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Literature summary for 3.1.21.4 extracted from
- Type II restriction-modification systems (1988), Trends Genet., 4, 314-318.
Cloned(Commentary)
| Cloned (Comment) | Organism |
|---|---|
| cloning of the complete restriction -modification system in Escherichia coli | Bacillus subtilis |
| cloning of the complete restriction-modification system in Escherichia coli | Bacillus amyloliquefaciens |
| cloning of the complete restriction-modification system in Escherichia coli | Desulfovibrio desulfuricans |
| cloning of the complete restriction-modification system in Escherichia coli | Dolichospermum flos-aquae |
| cloning of the complete restriction-modification system in Escherichia coli | Escherichia coli |
| cloning of the complete restriction-modification system in Escherichia coli | Haemophilus aegyptius |
| cloning of the complete restriction-modification system in Escherichia coli | Haemophilus haemolyticus |
| cloning of the complete restriction-modification system in Escherichia coli | Haemophilus influenzae |
| cloning of the complete restriction-modification system in Escherichia coli | Herpetosiphon aurantiacus |
| cloning of the complete restriction-modification system in Escherichia coli | Methanothermobacter wolfeii |
| cloning of the complete restriction-modification system in Escherichia coli | Planomicrobium okeanokoites |
| cloning of the complete restriction-modification system in Escherichia coli | Proteus vulgaris |
| cloning of the complete restriction-modification system in Escherichia coli | Providencia stuartii |
| cloning of the complete restriction-modification system in Escherichia coli | Streptococcus pneumoniae |
| cloning of the complete restriction-modification system in Escherichia coli | Streptomyces albus |
| cloning of the complete restriction-modification system in Escherichia coli | Thermus aquaticus |
| cloning of the complete restriction-modification system in Escherichia coli | Trichormus variabilis |
| cloning of the complete restriction-modification system in Escherichia coli | Xanthomonas campestris pv. badrii |
Natural Substrates/ Products (Substrates)
| Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| DNA + H2O | Bacillus subtilis | - |
? | - |
? |  |
| DNA + H2O | Haemophilus influenzae | sequence-specific endonucleolytic digestion of infecting DNA | ? | - |
? | |
| DNA + H2O | Escherichia coli | sequence-specific endonucleolytic digestion of infecting DNA | ? | - |
? | |
| DNA + H2O | Providencia stuartii | sequence-specific endonucleolytic digestion of infecting DNA | ? | - |
? | |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Bacillus amyloliquefaciens | - |
enzyme BamHI | - |
| Bacillus subtilis | - |
enzyme BsuRI | - |
| Desulfovibrio desulfuricans | - |
enzyme DdeI | - |
| Dolichospermum flos-aquae | - |
- |
- |
| Escherichia coli | - |
EcoRII | - |
| Escherichia coli | - |
EcoRV | - |
| Escherichia coli | - |
EcoRI | - |
| Haemophilus aegyptius | - |
enzyme HaeII | - |
| Haemophilus haemolyticus | - |
enzyme HhaII | - |
| Haemophilus haemolyticus | - |
enzyme HhaI | - |
| Haemophilus influenzae | - |
enzyme HindIII | - |
| Herpetosiphon aurantiacus | - |
enzyme HgiAI | - |
| Methanothermobacter wolfeii | - |
enzyme MwoI | - |
| Planomicrobium okeanokoites | - |
enzyme FokI | - |
| Proteus vulgaris | - |
enzyme PvuII | - |
| Providencia stuartii | - |
enzyme PstI | - |
| Streptococcus pneumoniae | - |
enzyme Dpn II | - |
| Streptococcus pneumoniae | - |
enzyme DpnI | - |
| Streptomyces albus | - |
enzyme SalI | - |
| Thermus aquaticus | - |
enzymes TaqI | - |
| Trichormus variabilis | - |
- |
- |
| Xanthomonas campestris pv. badrii | - |
enzyme XbaI | - |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| DNA + H2O | - |
Haemophilus influenzae | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Thermus aquaticus | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Bacillus subtilis | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Escherichia coli | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Proteus vulgaris | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Bacillus amyloliquefaciens | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Dolichospermum flos-aquae | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Streptomyces albus | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Desulfovibrio desulfuricans | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Trichormus variabilis | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Methanothermobacter wolfeii | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Haemophilus aegyptius | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Streptococcus pneumoniae | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Providencia stuartii | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Xanthomonas campestris pv. badrii | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Planomicrobium okeanokoites | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Herpetosiphon aurantiacus | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Haemophilus haemolyticus | double-stranded DNA fragments with terminal 5'-phosphates | - |
? | |
| DNA + H2O | - |
Bacillus subtilis | ? | - |
? | |
| DNA + H2O | sequence-specific endonucleolytic digestion of infecting DNA | Haemophilus influenzae | ? | - |
? | |
| DNA + H2O | sequence-specific endonucleolytic digestion of infecting DNA | Escherichia coli | ? | - |
? | |
| DNA + H2O | sequence-specific endonucleolytic digestion of infecting DNA | Providencia stuartii | ? | - |
? | |
| additional information | restriction endonuclease activity and modification methylase activity occur as separate proteins | Haemophilus influenzae | ? | - |
? | |
| additional information | restriction endonuclease activity and modification methylase activity occur as separate proteins | Escherichia coli | ? | - |
? | |
| additional information | restriction endonuclease activity and modification methylase activity occur as separate proteins | Providencia stuartii | ? | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| AflII | - |
Dolichospermum flos-aquae |
| DpnI | - |
Streptococcus pneumoniae |
| DpnII | - |
Streptococcus pneumoniae |
| EcoRI | - |
Escherichia coli |
| EcoRII | - |
Escherichia coli |
| EcoRV | - |
Escherichia coli |
| HindIII | - |
Haemophilus influenzae |
| PstI | - |
Providencia stuartii |
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