Information on Organism Thermococcus kodakarensis

TaxTree of Organism Thermococcus kodakarensis
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EC NUMBER
COMMENTARY hide
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(5R)-carbapenem carboxylate biosynthesis
(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)
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(S)-lactate fermentation to propanoate, acetate and hydrogen
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(S)-propane-1,2-diol degradation
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1,3-propanediol biosynthesis (engineered)
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1,5-anhydrofructose degradation
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1-butanol autotrophic biosynthesis (engineered)
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1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)
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1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium)
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2'-deoxymugineic acid phytosiderophore biosynthesis
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2,2'-dihydroxybiphenyl degradation
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2,3-dihydroxybenzoate degradation
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2-deoxy-alpha-D-ribose 1-phosphate degradation
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2-deoxy-D-ribose degradation I
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2-deoxy-D-ribose degradation II
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2-methylpropene degradation
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2-oxobutanoate degradation II
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3-chlorocatechol degradation III (meta pathway)
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3-hydroxypropanoate cycle
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3-hydroxypropanoate/4-hydroxybutanate cycle
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3-methylbutanol biosynthesis (engineered)
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4-amino-3-hydroxybenzoate degradation
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4-aminobutanoate degradation V
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4-chloronitrobenzene degradation
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4-hydroxy-2(1H)-quinolone biosynthesis
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4-oxopentanoate degradation
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5'-deoxyadenosine degradation I
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6-hydroxymethyl-dihydropterin diphosphate biosynthesis
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6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
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6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium)
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7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
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8-amino-7-oxononanoate biosynthesis I
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acetaldehyde biosynthesis I
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acetate and ATP formation from acetyl-CoA II
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acetate conversion to acetyl-CoA
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acetate fermentation
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acetoacetate degradation (to acetyl CoA)
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acetyl CoA biosynthesis
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acetyl-CoA fermentation to butanoate II
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acetylene degradation (anaerobic)
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acridone alkaloid biosynthesis
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acrylonitrile degradation I
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adenine and adenosine salvage VI
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adenosine ribonucleotides de novo biosynthesis
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adlupulone and adhumulone biosynthesis
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aerobic respiration in cyanobacteria (NDH-2 to cytochrome c oxidase via plastocyanin)
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alanine metabolism
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Alanine, aspartate and glutamate metabolism
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all-trans-farnesol biosynthesis
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alpha-Linolenic acid metabolism
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alpha-tomatine degradation
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Amino sugar and nucleotide sugar metabolism
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Aminoacyl-tRNA biosynthesis
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Aminobenzoate degradation
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aminopropanol phosphate biosynthesis II
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ammonia assimilation cycle I
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ammonia assimilation cycle II
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anaerobic energy metabolism (invertebrates, cytosol)
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anaerobic energy metabolism (invertebrates, mitochondrial)
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archaeosine biosynthesis I
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archaeosine biosynthesis II
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Arginine and proline metabolism
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Arginine biosynthesis
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arginine dependent acid resistance
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arginine metabolism
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aspartate and asparagine metabolism
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Benzoate degradation
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bergamotene biosynthesis II
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beta-(1,4)-mannan degradation
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beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
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beta-alanine biosynthesis III
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beta-Alanine metabolism
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Bifidobacterium shunt
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Biosynthesis of secondary metabolites
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biotin biosynthesis
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Biotin metabolism
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bisabolene biosynthesis (engineered)
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brassicicene C biosynthesis
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butanoate fermentation
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Butanoate metabolism
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butanol and isobutanol biosynthesis (engineered)
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C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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C4 photosynthetic carbon assimilation cycle, NADP-ME type
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C4 photosynthetic carbon assimilation cycle, PEPCK type
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C5-Branched dibasic acid metabolism
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Calvin-Benson-Bassham cycle
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Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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catechol degradation to 2-hydroxypentadienoate II
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CDP-6-deoxy-D-gulose biosynthesis
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cellulose degradation
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cellulose degradation II (fungi)
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chitin biosynthesis
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chitin deacetylation
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chitin degradation I (archaea)
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chitin degradation II (Vibrio)
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chitin degradation III (Serratia)
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chitin derivatives degradation
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chitobiose degradation
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Chloroalkane and chloroalkene degradation
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cichoriin interconversion
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cis-geranyl-CoA degradation
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Citrate cycle (TCA cycle)
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citric acid cycle
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CMP phosphorylation
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CMP-legionaminate biosynthesis I
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CO2 fixation in Crenarchaeota
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CO2 fixation into oxaloacetate (anaplerotic)
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coenzyme A biosynthesis I (prokaryotic)
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coenzyme A biosynthesis II (eukaryotic)
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coenzyme A metabolism
