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TaxTree of Organism human gut metagenome
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PATHWAY 
BRENDA Link
KEGG Link
MetaCyc Link
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
(S)-reticuline biosynthesis I
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PWY-3581
(S)-reticuline biosynthesis II
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PWY-6133
1,3-propanediol biosynthesis (engineered)
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PWY-7385
1,5-anhydrofructose degradation
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PWY-6992
1-butanol autotrophic biosynthesis (engineered)
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PWY-6886
2,3-dihydroxybenzoate biosynthesis
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PWY-5901
2-arachidonoylglycerol biosynthesis
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PWY-8052
2-carboxy-1,4-naphthoquinol biosynthesis
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PWY-5837
2-nitrotoluene degradation
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PWY-5641
4-aminobutanoate degradation V
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PWY-5022
4-deoxy-L-threo-hex-4-enopyranuronate degradation
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PWY-6507
4-hydroxy-2-nonenal detoxification
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PWY-7112
ABH and Lewis epitopes biosynthesis from type 1 precursor disaccharide
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PWY-7832
ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide
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PWY-7831
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acetyl-CoA fermentation to butanoate
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PWY-5676
adenosine nucleotides degradation I
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PWY-6596
adenosine ribonucleotides de novo biosynthesis
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PWY-7219
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
alanine racemization
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PWY-8072
alginate degradation
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PWY-6986
alliin metabolism
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PWY-5706
Amaryllidacea alkaloids biosynthesis
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PWY-7826
ammonia oxidation II (anaerobic)
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P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
ansatrienin biosynthesis
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PWY-8040
arachidonate metabolites biosynthesis
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PWY-8397
arginine dependent acid resistance
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PWY0-1299
aromatic biogenic amine degradation (bacteria)
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PWY-7431
avenanthramide biosynthesis
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PWY-8157
beta-carboline biosynthesis
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PWY-5877
beta-D-glucuronide and D-glucuronate degradation
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PWY-7247
betaxanthin biosynthesis
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PWY-5426
betaxanthin biosynthesis (via dopamine)
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PWY-5403
Bifidobacterium shunt
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P124-PWY
bile acids deconjugation
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PWY-8135
biosynthesis of Lewis epitopes (H. pylori)
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PWY-7833
bupropion degradation
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PWY66-241
C20 prostanoid biosynthesis
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PWY66-374
Calvin-Benson-Bassham cycle
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CALVIN-PWY
camalexin biosynthesis
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CAMALEXIN-SYN
canavanine degradation
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PWY-31
capsaicin biosynthesis
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PWY-5710
catechol degradation to 2-hydroxypentadienoate I
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P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
catecholamine biosynthesis
cellulose and hemicellulose degradation (cellulolosome)
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PWY-6784
ceramide de novo biosynthesis
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PWY3DJ-12
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
chlorogenic acid biosynthesis I
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PWY-6039
choline degradation III
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PWY-7167
chorismate biosynthesis from 3-dehydroquinate
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PWY-6163
CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis
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PWY-6140
coumarins biosynthesis (engineered)
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PWY-7398
creatine phosphate biosynthesis
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PWY-6158
curcuminoid biosynthesis
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PWY-6432
D-cycloserine biosynthesis
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PWY-7274
di-homo-gamma-linolenate metabolites biosynthesis
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PWY-8396
diethylphosphate degradation
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PWY-5491
dopamine degradation
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PWY6666-2
dTMP de novo biosynthesis (mitochondrial)
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PWY66-385
Entner-Doudoroff pathway I
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PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
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NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
ethanol degradation IV
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PWY66-162
ethene biosynthesis IV (engineered)
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PWY-7126
ethene biosynthesis V (engineered)
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PWY-7124
Fe(II) oxidation
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PWY-6692
folate transformations I
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PWY-2201
folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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1CMET2-PWY
formaldehyde assimilation I (serine pathway)
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PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
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PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
fructan degradation
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PWY-862
gallate degradation III (anaerobic)
