

1

-

-

-

8

4

-

3

-

-

-

2

-

-

-

-

-

-

-

-

10

1

-

1

-

1

4

-

-

-

-

-

-

-

-

-

1

-

-

-

-

-

8

-

4

-

3

-

-

-

-

-

-

-

-

-

-

10

1

1

-

1

4

-

-

-

-

-

-

-

-

4

4

747355

Park

-

Characterization of a recombi ...

Bacillus subtilis, Bacillus subtilis ATCC 23857

Biotechnol. Bioprocess Eng.

19

18-25

2014

-

1

1

-

-

-

-

3

-

1

1

-

-

2

-

-

-

-

-

-

4

-

10

1

1

1

-

1

3

1

-

-

-

-

-

-

-

1

1

-

-

-

-

-

-

-

3

-

1

1

-

-

-

-

-

-

-

4

-

10

1

1

-

1

3

1

-

-

-

-

-

-

-

3

3

727230

Kim

Characterization of a recombin ...

Dictyoglomus turgidum, Dictyoglomus turgidum DSM 6724

Biotechnol. Lett.

35

259-264

2013

-

-

1

-

-

-

-

7

-

1

3

2

-

5

-

-

1

-

-

-

-

-

12

2

-

1

-

1

7

1

-

1

-

-

-

-

-

-

1

-

-

-

-

-

-

-

7

-

1

3

2

-

-

-

1

-

-

-

-

12

2

1

-

1

7

1

-

1

-

-

-

-

-

7

7

727537

Yoshida

Structure of L-rhamnose isomer ...

Pseudomonas stutzeri

FEBS Open Bio

3

35-40

2013

-

-

-

1

2

-

-

4

-

-

-

1

-

1

-

-

1

-

-

-

-

-

2

-

2

-

-

-

4

-

-

-

-

-

-

-

-

-

-

-

1

2

-

-

-

-

4

-

-

-

1

-

-

-

1

-

-

-

-

2

-

-

-

-

4

-

-

-

-

-

-

-

-

4

4

713898

Prabhu

Cloning and characterization o ...

Alkalihalobacillus halodurans, Alkalihalobacillus halodurans ATCC BAA-125

Appl. Microbiol. Biotechnol.

89

635-644

2011

-

-

1

-

-

-

-

3

-

5

3

-

-

10

-

-

1

-

-

-

-

-

10

2

1

1

-

1

3

1

1

-

-

-

1

-

-

-

1

-

-

-

-

-

-

-

3

-

5

3

-

-

-

-

1

-

-

-

-

10

2

1

-

1

3

1

1

-

1

-

-

-

-

1

1

714530

Takata

Characterization of Mesorhizob ...

Mesorhizobium loti, Mesorhizobium loti Tono

Biosci. Biotechnol. Biochem.

75

1006-1009

2011

-

-

1

-

-

-

1

6

-

1

1

-

-

10

-

-

1

-

-

-

-

-

27

1

1

1

-

2

6

1

-

1

-

-

-

-

-

-

1

-

-

-

-

-

1

-

6

-

1

1

-

-

-

-

1

-

-

-

-

27

1

1

-

2

6

1

-

1

-

-

-

-

-

6

6

727653

Lin

Characterization of a thermoph ...

Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor saccharolyticus ATCC 43494

J. Agric. Food Chem.

59

8702-8708

2011

-

-

1

-

-

-

-

5

-

3

4

2

-

13

-

-

1

-

-

-

2

-

10

3

1

1

-

1

5

1

-

1

-

-

-

-

-

-

1

-

-

-

-

-

-

-

5

-

3

4

2

-

-

-

1

-

-

2

-

10

3

1

-

1

5

1

-

1

-

-

-

-

-

5

5

703677

Yoshida

Catalytic reaction mechanism o ...

Pseudomonas stutzeri

FEBS J.

277

1045-1057

2010

-

1

1

1

2

-

-

-

-

4

-

1

-

6

-

-

1

-

-

-

-

-

2

1

1

-

-

-

-

-

-

-

-

-

-

-

-

1

1

-

1

2

-

-

-

-

-

-

4

-

1

-

-

-

1

-

-

-

-

2

1

-

-

-

-

-

-

-

-

-

-

-

-

-

-

713643

Doan

Crystallization and preliminar ...

Alkalihalobacillus halodurans, Alkalihalobacillus halodurans ATCC BAA-125

Acta Crystallogr. Sect. F

66

677-680

2010

-

-

1

1

-

-

-

-

-

-

1

-

-

9

-

-

1

-

-

-

-

-

2

1

1

-

-

-

-

-

-

-

-

-

-

-

-

-

1

-

1

-

-

-

-

-

-

-

-

1

-

-

-

-

1

-

-

-

-

2

1

-

-

-

-

-

-

-

-

-

-

-

-

-

-

714573

Park

Characterization of a recombin ...