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coenzyme B biosynthesis
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colupulone and cohumulone biosynthesis
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conversion of succinate to propanoate
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coumarin biosynthesis (via 2-coumarate)
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creatinine degradation
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creatinine degradation I
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creatinine degradation II
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crotonate fermentation (to acetate and cyclohexane carboxylate)
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crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
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Cyanoamino acid metabolism
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Cysteine and methionine metabolism
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cysteine metabolism
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cytidylyl molybdenum cofactor sulfurylation
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cytochrome c biogenesis (system I type)
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D-galactose degradation I (Leloir pathway)
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D-Glutamine and D-glutamate metabolism
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d-mannose degradation
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D-myo-inositol (1,4,5)-trisphosphate degradation
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D-sorbitol biosynthesis I
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dapdiamides biosynthesis
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daphnin interconversion
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degradation of aromatic, nitrogen containing compounds
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degradation of hexoses
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degradation of pentoses
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degradation of sugar alcohols
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di-myo-inositol phosphate biosynthesis
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diethylphosphate degradation
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Dioxin degradation
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dolichol and dolichyl phosphate biosynthesis
drosopterin and aurodrosopterin biosynthesis
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Drug metabolism - cytochrome P450
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Drug metabolism - other enzymes
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Entner Doudoroff pathway
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Entner-Doudoroff pathway I
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Entner-Doudoroff pathway II (non-phosphorylative)
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Entner-Doudoroff pathway III (semi-phosphorylative)
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erythro-tetrahydrobiopterin biosynthesis I
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ethanol degradation I
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ethanol degradation II
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ethanol degradation III
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ethanol degradation IV
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ethanol fermentation
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ethanolamine utilization
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ethene biosynthesis I (plants)
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ethene biosynthesis IV (engineered)
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ethene biosynthesis V (engineered)
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ethylmalonyl-CoA pathway
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Fatty acid degradation
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firefly bioluminescence
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Folate biosynthesis
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formaldehyde assimilation I (serine pathway)
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formaldehyde assimilation II (assimilatory RuMP Cycle)
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formaldehyde assimilation III (dihydroxyacetone cycle)
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formaldehyde oxidation I
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fructose 2,6-bisphosphate biosynthesis
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Fructose and mannose metabolism
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fusicoccin A biosynthesis
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GABA shunt
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Galactose metabolism
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GDP-alpha-D-glucose biosynthesis
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GDP-mannose biosynthesis
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geranylgeranyl diphosphate biosynthesis
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ginsenoside metabolism
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gluconeogenesis
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gluconeogenesis I
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gluconeogenesis II (Methanobacterium thermoautotrophicum)
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gluconeogenesis III
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glucose and glucose-1-phosphate degradation
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glucosylglycerol biosynthesis
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glutamate and glutamine metabolism
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glutaminyl-tRNAgln biosynthesis via transamidation
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glutaryl-CoA degradation
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Glutathione metabolism
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glycerol degradation I
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glycerol degradation to butanol
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Glycerolipid metabolism
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Glycerophospholipid metabolism
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glycine betaine degradation I
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glycine biosynthesis II
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glycine cleavage
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glycine metabolism
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Glycine, serine and threonine metabolism
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glycogen biosynthesis
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glycogen biosynthesis I (from ADP-D-Glucose)
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glycogen biosynthesis II (from UDP-D-Glucose)
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glycogen biosynthesis III (from alpha-maltose 1-phosphate)
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glycogen degradation I
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glycogen degradation II
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glycogen metabolism
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glycolysis
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Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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glycolysis II (from fructose 6-phosphate)
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glycolysis III (from glucose)
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glycolysis IV
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glycolysis V (Pyrococcus)
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Glyoxylate and dicarboxylate metabolism
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glyoxylate cycle
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guanosine ribonucleotides de novo biosynthesis
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heterolactic fermentation
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hydrogen oxidation I (aerobic)
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hydrogen oxidation II (aerobic, NAD)
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hydrogen oxidation III (anaerobic, NADP)
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hydrogen production
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hydrogen production II
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hydrogen production III
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hydrogen production IV
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hydrogen production VI
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hydrogen production VIII
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IAA biosynthesis
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incomplete reductive TCA cycle
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indole-3-acetate biosynthesis II
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indole-3-acetate biosynthesis III (bacteria)
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indole-3-acetate biosynthesis IV (bacteria)
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inosine-5'-phosphate biosynthesis I
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inosine-5'-phosphate biosynthesis II
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inosine-5'-phosphate biosynthesis III
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Inositol phosphate metabolism
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isoleucine metabolism