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P3-PWY
gliotoxin biosynthesis
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PWY-7533
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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PWY-6842
glycerol degradation to butanol
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PWY-7003
glycogen degradation II
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PWY-5941
glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
guanosine ribonucleotides de novo biosynthesis
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PWY-7221
heparan sulfate biosynthesis
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PWY-6558
heterolactic fermentation
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P122-PWY
homospermidine biosynthesis I
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PWY-5907
homospermidine biosynthesis II
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PWY-8149
hydroxycinnamic acid serotonin amides biosynthesis
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PWY-5473
hydroxycinnamic acid tyramine amides biosynthesis
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PWY-5474
icosapentaenoate metabolites biosynthesis
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PWY-8399
indole glucosinolate activation (intact plant cell)
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PWYQT-4477
indole-3-acetate biosynthesis II
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PWY-581
inosine 5'-phosphate degradation
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PWY-5695
inulin degradation
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PWY-8314
L-alanine degradation I
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ALADEG-PWY
L-alanine degradation II (to D-lactate)
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ALACAT2-PWY
L-arginine degradation I (arginase pathway)
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ARGASEDEG-PWY
L-arginine degradation III (arginine decarboxylase/agmatinase pathway)
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PWY0-823
L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)
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ARGDEG-III-PWY
L-arginine degradation VI (arginase 2 pathway)
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ARG-PRO-PWY
L-arginine degradation VII (arginase 3 pathway)
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ARG-GLU-PWY
L-asparagine biosynthesis II
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ASPARAGINESYN-PWY
L-carnitine degradation II
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PWY-3641
L-citrulline biosynthesis
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CITRULBIO-PWY
L-cysteine biosynthesis I
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CYSTSYN-PWY
L-cysteine biosynthesis VI (reverse transsulfuration)
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PWY-I9
L-cysteine biosynthesis VII (from S-sulfo-L-cysteine)
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PWY-7870
L-dopa degradation II (bacterial)
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PWY-8110
L-galactonate degradation
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PWY0-1306
L-glutamate degradation I
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GLUTAMATE-DEG1-PWY
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-glutamate degradation XI (reductive Stickland reaction)
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PWY-8190
L-histidine degradation V
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PWY-5031
L-lysine biosynthesis I
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DAPLYSINESYN-PWY
L-lysine biosynthesis II
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PWY-2941
L-lysine biosynthesis III
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PWY-2942
L-lysine biosynthesis VI
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PWY-5097
L-methionine biosynthesis I
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HOMOSER-METSYN-PWY
L-methionine biosynthesis III
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HSERMETANA-PWY
L-methionine degradation I (to L-homocysteine)
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METHIONINE-DEG1-PWY
L-methionine salvage from L-homocysteine
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ADENOSYLHOMOCYSCAT-PWY
L-Ndelta-acetylornithine biosynthesis
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PWY-6922
L-phenylalanine degradation IV (mammalian, via side chain)
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PWY-6318
L-serine biosynthesis I
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SERSYN-PWY
L-tryptophan degradation VI (via tryptamine)
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PWY-3181
L-tryptophan degradation X (mammalian, via tryptamine)
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PWY-6307
lacto-series glycosphingolipids biosynthesis
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PWY-7839
lanosterol biosynthesis
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PWY-6132
lipid A-core biosynthesis (E. coli K-12)
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LIPA-CORESYN-PWY
luteolin triglucuronide degradation
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PWY-7445
maltose degradation
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MALTOSECAT-PWY
melatonin degradation I
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PWY-6398
melatonin degradation II
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PWY-6399
methanofuran biosynthesis
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PWY-5254
methanol oxidation to formaldehyde IV
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PWY-5506
methiin metabolism
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PWY-7614
methyl indole-3-acetate interconversion
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PWY-6303
methylaspartate cycle
methylsalicylate degradation
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PWY18C3-24
N-3-oxalyl-L-2,3-diaminopropanoate biosynthesis
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PWY-8071
NAD salvage pathway V (PNC V cycle)
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PWY3O-4107
NAD(P)/NADPH interconversion
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PWY-5083
NADH to cytochrome bd oxidase electron transfer I
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PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
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PWY0-1335
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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PWY-381
nitrate reduction VII (denitrification)
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PWY-6748
nitric oxide biosynthesis II (mammals)
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PWY-4983
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
nitroethane degradation
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PWY-5355
