Sequence of RNL_ARATH

EC Number
Recommended Name
Accession Code
Organism
No of amino acids
Molecular Weight [Da]
Source
RNA ligase (ATP)
Q0WL81
Arabidopsis thaliana
1104
123205
Reaction
(ribonucleotide)n-3'-hydroxyl + 5'-(5'-diphosphoadenosine)-(ribonucleotide)m = (ribonucleotide)n+m + AMP
Sequences with same EC No.
Sequence
show sequence in fasta format
   0 MDAPFESGDS SATVVAEAVN NQFGGLSLKE SNTNAPVLPS QTTSNHRVQN LVWKPKSYGT
  60 VSGSSSATEV GKTSAVSQIG SSGDTKVGLN LSKIFGGNLL EKFSVDKSTY CHAQIRATFY
 120 PKFENEKTDQ EIRTRMIEMV SKGLATLEVS LKHSGSLFMY AGHKGGAYAK NSFGNIYTAV
 180 GVFVLSRMFR EAWGTKAPKK EAEFNDFLEK NRMCISMELV TAVLGDHGQR PLDDYVVVTA
 240 VTELGNGKPQ FYSTSEIISF CRKWRLPTNH VWLFSTRKSV TSFFAAFDAL CEEGIATSVC
 300 RALDEVADIS VPASKDHVKV QGEILEGLVA RIVSSQSSRD MENVLRDHPP PPCDGANLDL
 360 GLSLREICAA HRSNEKQQMR ALLRSVGPSF CPSDVEWFGD ESHPKSADKS VITKFLQSQP
 420 ADYSTSKLQE MVRLMKEKRL PAAFKCYHNF HRAEDISPDN LFYKLVVHVH SDSGFRRYHK
 480 EMRHMPSLWP LYRGFFVDIN LFKSNKGRDL MALKSIDNAS ENDGRGEKDG LADDDANLMI
 540 KMKFLTYKLR TFLIRNGLSI LFKDGAAAYK TYYLRQMKIW GTSDGKQKEL CKMLDEWAAY
 600 IRRKCGNDQL SSSTYLSEAE PFLEQYAKRS PKNHILIGSA GNLVRTEDFL AIVDGDLDEE
 660 GDLVKKQGVT PATPEPAVKE AVQKDEGLIV FFPGIPGSAK SALCKELLNA PGGFGDDRPV
 720 HTLMGDLVKG KYWPKVADER RKKPQSIMLA DKNAPNEDVW RQIEDMCRRT RASAVPIVAD
 780 SEGTDTNPYS LDALAVFMFR VLQRVNHPGK LDKESSNAGY VLLMFYHLYE GKNRNEFESE
 840 LIERFGSLIK MPLLKSDRTP LPDPVKSVLE EGIDLFNLHS RRHGRLESTK GTYAAEWTKW
 900 EKQLRDTLVA NSEYLSSIQV PFESMVHQVR EELKTIAKGD YKPPSSEKRK HGSIVFAAIN
 960 LPATQVHSLL EKLAAANPTM RSFLEGKKKS IQEKLERSHV TLAHKRSHGV ATVASYSQHL
1020 NREVPVELTE LIYNDKMAAL TAHVGSVDGE TVVSKNEWPH VTLWTAEGVT AKEANTLPQL
1080 YLEGKASRLV IDPPVSISGP LEFF
Download this sequence
in fasta format
Download all sequences for 6.5.1.3
in fasta format
in csv (Excel, OpenOffice) format
Sequence related references
Sequence Reference
Authors
Title
Journal
Volume
Pages
Year
PubMed ID
824193
Theologis A.,Ecker J.R.,Palm C.J.,Federspiel N.A.,Kaul S.,White O.,Alonso J.,Altafi H.,Araujo R.,Bowman C.L.,Brooks S.Y.,Buehler E.,Chan A.,Chao Q.,Chen H.,Cheuk R.F.,Chin C.W.,Chung M.K.,Conn L.,Conway A.B.,Conway A.R.,Creasy T.H.,Dewar K.,Dunn P.,Etgu P.,Feldblyum T.V.,Feng J.-D.,Fong B.,Fujii C.Y.,Gill J.E.,Goldsmith A.D.,Haas B.,Hansen N.F.,Hughes B.,Huizar L.,Hunter J.L.,Jenkins J.,Johnson-Hopson C.,Khan S.,Khaykin E.,Kim C.J.,Koo H.L.,Kremenetskaia I.,Kurtz D.B.,Kwan A.,Lam B.,Langin-Hooper S.,Lee A.,Lee J.M.,Lenz C.A.,Li J.H.,Li Y.-P.,Lin X.,Liu S.X.,Liu Z.A.,Luros J.S.,Maiti R.,Marziali A.,Militscher J.,Miranda M.,Nguyen M.,Nierman W.C.,Osborne B.I.,Pai G.,Peterson J.,Pham P.K.,Rizzo M.,Rooney T.,Rowley D.,Sakano H.,Salzberg S.L.,Schwartz J.R.,Shinn P.,Southwick A.M.,Sun H.,Tallon L.J.,Tambunga G.,Toriumi M.J.,Town C.D.,Utterback T.,Van Aken S.,Vaysberg M.,Vysotskaia V.S.,Walker M.,Wu D.,Yu G.,Fraser C.M.,Venter J.C.,Davis R.W.
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
Nature
408
816-820
2000
824194
Cheng C.Y.,Krishnakumar V.,Chan A.P.,Thibaud-Nissen F.,Schobel S.,Town C.D.
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.
Plant J.
89
789-804
2017
824197
Englert M.,Beier H.
Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins.
Nucleic Acids Res.
33
388-399
2005
824198
Wang L.K.,Schwer B.,Englert M.,Beier H.,Shuman S.
Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.
Nucleic Acids Res.
34
517-527
2006
824199
Mori T.,Ogasawara C.,Inada T.,Englert M.,Beier H.,Takezawa M.,Endo T.,Yoshihisa T.
Dual functions of yeast tRNA ligase in the unfolded protein response: unconventional cytoplasmic splicing of HAC1 pre-mRNA is not sufficient to release translational attenuation.
Mol. Biol. Cell
21
3722-3734
2010
824200
Remus B.S.,Shuman S.
A kinetic framework for tRNA ligase and enforcement of a 2'-phosphate requirement for ligation highlights the design logic of an RNA repair machine.
RNA
19
659-669
2013
824201
Remus B.S.,Shuman S.
Distinctive kinetics and substrate specificities of plant and fungal tRNA ligases.
RNA
20
462-473
2014
824202
Leitner J.,Retzer K.,Malenica N.,Bartkeviciute R.,Lucyshyn D.,Jaeger G.,Korbei B.,Bystroem A.,Luschnig C.
Meta-regulation of Arabidopsis auxin responses depends on tRNA maturation.
Cell Rep.
11
516-526
2015