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isopenicillin N biosynthesis
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isoprene biosynthesis II (engineered)
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isoprenoid biosynthesis
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isopropanol biosynthesis (engineered)
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itaconate degradation
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ketogenesis
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ketolysis
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L-alanine biosynthesis II
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L-alanine degradation II (to D-lactate)
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L-alanine degradation III
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L-alanine degradation V (oxidative Stickland reaction)
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L-alanine degradation VI (reductive Stickland reaction)
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L-arginine biosynthesis I (via L-ornithine)
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L-arginine biosynthesis II (acetyl cycle)
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L-arginine biosynthesis IV (archaebacteria)
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L-arginine degradation III (arginine decarboxylase/agmatinase pathway)
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L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)
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L-arginine degradation X (arginine monooxygenase pathway)
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L-arginine degradation XIII (reductive Stickland reaction)
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L-arginine degradation XIV (oxidative Stickland reaction)
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L-asparagine biosynthesis I
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L-asparagine biosynthesis III (tRNA-dependent)
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L-asparagine degradation I
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L-asparagine degradation III (mammalian)
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L-carnitine degradation III
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L-citrulline biosynthesis
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L-citrulline degradation
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L-cysteine biosynthesis VIII (Thermococcus kodakarensis)
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L-glutamate biosynthesis I
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L-glutamate biosynthesis II
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L-glutamate biosynthesis III
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L-glutamate degradation I
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L-glutamate degradation IV
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L-glutamate degradation IX (via 4-aminobutanoate)
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L-glutamate degradation V (via hydroxyglutarate)
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L-glutamate degradation VII (to butanoate)
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L-glutamate degradation X
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L-glutamate degradation XI (reductive Stickland reaction)
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L-glutamine biosynthesis I
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L-glutamine biosynthesis III
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L-glutamine degradation I
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L-glutamine degradation II
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L-histidine degradation V
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L-isoleucine biosynthesis IV
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L-isoleucine biosynthesis V
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L-isoleucine degradation II
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L-isoleucine degradation III (oxidative Stickland reaction)
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L-lactaldehyde degradation
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L-leucine degradation III
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L-leucine degradation V (oxidative Stickland reaction)
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L-lysine biosynthesis IV
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L-lysine biosynthesis V
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L-lysine fermentation to acetate and butanoate
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L-malate degradation II
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L-methionine degradation I (to L-homocysteine)
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L-methionine degradation III
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L-Ndelta-acetylornithine biosynthesis
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L-ornithine biosynthesis II
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L-phenylalanine degradation III
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L-proline degradation I
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L-threonine degradation II
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L-threonine degradation III (to methylglyoxal)
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L-tryptophan biosynthesis
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L-tryptophan degradation V (side chain pathway)
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L-tyrosine degradation III
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L-valine degradation II
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L-valine degradation III (oxidative Stickland reaction)
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lactate fermentation
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leucine metabolism
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linamarin degradation
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linustatin bioactivation
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lipid A biosynthesis
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lipid IVA biosynthesis (E. coli)
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lipid IVA biosynthesis (P. putida)
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lipid metabolism
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lipoate biosynthesis
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lipoate biosynthesis and incorporation I
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lipoate biosynthesis and incorporation II
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lipoate biosynthesis and incorporation III (Bacillus)
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lipoate biosynthesis and incorporation IV (yeast)
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Lipoic acid metabolism
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Lipopolysaccharide biosynthesis
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lotaustralin degradation
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lupulone and humulone biosynthesis
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Lysine biosynthesis
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Lysine degradation
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lysine metabolism
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Metabolic pathways
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metabolism of amino sugars and derivatives
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metabolism of disaccharids
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Metabolism of xenobiotics by cytochrome P450
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Methane metabolism
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Methanobacterium thermoautotrophicum biosynthetic metabolism
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methanogenesis from CO2
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methanogenesis from H2 and CO2
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methanol oxidation to formaldehyde IV
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methionine metabolism
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methyl phomopsenoate biosynthesis
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methyl tert-butyl ether degradation
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methyl-coenzyme M oxidation to CO2
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methylaspartate cycle
methylerythritol phosphate pathway I
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methylerythritol phosphate pathway II
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methylwyosine biosynthesis
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mevalonate metabolism
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mevalonate pathway I (eukaryotes and bacteria)
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mevalonate pathway II (haloarchaea)
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mevalonate pathway III (Thermoplasma)
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mevalonate pathway IV (archaea)
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Microbial metabolism in diverse environments
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mixed acid fermentation
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molybdenum cofactor biosynthesis
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molybdopterin biosynthesis
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mono-trans, poly-cis decaprenyl phosphate biosynthesis
