BRENDA - Enzyme Database
show all sequences of 1.9.6.1

Purification and characterization of the periplasmic nitrate reductase from Thiosphaera pantotropha

Berks, B.C.; Richardson, D.J.; Robinson, C.; Reilly, A.; Aplin, R.T.; Ferguson, S.J.; Eur. J. Biochem. 220, 117-124 (1994)

Data extracted from this reference:

Inhibitors
Inhibitors
Commentary
Organism
Structure
additional information
insensitive to inhibition by azide
Paracoccus pantotrophus
Localization
Localization
Commentary
Organism
GeneOntology No.
Textmining
periplasm
-
Paracoccus pantotrophus
-
-
Metals/Ions
Metals/Ions
Commentary
Organism
Structure
Fe
contains 2.7 mol iron (of which 1.4 mol is presumably non-haem iron) per mol of protein (assuming a 110000 Da molecular mass)
Paracoccus pantotrophus
Mo
contains molybdenum, 0.9 mol molybdenum: 1 mol protein (assuminga 110000 Da molecular mass)
Paracoccus pantotrophus
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
16000
-
1 * 93000 + 1 * 16000, SDS-PAGE
Paracoccus pantotrophus
93000
-
1 * 93000 + 1 * 16000, SDS-PAGE
Paracoccus pantotrophus
110000
-
gel filtration
Paracoccus pantotrophus
Organism
Organism
UniProt
Commentary
Textmining
Paracoccus pantotrophus
-
mutant strain M6
-
Purification (Commentary)
Purification (Commentary)
Organism
-
Paracoccus pantotrophus
Source Tissue
Source Tissue
Commentary
Organism
Textmining
culture condition:anaerobically-grown cell
mutant strain (M-6) overproduces the enzyme activity under anaerobic growth conditions
Paracoccus pantotrophus
-
Specific Activity [micromol/min/mg]
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
95
-
-
Paracoccus pantotrophus
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
Substrate Product ID
nitrate + reduced methyl viologen
very high substrate specificity. The enzyme does not reduce any other oxocompound (chlorate, bromate, iodate, nitrite, molybdate, sulphate, thiosulphate, tetrathionate, selenate, dimethyl sulphoxide, trimethylamine-A-oxide, borate and arsenate)
697696
Paracoccus pantotrophus
nitrite + oxidized methyl viologen + H2O
-
-
-
?
Subunits
Subunits
Commentary
Organism
dimer
1 * 93000 + 1 * 16000, SDS-PAGE
Paracoccus pantotrophus
Synonyms
Synonyms
Commentary
Organism
periplasmic nitrate reductase
-
Paracoccus pantotrophus
Temperature Optimum [°C]
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
24
-
assay at
Paracoccus pantotrophus
pH Optimum
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
7.3
8
-
Paracoccus pantotrophus
pH Range
pH Minimum
pH Maximum
Commentary
Organism
7
9.5
pH 7.0: about 70% of maximal activity, pH 9.5: about 60% of maximal activity
Paracoccus pantotrophus
Cofactor
Cofactor
Commentary
Organism
Structure
cytochrome c552
the enzyme is a complex of a 93000 Da polypeptide and a 16000 Da nitrate-oxidizable cytochrome c552, cytochrome c552 contains two c-type heme moieties
Paracoccus pantotrophus
heme
contains 1.3 mol heme per mol of protein (assuminga 110-kDa molecular mass)
Paracoccus pantotrophus
Cofactor (protein specific)
Cofactor
Commentary
Organism
Structure
cytochrome c552
the enzyme is a complex of a 93000 Da polypeptide and a 16000 Da nitrate-oxidizable cytochrome c552, cytochrome c552 contains two c-type heme moieties
Paracoccus pantotrophus
heme
contains 1.3 mol heme per mol of protein (assuminga 110-kDa molecular mass)
Paracoccus pantotrophus
Inhibitors (protein specific)
Inhibitors
Commentary
Organism
Structure
additional information
insensitive to inhibition by azide
Paracoccus pantotrophus
Localization (protein specific)
Localization
Commentary
Organism
GeneOntology No.
