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Information on EC 4.1.1.20 - diaminopimelate decarboxylase and Organism(s) Arabidopsis thaliana and UniProt Accession Q94A94

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EC Tree
     4 Lyases
         4.1 Carbon-carbon lyases
             4.1.1 Carboxy-lyases
                4.1.1.20 diaminopimelate decarboxylase
IUBMB Comments
A pyridoxal-phosphate protein.
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This record set is specific for:
Arabidopsis thaliana
UNIPROT: Q94A94
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Word Map
The taxonomic range for the selected organisms is: Arabidopsis thaliana
The enzyme appears in selected viruses and cellular organisms
Synonyms
diaminopimelate decarboxylase, dapdc, lysa2, meso-diaminopimelate decarboxylase, dap-decarboxylase, dap decarboxylase, diaminopimelic acid decarboxylase, cgdapdc, lysa1, at3g14390, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
At5g11880
locus name
DAP decarboxylase 2
-
diaminopimelate decarboxylase 2
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At3g14390
locus name
DAP decarboxylase
-
-
-
-
DAP decarboxylase 1
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DAP-decarboxylase
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-
-
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Decarboxylase, diaminopimelate
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-
-
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diaminopimelate decarboxylase 1
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Diaminopimelic acid decarboxylase
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-
-
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meso-diaminopimelate decarboxylase
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-
-
-
REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
decarboxylation
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-
-
-
SYSTEMATIC NAME
IUBMB Comments
meso-2,6-diaminoheptanedioate carboxy-lyase (L-lysine-forming)
A pyridoxal-phosphate protein.
CAS REGISTRY NUMBER
COMMENTARY hide
9024-75-3
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SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
diaminopimelate
L-lysine + CO2
show the reaction diagram
-
-
-
?
diaminopimelate
L-lysine + CO2
show the reaction diagram
NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
diaminopimelate
L-lysine + CO2
show the reaction diagram
-
-
-
?
diaminopimelate
L-lysine + CO2
show the reaction diagram
a step in the lysine biosynthetic pathway, overview
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-
?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
pyridoxal 5'-phosphate
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pyridoxal 5'-phosphate
dependent on, the DAPDC1 protein contains a PLP binding consensus site, overview
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
6.54
sequence calculation
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
additional information
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
UNIPROT
ENTRY NAME
ORGANISM
NO. OF AA
NO. OF TRANSM. HELICES
MOLECULAR WEIGHT[Da]
SOURCE
SEQUENCE
LOCALIZATION PREDICTION?
DCDA2_ARATH
489
0
54164
Swiss-Prot
Chloroplast (Reliability: 2)
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
53600
x * 53600, about, sequence calculation
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
x * 53600, about, sequence calculation
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expression in Escherichia coli
gene DAPDC2, localization on chromosome V, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, overview
expression in Escherichia coli
gene DAPDC1, DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic tree, overview
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Kim, J.
Diaminopimelate decarboxylase from Arabidopsis contains motifs for pyridoxal-5'-phosphate and substrate
Asian J. Plant Sci.
5
260-265
2006
Arabidopsis thaliana (Q949X7), Arabidopsis thaliana (Q94A94)
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Manually annotated by BRENDA team
Oliver, M.R.; Crowther, J.M.; Leeman, M.M.; Kessans, S.A.; North, R.A.; Donovan, K.A.; Griffin, M.D.; Suzuki, H.; Hudson, A.O.; Kasanmascheff, M.; Dobson, R.C.
The purification, crystallization and preliminary X-ray diffraction analysis of two isoforms of meso-diaminopimelate decarboxylase from Arabidopsis thaliana
Acta Crystallogr. Sect. F
70
663-668
2014
Arabidopsis thaliana (Q949X7), Arabidopsis thaliana (Q94A94), Arabidopsis thaliana
Manually annotated by BRENDA team