nitrogen fixation I (ferredoxin)
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N2FIX-PWY
nocardicin A biosynthesis
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PWY-7797
noradrenaline and adrenaline degradation
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PWY-6342
norspermidine biosynthesis
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PWY-6562
octopamine biosynthesis
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PWY-7297
oleandomycin activation/inactivation
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PWY-6972
pectin degradation I
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PWY-7246
pectin degradation II
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PWY-7248
pentachlorophenol degradation
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PCPDEG-PWY
pentose phosphate pathway (non-oxidative branch) I
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NONOXIPENT-PWY
pentose phosphate pathway (non-oxidative branch) II
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PWY-8178
phenylethanol biosynthesis
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PWY-5751
phenylethylamine degradation I
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2PHENDEG-PWY
phenylpropanoid biosynthesis
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PWY-361
phenylpropanoids methylation (ice plant)
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PWY-7498
phosphatidylcholine resynthesis via glycerophosphocholine
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PWY-7367
phospholipases
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LIPASYN-PWY
phospholipid remodeling (phosphatidylethanolamine, yeast)
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PWY-7409
phosphopantothenate biosynthesis I
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PANTO-PWY
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
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PWY-7218
plasmalogen biosynthesis I (aerobic)
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PWY-7782
plasmalogen degradation
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PWY-7783
porphyran degradation
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PWY-6815
propanethial S-oxide biosynthesis
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PWY-5707
psilocybin biosynthesis
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PWY-7936
putrescine biosynthesis I
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PWY-40
putrescine biosynthesis II
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PWY-43
putrescine biosynthesis III
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PWY-46
putrescine degradation III
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PWY-0
pyrimidine deoxyribonucleosides salvage
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PWY-7199
pyruvate fermentation to (S)-lactate
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PWY-5481
reactive oxygen species degradation
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DETOX1-PWY-1
retinol biosynthesis
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PWY-6857
Rubisco shunt
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PWY-5723
S-adenosyl-L-methionine salvage II
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PWY-5041
salicylate biosynthesis I
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PWY-6406
salicylate biosynthesis II
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PWY-8321
salidroside biosynthesis
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PWY-6802
scopoletin biosynthesis
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PWY-6792
secologanin and strictosidine biosynthesis
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PWY-5290
sedoheptulose bisphosphate bypass
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PWY0-1517
seleno-amino acid biosynthesis (plants)
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PWY-6936
serotonin and melatonin biosynthesis
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PWY-6030
serotonin degradation
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PWY-6313
spermidine biosynthesis I
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BSUBPOLYAMSYN-PWY
spermidine biosynthesis II
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PWY-6559
spermidine biosynthesis III
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PWY-6834
spermine biosynthesis
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ARGSPECAT-PWY
sphingolipid biosynthesis (plants)
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PWY-5129
sphingolipid biosynthesis (yeast)
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SPHINGOLIPID-SYN-PWY
suberin monomers biosynthesis
succinate fermentation to butanoate
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PWY-5677
sucrose biosynthesis I (from photosynthesis)
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SUCSYN-PWY
sucrose degradation III (sucrose invertase)
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PWY-621
sucrose degradation V (sucrose alpha-glucosidase)
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PWY66-373
superoxide radicals degradation
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DETOX1-PWY
superpathway of glucose and xylose degradation
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PWY-6901
superpathway of methylsalicylate metabolism
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PWY18C3-25
superpathway of photosynthetic hydrogen production
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PWY-7731
taurine biosynthesis I
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PWY-5331
taurine biosynthesis II
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PWY-7850
tetrahydrofolate biosynthesis I
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PWY-6614
toluene degradation II (aerobic) (via 4-methylcatechol)
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TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
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TOLUENE-DEG-2-OH-PWY
triacylglycerol degradation
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LIPAS-PWY
tRNA processing
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PWY0-1479
urea cycle
urea degradation II
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PWY-5704
vanillin biosynthesis I
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PWY-5665
vitamin K-epoxide cycle
catecholamine biosynthesis
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PWY66-301
methylaspartate cycle
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PWY-6728
suberin monomers biosynthesis
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PWY-1121
urea cycle
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PWY-4984
vitamin K-epoxide cycle
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PWY-7999
LINKS TO OTHER DATABASES (specific for human gut metagenome)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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