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Information on EC 1.7.1.6 - azobenzene reductase and Organism(s) Enterococcus faecalis and UniProt Accession Q831B2

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IUBMB Comments
The reaction occurs in the reverse direction to that shown above. Other azo dyes, such as Methyl Red, Rocceline, Solar Orange and Sumifix Black B can also be reduced .
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This record set is specific for:
Enterococcus faecalis
UNIPROT: Q831B2
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The taxonomic range for the selected organisms is: Enterococcus faecalis
The expected taxonomic range for this enzyme is: Bacteria, Archaea, Eukaryota
Synonyms
azo reductase, azo-reductase, paazor1, orange ii azoreductase, azor1, ef0404, azobenzene reductase, aerobic azoreductase, orange i azoreductase, azoreductase 1, more
SYNONYM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
azo dye reductase
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azo reductase
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azo-dye reductase
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azoreductase
class 1 azoreductase
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dibromopropylaminophenylazobenzoic azoreductase
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dimethylaminobenzene reductase
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FMN-dependent NAD(P)H azoreductase
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FMN-dependent NAD(P)H nitroreductase
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methyl red azoreductase
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N,N-dimethyl-4-phenylazoaniline azoreductase
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NAD(P)H:1-(4'-sulfophenylazo)-2-naphthol oxidoreductase
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NADPH2-dependent azoreductase
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NC-reductase
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new Coccine (NC)-reductase
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nicotinamide adenine dinucleotide (phosphate) azoreductase
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Orange II azoreductase
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p-aminoazobenzene reductase
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p-dimethylaminoazobenzene azoreductase
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reductase, azobenzene
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REACTION
REACTION DIAGRAM
COMMENTARY hide
ORGANISM
UNIPROT
LITERATURE
N,N-dimethyl-1,4-phenylenediamine + aniline + 2 NADP+ = 4-(dimethylamino)azobenzene + 2 NADPH + 2 H+
show the reaction diagram
the catalytic reaction requires tautomerisation of the azo compound to a quinoneimine and provides a unifying mechanism for the reduction of azo substrates by azoreductases
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REACTION TYPE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
oxidation
reduction
redox reaction
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oxidation
reduction
SYSTEMATIC NAME
IUBMB Comments
N,N-dimethyl-1,4-phenylenediamine, aniline:NADP+ oxidoreductase
The reaction occurs in the reverse direction to that shown above. Other azo dyes, such as Methyl Red, Rocceline, Solar Orange and Sumifix Black B can also be reduced [2].
CAS REGISTRY NUMBER
COMMENTARY hide
9029-31-6
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SUBSTRATE
PRODUCT                       
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
Reversibility
r=reversible
ir=irreversible
?=not specified
methyl red + NAD(P)H + H+
?
show the reaction diagram
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-
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?
methyl red + NADH + H+
? + NAD+
show the reaction diagram
-
-
-
?
1-(4'-carboxyphenylazo)-2-naphthol + NADH
4-amino-1-benzoic acid + NAD+ + 1-amino-2-hydroxynaphthalene
show the reaction diagram
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substrate is carboxy-Orange II
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-
?
2-[4-(dimethylamino)phenylazo]benzoic acid + NADH
2-aminobenzoic acid + N,N-dimethyl-1,4-phenylenediamine + NAD+
show the reaction diagram
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substrate is Methyl red
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?
4-dimethylaminoazobenzene-2'-carboxylic acid + 2 NADPH + 2 H+
anthranilate + N,N'-dimethylamino-aniline + 2 NADP+
show the reaction diagram
i.e. methyl red
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-
?
Amaranth + NADH
?
show the reaction diagram
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-
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-
?
direct blue 15 + ?
?
show the reaction diagram
-
-
-
-
?
methyl red + 2 NADH + 2 H+
N,N-dimethyl-p-phenylenediamine + 2-aminobenzoic acid + 2 NAD+
show the reaction diagram
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?
methyl red + NADH + H+
?
show the reaction diagram
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?
methyl red + NADH + H+
? + NAD+
show the reaction diagram
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-
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?
methyl red + NADPH + H+
?
show the reaction diagram
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-
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-
?
Orange G + NADH
?
show the reaction diagram
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-
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?
orange II + NADH + H+
? + NAD+
show the reaction diagram
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-
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?
Ponceau BS + NADH
?
show the reaction diagram
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?
ponceau BS + NADH + H+
? + NAD+
show the reaction diagram
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?
Ponceau S + NADH
?
show the reaction diagram
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-
?
additional information
?
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NATURAL SUBSTRATE
NATURAL PRODUCT
REACTION DIAGRAM
ORGANISM
UNIPROT
COMMENTARY
(Substrate) hide
LITERATURE
(Substrate)
COMMENTARY
(Product) hide
LITERATURE
(Product)
REVERSIBILITY
r=reversible
ir=irreversible
?=not specified
additional information
?
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important for the conversion of azo dyes in the gastrointestinal tract
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?
COFACTOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
NADPH
180fold preference for NADH over NADPH as an electron donor to reduce methyl red
NADPH
additional information
-
INHIBITOR
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
Cibacron blue
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a competitive NAD(P)H inhibitor
KM VALUE [mM]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
0.00053 - 0.109
Methyl red
0.003 - 2.298
NADH
0.024
2-[4-(dimethylamino)phenylazo]benzoic acid
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pH 7.1, 23°C
0.011 - 0.0282
Methyl red
0.082 - 0.175
NADH
15
NADPH
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in 50 mM potassium phosphate buffer pH 7.0 at 25°C
TURNOVER NUMBER [1/s]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
1.2 - 245
Methyl red
kcat/KM VALUE [1/mMs-1]
SUBSTRATE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
IMAGE
110 - 14580
Methyl red
1.5 - 7030
NADH
0.0019
Methyl red
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in 50 mM potassium phosphate buffer pH 7.0 at 25°C
SPECIFIC ACTIVITY [µmol/min/mg]
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
0.003
purification step extract
0.014
purification octyl-sepharose 4 fast flow
0.224
purification DEAE Bio gel
0.626
purification step affinity gel
0.003
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crude extract, using methyl red and NADPH as substrates, in 50 mM potassium phosphate buffer pH 7.0 at 25°C
626
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after 209fold purification, using methyl red and NADPH as substrates, in 50 mM potassium phosphate buffer pH 7.0 at 25°C
63.9
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purified enzyme, pH 7.1, 23°C, with Methyl red and NADH as substrates
pH OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
7.1
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activity assay
TEMPERATURE OPTIMUM
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
25
activity assay
23
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activity assay at room temperature
pI VALUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
4.8
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calculated
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
additional information
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azoreductases are primarily cytosolic enzymes, but have been shown to be secreted during exposure of bacteria to azo dyes
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Manually annotated by BRENDA team
GENERAL INFORMATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
evolution
physiological function
MOLECULAR WEIGHT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
23000
43000
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gel filtration
SUBUNIT
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
?
x * 25000, recombinant His-tagged enzyme, SDS-PAGE
dimer
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2 * 23000, SDS-PAGE
homodimer
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2 * 23000
CRYSTALLIZATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
modeling of structure. Binding mode shows that the benzoic acid moiety of substrate methyl red and the nicotinamide ring of NADH are not parallel to the flavin isoalloxazine ring, but lay against it at angles of about 45 and 35 degrees, respectively. The adenine ribose moiety of NADH is surrounded by loop l2 on chain B and alpha3 on chain A in a typical Rossmann fold
PROTEIN VARIANTS
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
A123F
36% of wild-type activity
D184G
complete loss of activity
E16G
46% of wild-type activity
F127G
complete loss of activity
L59G
10% of wild-type activity
N106A
3% of wild-type activity
N121A
170% of wild-type activity
R18G
9% of wild-type activity
R21G
382% of wild-type activity
R66A
47% of wild-type activity
V122Y
14% of wild-type activity
W62A
35% of wild-type activity
Y129G
complete loss of activity
W105A
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mutant, complete loss of both affinity for FMN and enzyme activity
W105F
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mutant, lower Vmax value, decrease 30.6fold
W105G
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mutant, complete loss of both affinity for FMN and enzyme activity
W105H
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mutant, lower Vmax value, decrease 8.2fold
W105Q
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mutant, lower Vmax value, decrease 68.2fold
W105Y
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mutant, substitution does not significantly decrease the Vmax of the enzyme, 22% reduction
TEMPERATURE STABILITY
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
59
Tm of gene EF_0404
PURIFICATION (Commentary)
ORGANISM
UNIPROT
LITERATURE
cell extracts of Enterococcus faecalis are prepared, AzoA is purified by hydrophobic, anion exchange and affinity chromatography
by anion-exchange chromatography and by gel filtration
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octyl Sepharose column chromatography, DEAE Bio-gel agarose column chromatography, and Affi-gel Blue gel filtration
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recombinant enzyme
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recombinant FMN cofactor-bound His-tagged enzyme from Escherichia coli strain XL1-Blue by affinity chromatography and dialysis
CLONED (Commentary)
ORGANISM
UNIPROT
LITERATURE
expressed in Escherichia coli BL21-Gold(DE3)pLysS
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expression in Escherichia coli
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gene EF_0404, phylogenetic analysis and tree, recombinant overexpression of His-tagged enzyme in Escherichia coli strain XL1-Blue from vector pQE30
into the vector pET-11a for expression in Escherichia coli BL21-Gold DE3 pLysS cells
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phylogenetic tree
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APPLICATION
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
degradation
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expression of enzyme gene AzoA in Escherichia coli induces a higher rate of dye reduction with increases of 2fold for methyl red, 4fold for ponceau BS and 2.6fold for orange II compared to noninduced cells, respectively
drug development
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azoreductases from enteric bacteria are targets in the development of drugs for the treatment of colon related disorders
REF.