Textmining
periplasm
-
Paracoccus pantotrophus
-
-
Metals/Ions (protein specific)
Metals/Ions
Commentary
Organism
Structure
Fe
contains 2.7 mol iron (of which 1.4 mol is presumably non-haem iron) per mol of protein (assuming a 110000 Da molecular mass)
Paracoccus pantotrophus
Mo
contains molybdenum, 0.9 mol molybdenum: 1 mol protein (assuminga 110000 Da molecular mass)
Paracoccus pantotrophus
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
16000
-
1 * 93000 + 1 * 16000, SDS-PAGE
Paracoccus pantotrophus
93000
-
1 * 93000 + 1 * 16000, SDS-PAGE
Paracoccus pantotrophus
110000
-
gel filtration
Paracoccus pantotrophus
Purification (Commentary) (protein specific)
Commentary
Organism
-
Paracoccus pantotrophus
Source Tissue (protein specific)
Source Tissue
Commentary
Organism
Textmining
culture condition:anaerobically-grown cell
mutant strain (M-6) overproduces the enzyme activity under anaerobic growth conditions
Paracoccus pantotrophus
-
Specific Activity [micromol/min/mg] (protein specific)
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
95
-
-
Paracoccus pantotrophus
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
ID
nitrate + reduced methyl viologen
very high substrate specificity. The enzyme does not reduce any other oxocompound (chlorate, bromate, iodate, nitrite, molybdate, sulphate, thiosulphate, tetrathionate, selenate, dimethyl sulphoxide, trimethylamine-A-oxide, borate and arsenate)
697696
Paracoccus pantotrophus
nitrite + oxidized methyl viologen + H2O
-
-
-
?
Subunits (protein specific)
Subunits
Commentary
Organism
dimer
1 * 93000 + 1 * 16000, SDS-PAGE
Paracoccus pantotrophus
Temperature Optimum [°C] (protein specific)
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
24
-
assay at
Paracoccus pantotrophus
pH Optimum (protein specific)
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
7.3
8
-
Paracoccus pantotrophus
pH Range (protein specific)
pH Minimum
pH Maximum
Commentary
Organism
7
9.5
pH 7.0: about 70% of maximal activity, pH 9.5: about 60% of maximal activity
Paracoccus pantotrophus
Other publictions for EC 1.9.6.1
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Synonyms
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
741478
Cerqueira
Periplasmic nitrate reductase ...
Desulfovibrio desulfuricans, Methylotenera mobilis, Methylotenera mobilis JLW8
Acc. Chem. Res.
48
2875-2884
2015
-
-
-
-
1
-
1
-
2
3
-
3
-
3
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1
-
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5
-
5
1
-
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1
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3
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3
-
1
-
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1
-
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2
3
-
3
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-
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-
-
-
5
-
1
-
-
-
1
-
-
-
-
5
5
-
-
-
742645
Lopez
The periplasmic nitrate reduc ...
Salmonella enterica, Salmonella enterica SL1344 AND CAL128
Infect. Immun.
83
3470-3478
2015
-
-
1
-
1
-
-
-
1
-
-
2
-
6
-
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-
-
-
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2
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2
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1
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1
1
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1
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1
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2
-
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-
-
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-
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2
-
-
-
-
-
-
-
-
-
-
3
3
-
-
-
741958
Jacques
Kinetics of substrate inhibit ...
Rhodobacter sphaeroides, Rhodobacter sphaeroides DSM 158
Biochim. Biophys. Acta
1837
1801-1809
2014
-
-
-
-
-
-
1
1
1
1
-
2
-
2
-
-
-
-
-
-
-
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4
1
2
1
-
-
-
1
-
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3
-
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-
-
-
-
3
-
-
-
-
1
-
1
1
1
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2
-
-
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-
-
-
-
-
4
1
1
-
-
-
1
-
-
-
-
1
1
-
-
-
742380
Sanchez
The nitrate-sensing NasST sys ...
Bradyrhizobium japonicum, Bradyrhizobium japonicum JCM 10833
Environ. Microbiol.
16
3263-3274
2014
-
-
1
-
1
-
-
-
1
-
-
-
-
5
-
-
-
-
-
-
-
-
-
-
2
-
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1
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1
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1
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-
-
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-
-
2
3
3
2
-
-
742486
Dow
Characterization of a peripla ...
Escherichia coli
FEBS J.
281
246-260
2014
1
-
1
1
1
-
-
-
1
2
-
1
-
4
-
-
1
-
-
-
-
-
1
1
2
-
-
-
-
-
-
-
3
-
-
-
1
-
1
3
1
1
-
-
-
-
-
1
2
-
1
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-
1
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1
1
-
-
-
-
-
-
-
-
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2
2
-
-
-
742319
Gonzalez
-
Periplasmic nitrate reductase ...