Thermotoga maritima, Thermotoga maritima ATCC 43589

Biotechnol. Lett.

32

1947-1953

2010

-

-

1

-

-

-

-

5

-

1

3

-

-

4

-

-

1

-

-

-

11

-

14

2

1

1

-

1

5

-

1

-

-

-

-

-

-

-

1

-

-

-

-

-

-

-

5

-

1

3

-

-

-

-

1

-

-

11

-

14

2

1

-

1

5

-

1

-

-

-

-

-

-

5

5

715213

Lin

Characterization of a thermoph ...

Thermoanaerobacterium saccharolyticum, Thermoanaerobacterium saccharolyticum NTOU1

J. Agric. Food Chem.

58

10431-10436

2010

-

1

1

-

-

-

-

5

-

7

2

-

-

13

-

-

1

-

-

-

2

-

10

2

1

1

-

1

5

1

-

1

-

-

-

-

-

1

1

-

-

-

-

-

-

-

5

-

7

2

-

-

-

-

1

-

-

2

-

10

2

1

-

1

5

1

-

1

-

-

-

-

-

5

5

716819

Yoshida

Elucidation of the role of Ser ...

Pseudomonas stutzeri

Protein Eng. Des. Sel.

23

919-927

2010

-

-

-

1

4

-

-

15

-

-

-

-

-

14

-

-

1

-

-

-

-

-

4

-

1

-

-

-

15

-

-

-

-

-

-

-

-

-

-

-

1

4

-

-

-

-

15

-

-

-

-

-

-

-

1

-

-

-

-

4

-

-

-

-

15

-

-

-

-

-

-

-

-

15

15

705332

Wu

Broad substrate specificity an ...

Pseudomonas stutzeri

J. Phys. Chem. A

113

11595-11603

2009

-

1

-

-

-

-

-

-

-

3

-

1

-

9

-

-

-

-

-

-

-

-

5

-

2

-

-

-

-

-

-

-

-

-

-

-

-

1

-

-

-

-

-

-

-

-

-

-

3

-

1

-

-

-

-

-

-

-

-

5

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

677768

Poonperm

Cloning, sequencing, overexpre ...

Aeribacillus pallidus

Appl. Microbiol. Biotechnol.

76

1297-1307

2007

-

-

1

-

-

-

-

5

-

2

2

2

-

1

-

-

1

-

-

-

6

-

9

1

1

1

1

2

5

1

-

1

-

-

-

-

-

-

1

-

-

-

-

-

-

-

5

-

2

2

2

-

-

-

1

-

-

6

-

9

1

1

1

2

5

1

-

1

-

-

-

-

-

-

-

681406

Yoshida

The structures of L-rhamnose i ...

Pseudomonas stutzeri

J. Mol. Biol.

365

1505-1516

2007

-

-

-

1

-

-

-

-

-

-

-

2

-

9

-

-

-

-

-

-

-

-

3

1

1

-

-

-

-

-

-

-

-

-

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-

-

-

-

-

1

-

-

-

-

-

-

-

-

-

2

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-

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-

3

1

-

-

-

-

-

-

-

-

-

-

-

-

-

-

677350

Yoshida

Crystallization and preliminar ...

Pseudomonas stutzeri

Acta Crystallogr. Sect. F

62

550-552

2006

-

-

1

1

-

-

-

-

-

-

2

1

-

6

-

-

1

-

-

-

-

-

3

1

2

-

-

-

-

-

-

-

-

-

-

-

-

-

1

-

1

-

-

-

-

-

-

-

-

2

1

-

-

-

1

-

-

-

-

3

1

-

-

-

-

-

-

-

-

-

-

-

-

-

-

680947

Menavuvu

Efficient biosynthesis of D-al ...

Pseudomonas stutzeri

J. Biosci. Bioeng.

101

340-345

2006

-

1

-

-

1

1

-

-

-

-

-

2

-

1

-

-

-

-

-

-

-

-

3

-

-

2

-

1

-

1

-

-

-

-

-

-

-

1

-

-

-

1

1

-

-

-

-

-

-

-

2

-

-

-

-

-

-

-

-

3

-

2

-

1

-

1

-

-

-

-

-

-

-

-

-

661610

Granstroem

-

L-Xylose and L-lyxose producti ...

Pseudomonas stutzeri

Enzyme Microb. Technol.

36

976-981

2005

-

1

-

-

-

-

-

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Noltmann

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Aldose-ketose isomerases ...

Klebsiella aerogenes, Escherichia coli, Lactiplantibacillus plantarum, Yersinia pestis, Escherichia coli B / ATCC 11303

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L-Rhamnose isomerase ...

Escherichia coli, Lactiplantibacillus plantarum, Yersinia pestis

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