AUTHORS
TITLE
JOURNAL
VOL.
PAGES
YEAR
ORGANISM (UNIPROT)
PUBMED ID
SOURCE
Chen, H.; Wang, R.F.; Cerniglia, C.E.
Molecular cloning, overexpression, purification, and characterization of an aerobic FMN-dependent azoreductase from Enterococcus faecalis
Protein Expr. Purif.
34
302-310
2004
Enterococcus faecalis
Manually annotated by BRENDA team
Chen, H.
Recent advances in azo dye degrading enzyme research
Curr. Protein Pept. Sci.
7
101-111
2006
Acidaminococcus fermentans, Bacillus sp. (in: Bacteria), Bacillus sp. (in: Bacteria) OY-2, Bacillus sp. (in: Bacteria) SF, Bacillus subtilis, Bacteroides thetaiotaomicron, Bifidobacterium adolescentis, Blautia obeum, Cereibacter sphaeroides, Citrobacter sp., Clostridium perfringens, Coprococcus catus, Enterocloster clostridioformis, Enterococcus faecalis, Escherichia coli, Fusobacterium sp., Holdemanella biformis, Kocuria rosea, Kocuria varians, Micrococcus luteus, Pantoea agglomerans, Pigmentiphaga kullae, Pigmentiphaga kullae K24, Proteus vulgaris, Shigella dysenteriae, Staphylococcus aureus, Staphylococcus epidermidis, Xenophilus azovorans, Xenophilus azovorans KF46
Manually annotated by BRENDA team
Bafana, A.; Chakrabarti, T.
Lateral gene transfer in phylogeny of azoreductase enzyme
Comput. Biol. Chem.
32
191-197
2008
Bacillus sp. (in: Bacteria) (Q9FAW5), Bacillus sp. (in: Bacteria) OY1-2 (Q9FAW5), Bacillus subtilis (O07529), Bacillus subtilis 168 (O07529), Cereibacter sphaeroides (Q8GKS3), Cereibacter sphaeroides AS1.1737 (Q8GKS3), Enterococcus faecalis (Q831B2), Escherichia coli (Q8X9S9), Geobacillus stearothermophilus (Q8RR37), Pigmentiphaga kullae (Q6YAN1), Pigmentiphaga kullae K24 (Q6YAN1), Staphylococcus aureus (Q50H63), Xenophilus azovorans (Q8KU07), Xenophilus azovorans KF46F / DSM 13620 (Q8KU07)
Manually annotated by BRENDA team
Punj, S.; John, G.H.
Purification and identification of an FMN-dependent NAD(P)H azoreductase from Enterococcus faecalis
Curr. Issues Mol. Biol.
11
59-65
2009
Enterococcus faecalis (Q831B2), Enterococcus faecalis
Manually annotated by BRENDA team
Chen, H.; Xu, H.; Kweon, O.; Chen, S.; Cerniglia, C.
Functional role of Trp-105 of Enterococcus faecalis azoreductase (AzoA) as resolved by structural and mutational analysis
Microbiology
154
2659-2667
2008
Enterococcus faecalis
Manually annotated by BRENDA team
Punj, S.; John, G.
Purification and identification of an FMN-dependent NAD(P)H azoreductase from Enterococcus faecalis
Curr. Issues Mol. Biol.
11
59-66
2009
Enterococcus faecalis, Enterococcus faecalis ATCC 27274
Manually annotated by BRENDA team
Feng, J.; Kweon, O.; Xu, H.; Cerniglia, C.E.; Chen, H.
Probing the NADH- and Methyl Red-binding site of a FMN-dependent azoreductase (AzoA) from Enterococcus faecalis
Arch. Biochem. Biophys.
520
99-107
2012
Enterococcus faecalis (Q831B2)
Manually annotated by BRENDA team
Feng, J.; Heinze, T.; Xu, H.; Cerniglia, C.; Chen, H.
Evidence for significantly enhancing reduction of azo dyes in Escherichia coli by expressed cytoplasmic azoreductase (AzoA) of Enterococcus faecalis
Protein Pept. Lett.
17
578-584
2010
Enterococcus faecalis
Manually annotated by BRENDA team
Chalansonnet, V.; Mercier, C.; Orenga, S.; Gilbert, C.
Identification of Enterococcus faecalis enzymes with azoreductases and/or nitroreductase activity
BMC Microbiol.
17
126
2017
Enterococcus faecalis (Q838N5), Enterococcus faecalis
Manually annotated by BRENDA team
Ryan, A.
Azoreductases in drug metabolism
Br. J. Pharmacol.
174
2161-2173
2017
Bacillus sp. B29 (C0STY1), Bacillus subtilis, Cereibacter sphaeroides, Enterococcus faecalis, Escherichia coli, Pseudomonas aeruginosa (Q9I5F3), Pseudomonas putida
-
Manually annotated by BRENDA team