Anaeromyxobacter dehalogenans, Bradyrhizobium japonicum, Campylobacter jejuni subsp. jejuni, Campylobacter jejuni subsp. jejuni ATCC 700819, Cupriavidus necator, Cupriavidus necator H16 / ATCC 23440 / NCIB 10442 / S-10-1, Desulfitobacterium hafniense, Desulfovibrio desulfuricans, Escherichia coli, Paracoccus denitrificans, Paracoccus pantotrophus, Paracoccus pantotrophus GB17, Pseudomonas sp., Pseudomonas sp. G-179, Rhodobacter sphaeroides, Shewanella gelidimarina, Shewanella oneidensis, Wolinella succinogenes
Coord. Chem. Rev.
257
315-331
2013
-
-
14
-
-
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-
14
28
-
18
-
18
-
-
-
14
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18
14
43
-
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42
-
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14
42
-
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14
28
-
18
-
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-
-
-
-
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-
18
14
-
-
-
-
-
-
-
-
-
25
25
-
-
-
742648
Cerqueira
The sulfur shift an activatio ...
Desulfovibrio desulfuricans
Inorg. Chem.
52
10766-10772
2013
-
-
-
1
-
-
-
-
1
2
-
1
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1
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1
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1
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2
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2
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2
1
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1
2
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1
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1
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-
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1
1
-
-
-
712967
Simpson
The periplasmic nitrate reduct ...
Shewanella amazonensis, Shewanella amazonensis SB2B, Shewanella baltica, Shewanella baltica OS155, Shewanella baltica OS185, Shewanella baltica OS195, Shewanella baltica OS223, Shewanella denitrificans, Shewanella denitrificans OS217, Shewanella frigidimarina, Shewanella halifaxensis, Shewanella loihica, Shewanella loihica PV-4, Shewanella oneidensis, Shewanella oneidensis MR-1 / ATCC 700550, Shewanella pealeana, Shewanella piezotolerans, Shewanella piezotolerans WP3, Shewanella putrefaciens, Shewanella putrefaciens CN-32, Shewanella sediminis, Shewanella sp., Shewanella sp. ANA-3, Shewanella sp. MR-4, Shewanella sp. MR-7, Shewanella sp. W3-18-1, Shewanella woodyi
Microbiology
156
302-312
2010
-
-
-
-
-
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-
-
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42
-
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27
-
72
-
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26
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26
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27
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696917
Durvasula
Effect of periplasmic nitrate ...
Paracoccus pantotrophus
Biotechnol. Prog.
25
973-979
2009
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1
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5
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1
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1
1
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698636
Stewart
Catabolite repression control ...
Paracoccus pantotrophus
J. Bacteriol.
191
996-1005
2009
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1
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1
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5
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1
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699015
Hofmann
Density functional theory stud ...
Desulfovibrio desulfuricans
J. Biol. Inorg. Chem.
14
1023-1035
2009
-
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1
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1
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699199
Cerqueira
The effect of the sixth sulfur ...
Desulfovibrio desulfuricans
J. Comput. Chem.
30
2466-2484
2009
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1
1
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2
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1
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711653
Van Alst
Compensatory periplasmic nitra ...
Pseudomonas aeruginosa
Can. J. Microbiol.
55
1133-1144
2009
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1
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2
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1
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4
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1
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684990
Gates
Voltammetric characterization ...
Paracoccus pantotrophus
Biochem. J.
409
159-168
2008
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2
1
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1
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695337
Coelho
Heterodimeric nitrate reductas ...
Cupriavidus necator H16
Acta Crystallogr. Sect. F
63
516-519
2007
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1
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1
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674891
Jepson
Spectropotentiometric and stru ...
Escherichia coli
J. Biol. Chem.
282
6425-6437
2006
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1
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1
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2
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4
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1
1
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2
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2
1
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1
3
2
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1
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1
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675847
Nilavongse
The NapF protein of the Escher ...
Escherichia coli
Microbiology
152
3227-3237
2006
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2
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654561
Pittman
Electron transport through nit ...
Campylobacter jejuni
Biochem. Soc. Trans.
33
190-192
2005
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2
1
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1
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1
1
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1
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