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Information on EC 4.1.1.39 - ribulose-bisphosphate carboxylase and Organism(s) Pisum sativum and UniProt Accession P04717

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EC Tree
     4 Lyases
         4.1 Carbon-carbon lyases
             4.1.1 Carboxy-lyases
                4.1.1.39 ribulose-bisphosphate carboxylase
IUBMB Comments
Will utilize O2 instead of CO2, forming 3-phospho-D-glycerate and 2-phosphoglycolate.
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This record set is specific for:
Pisum sativum
UNIPROT: P04717 not found.
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The taxonomic range for the selected organisms is: Pisum sativum
The expected taxonomic range for this enzyme is: Bacteria, Eukaryota, Archaea
Synonyms
rubisco, ribulose-1,5-bisphosphate carboxylase/oxygenase, ribulose-1,5-bisphosphate carboxylase, rubpcase, ribulose bisphosphate carboxylase, ribulose 1,5-bisphosphate carboxylase/oxygenase, ribulose 1,5-bisphosphate carboxylase, ribulose bisphosphate carboxylase/oxygenase, rubp carboxylase, rubisco small subunit, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
Carboxydismutase
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-
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D-Ribulose 1,5-diphosphate carboxylase
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-
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D-Ribulose-1,5-bisphosphate carboxylase
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Diphosphoribulose carboxylase
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-
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LESS17
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-
-
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PSS15
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-
-
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PSSU1
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-
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Ribulose 1,5-bisphosphate carboxylase
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Ribulose 1,5-bisphosphate carboxylase-oxygenase
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Ribulose 1,5-bisphosphate carboxylase/oxygenase
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Ribulose 1,5-diphosphate carboxylase
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-
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Ribulose 1,5-diphosphate carboxylase/oxygenase
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Ribulose bisphosphate carboxylase-oxygenase
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Ribulose diphosphate carboxylase
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Ribulose diphosphate carboxylase/oxygenase
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ribulose-1,5-bisphosphate carboxylase/oxygenase
Rubisco
RuBP carboxylase
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-
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Water stress responsive proteins 1, 2 and 14
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-
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REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
carboxylation
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oxygenation
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SYSTEMATIC NAME
IUBMB Comments
3-phospho-D-glycerate carboxy-lyase (dimerizing; D-ribulose-1,5-bisphosphate-forming)
Will utilize O2 instead of CO2, forming 3-phospho-D-glycerate and 2-phosphoglycolate.
CAS REGISTRY NUMBER
COMMENTARY hide
9027-23-0
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SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
D-ribulose 1,5-bisphosphate + CO2 + H2O
3-phospho-D-glycerate
show the reaction diagram
D-ribulose 1,5-bisphosphate + CO2 + H2O
3-phospho-D-glycerate + H+
show the reaction diagram
-
-
-
?
D-ribulose 1,5-bisphosphate + O2
3-phospho-D-glycerate + 2-phosphoglycolate
show the reaction diagram
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
D-ribulose 1,5-bisphosphate + CO2 + H2O
3-phospho-D-glycerate
show the reaction diagram
D-ribulose 1,5-bisphosphate + CO2 + H2O
3-phospho-D-glycerate + H+
show the reaction diagram
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-
-
?
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
carbonic anhydrase, phosphoribulokinase, phosphoglycerate kinase and Rubisco activase are near neighbors of Rubisco in the leaf chloroplast stroma
Manually annotated by BRENDA team
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
RBL_PEA
475
0
52763
Swiss-Prot
other Location (Reliability: 2)
D5MAG3_PEA
475
0
52763
TrEMBL
other Location (Reliability: 2)
U3LZ44_PEA
92
0
10022
TrEMBL
other Location (Reliability: 2)
A0A3G1MA08_PEA
184
0
20449
TrEMBL
other Location (Reliability: 3)
Q9FEW5_PEA
58
0
5868
TrEMBL
Chloroplast (Reliability: 4)
E7D0A8_PEA
192
0
21290
TrEMBL
other Location (Reliability: 2)
RBS3_PEA
180
0
20231
Swiss-Prot
-
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
15000
-
8 * 55000 + 8 * 15000
55000
-
8 * 55000 + 8 * 15000
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
hexadecamer
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8 * 55000 + 8 * 15000
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
hanging drop vapor diffusion method, with substrate ribulose 1,5-bisphosphate, using 10-12% (w/v) polyethylene glycol 6000 in 100 mM HEPES pH 7.0
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
partial purification of large subunit epsilon N-methyltransferase
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streptomycin and ammonium sulfate precipitations
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
cDNA cloned and sequenced
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REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Parry, M.A.; Andralojc, P.J.; Mitchell, R.A.; Madgwick, P.J.; Keys, A.J.
Manipulation of Rubisco: the amount, activity, function and regulation
J. Exp. Bot.
54
1321-1333
2003
Allochromatium vinosum, Arabidopsis thaliana, Avena sativa, Chlamydomonas reinhardtii, Cylindrotheca sp., Flaveria bidentis, Galdieria partita, Galdieria sulphuraria, Glycine max, Helianthus annuus, Hordeum vulgare, Solanum lycopersicum, Nicotiana tabacum, Olisthodiscus luteus, Oryza sativa, Petunia sp., Phaeodactylum tricornutum, Pisum sativum, Rhodobacter capsulatus, Cereibacter sphaeroides, Rhodospirillum rubrum, Spinacia oleracea, Triticum aestivum, Zea mays, Cylindrotheca sp. N1
Manually annotated by BRENDA team
Spreitzer, R.J.
Questions about the complexity of chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
Photosynth. Res.
60
29-42
1999
Arabidopsis sp., Chlamydomonas reinhardtii, Glycine max, Helianthus annuus, Hordeum vulgare, Solanum lycopersicum, Marchantia sp., Nicotiana tabacum, Petunia sp., Pisum sativum, Solanum tuberosum, Spinacia oleracea, Triticum aestivum, Zea mays
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Manually annotated by BRENDA team
Anderson, L.E.; Carol, A.A.
Enzyme co-localization with rubisco in pea leaf chloroplasts
Photosynth. Res.
82
49-58
2004
Pisum sativum
Manually annotated by BRENDA team
Loewen, P.C.; Didychuk, A.L.; Switala, J.; Perez-Luque, R.; Fita, I.; Loewen, M.C.
Structure of Pisum sativum Rubisco with bound ribulose 1,5-bisphosphate
Acta Crystallogr. Sect. F
69
10-14
2013
Pisum sativum (P04717 and P07689), Pisum sativum
Manually annotated by BRENDA team