BRENDA - Enzyme Database
show all sequences of 1.1.1.331

De novo transcriptomes of Forsythia koreana using a novel assembly method insight into tissue- and species-specific expression of lignan biosynthesis-related gene

Shiraishi, A.; Murata, J.; Matsumoto, E.; Matsubara, S.; Ono, E.; Satake, H.; PLoS ONE 11, e0164805 (2016)

Data extracted from this reference:

Cloned(Commentary)
Cloned (Commentary)
Organism
gene FkSIRD, DNA and amino acid sequence determination and analysis from Forsythia genome, phylogenetic analysis, quantitative RT-PCR enzyme expression analysis
Forsythia koreana
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
ID
(-)-secoisolariciresinol + 2 NAD+
Forsythia koreana
-
(-)-matairesinol + 2 NADH + 2 H+
-
-
?
Organism
Organism
UniProt
Commentary
Textmining
Forsythia koreana
-
-
-
Source Tissue
Source Tissue
Commentary
Organism
Textmining
callus
high expression level of FkSIRD
Forsythia koreana
-
leaf
-
Forsythia koreana
-
additional information
tissue- and species-specific expression of the lignan biosynthesis-related gene FkSIRD, transcriptome analysis, overview. The expression levels of DIR, PLR, SIRD, and MOMT are 40fold, 5fold, 50fold, and 2fold higher in callus than in leaf, respectively
Forsythia koreana
-
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
Substrate Product ID
(-)-secoisolariciresinol + 2 NAD+
-
743611
Forsythia koreana
(-)-matairesinol + 2 NADH + 2 H+
-
-
-
?
Synonyms
Synonyms
Commentary
Organism
FkSIRD
-
Forsythia koreana
matairesinol biosynthetic enzyme
-
Forsythia koreana
secoisolariciresinol dehydrogenase
-
Forsythia koreana
SirD
-
Forsythia koreana
Cofactor
Cofactor
Commentary
Organism
Structure
NAD+
-
Forsythia koreana
Cloned(Commentary) (protein specific)
Commentary
Organism
gene FkSIRD, DNA and amino acid sequence determination and analysis from Forsythia genome, phylogenetic analysis, quantitative RT-PCR enzyme expression analysis
Forsythia koreana
Cofactor (protein specific)
Cofactor
Commentary
Organism
Structure
NAD+
-
Forsythia koreana
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
ID
(-)-secoisolariciresinol + 2 NAD+
Forsythia koreana
-
(-)-matairesinol + 2 NADH + 2 H+
-
-
?
Source Tissue (protein specific)
Source Tissue
Commentary
Organism
Textmining
callus
high expression level of FkSIRD
Forsythia koreana
-
leaf
-
Forsythia koreana
-
additional information
tissue- and species-specific expression of the lignan biosynthesis-related gene FkSIRD, transcriptome analysis, overview. The expression levels of DIR, PLR, SIRD, and MOMT are 40fold, 5fold, 50fold, and 2fold higher in callus than in leaf, respectively
Forsythia koreana
-
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
ID
(-)-secoisolariciresinol + 2 NAD+
-
743611
Forsythia koreana
(-)-matairesinol + 2 NADH + 2 H+
-
-
-
?
Expression
Organism
Commentary
Expression
Forsythia koreana
all of the enzymes responsible for the biosynthesis of lignan aglycones, also SIRD, are upregulated in callus
up
General Information
General Information
Commentary
Organism
evolution
molecular phylogenetic analysis of specialized metabolic enzyme genes from lignan-producing plants, two common gene clusters include genes from various plants and plant lineage-specific gene clusters. The specialized metabolic enzyme genes from lignan-producing plants include enzymes involved in the early common lignan biosynthesis upstream of matairesinol such as PLR and SIRD, suggesting that they have occurred in their ancestral plants and conserved their biological functions
Forsythia koreana
metabolism
the enzyme is involved in the lignan biosynthesis pathway, overview
Forsythia koreana
physiological function
matairesinol biosynthesis is prominently enhanced and matairesinol is highly accumulated in callus
Forsythia koreana
General Information (protein specific)
General Information
Commentary
Organism
evolution
molecular phylogenetic analysis of specialized metabolic enzyme genes from lignan-producing plants, two common gene clusters include genes from various plants and plant lineage-specific gene clusters. The specialized metabolic enzyme genes from lignan-producing plants include enzymes involved in the early common lignan biosynthesis upstream of matairesinol such as PLR and SIRD, suggesting that they have occurred in their ancestral plants and conserved their biological functions
Forsythia koreana
metabolism
the enzyme is involved in the lignan biosynthesis pathway, overview
Forsythia koreana
physiological function
matairesinol biosynthesis is prominently enhanced and matairesinol is highly accumulated in callus
Forsythia koreana
Expression (protein specific)
Organism
Commentary
Expression
Forsythia koreana
all of the enzymes responsible for the biosynthesis of lignan aglycones, also SIRD, are upregulated in callus
up
Other publictions for EC 1.1.1.331
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Synonyms
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
743611
Shiraishi
De novo transcriptomes of For ...
Forsythia koreana
PLoS ONE
11
e0164805
2016
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1
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1
3
3
1
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743278
Arneaud
Investigation and expression ...
Phialocephala podophylli, Phialocephala podophylli PPE7, Podophyllum peltatum
Mol. Biotechnol.
57
961-973
2015
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2
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3
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8
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3
2
2
2
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2
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2
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2
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3
2
2
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2
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5
5
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741681
Kuo
Bioconversion of pinoresinol ...
Dysosma pleiantha
Appl. Environ. Microbiol.
80
2687-2692
2014
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1
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1
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1
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1
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5
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1
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1
3
2
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2
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1
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1
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1
1
2
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2
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742033
Morimoto
Seasonal alteration in amount ...
Forsythia x intermedia
Biol. Pharm. Bull.
36
1519-1523
2013
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1
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3
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1
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2
2
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743768
Wankhede
Expressed sequence tags and m ...
Sinopodophyllum hexandrum
Protoplasma
250
1239-1249
2013
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1
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1
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6
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5
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1
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1
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1
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1
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5
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1
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1
1
1
1
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720203
Lan
-
Molecular cloning and characte ...
Dysosma tsayuensis
J. Med. Plant Res.
4
484-489
2010
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1
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1
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1
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5
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5
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1
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1
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720614
Moinuddin
Secoisolariciresinol dehydroge ...
Podophyllum peltatum
Org. Biomol. Chem.
4
808-816
2006
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3
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4
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1
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1
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1
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1
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1
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719829
Youn
Crystal structures of apo-form ...
Podophyllum peltatum
J. Biol. Chem.
280
12917-12926
2005
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1
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4
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720350
Okunishi
-
Stereochemistry of matairesino ...
Daphne genkwa, Daphne odora
J. Wood Sci.
50
77-81
2004
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2
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2
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719805
Xia
Secoisolariciresinol dehydroge ...
Forsythia x intermedia, Podophyllum peltatum
J. Biol. Chem.
276
12614-12623
2001
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2
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