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mycothiol biosynthesis
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myo-inositol biosynthesis
N-acetylglucosamine degradation I
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N-Glycan biosynthesis
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NAD biosynthesis III (from nicotinamide)
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NAD de novo biosynthesis I (from aspartate)
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NAD metabolism
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NAD salvage pathway II (PNC IV cycle)
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NAD salvage pathway IV (from nicotinamide riboside)
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Naphthalene degradation
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neolinustatin bioactivation
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Nicotinate and nicotinamide metabolism
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nicotine biosynthesis
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nitrate reduction II (assimilatory)
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nitrate reduction V (assimilatory)
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nitrate reduction VI (assimilatory)
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Nitrogen metabolism
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Nitrotoluene degradation
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non-pathway related
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noradrenaline and adrenaline degradation
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nucleoside and nucleotide degradation (archaea)
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oleandomycin activation/inactivation
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oleate beta-oxidation
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One carbon pool by folate
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ophiobolin F biosynthesis
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orthanilate degradation
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Other glycan degradation
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Oxidative phosphorylation
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Pantothenate and CoA biosynthesis
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pantothenate biosynthesis
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partial TCA cycle (obligate autotrophs)
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paspaline biosynthesis
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Penicillin and cephalosporin biosynthesis
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Pentose phosphate pathway
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pentose phosphate pathway
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pentose phosphate pathway (non-oxidative branch) I
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pentose phosphate pathway (non-oxidative branch) II
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pentose phosphate pathway (oxidative branch) II
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periplasmic disulfide bond formation
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Phenazine biosynthesis
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phenol degradation
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Phenylalanine metabolism
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phenylalanine metabolism
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Phenylalanine, tyrosine and tryptophan biosynthesis
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phenylethanol biosynthesis
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Phenylpropanoid biosynthesis
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phosphatidylinositol biosynthesis I (bacteria)
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phospholipid remodeling (phosphatidylethanolamine, yeast)
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phosphopantothenate biosynthesis I
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phosphopantothenate biosynthesis II
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phosphopantothenate biosynthesis III (archaebacteria)
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photosynthesis
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photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
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phytate degradation I
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phytol degradation
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plaunotol biosynthesis
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polyamine pathway
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polyhydroxybutanoate biosynthesis
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polyphosphate metabolism
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preQ0 biosynthesis
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proline metabolism
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proline to cytochrome bo oxidase electron transfer
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Propanoate metabolism
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propanol degradation
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propanoyl CoA degradation I
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propionate fermentation
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protein N-glycosylation initial phase (eukaryotic)
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protocatechuate degradation III (para-cleavage pathway)
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Purine metabolism
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purine metabolism
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purine nucleobases degradation II (anaerobic)
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purine ribonucleosides degradation
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putrescine biosynthesis I
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putrescine biosynthesis II
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pyridoxal 5'-phosphate biosynthesis II
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pyrimidine deoxyribonucleosides degradation
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pyrimidine deoxyribonucleosides salvage
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pyrimidine deoxyribonucleotide phosphorylation
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pyrimidine deoxyribonucleotides biosynthesis from CTP
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Pyrimidine metabolism
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pyrimidine metabolism
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pyrimidine ribonucleosides salvage I
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pyruvate fermentation to (S)-lactate
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pyruvate fermentation to acetate I
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pyruvate fermentation to acetate III
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pyruvate fermentation to acetate IV
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pyruvate fermentation to acetate V
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pyruvate fermentation to acetate VI
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pyruvate fermentation to acetate VII
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pyruvate fermentation to acetone
-
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pyruvate fermentation to butanoate
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pyruvate fermentation to butanol I
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pyruvate fermentation to butanol II (engineered)
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pyruvate fermentation to ethanol I
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pyruvate fermentation to ethanol II
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pyruvate fermentation to ethanol III
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pyruvate fermentation to hexanol (engineered)
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pyruvate fermentation to isobutanol (engineered)
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pyruvate fermentation to propanoate I
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Pyruvate metabolism
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queuosine biosynthesis I (de novo)
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queuosine biosynthesis III (queuosine salvage)
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reactive oxygen species degradation
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reductive acetyl coenzyme A pathway II (autotrophic methanogens)
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reductive monocarboxylic acid cycle
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reductive TCA cycle I
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reductive TCA cycle II
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Retinol metabolism
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Riboflavin metabolism
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ribose phosphorylation
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ribulose monophosphate pathway
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rubber biosynthesis
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Rubisco shunt
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S-adenosyl-L-methionine biosynthesis
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S-adenosyl-L-methionine salvage I
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S-adenosyl-L-methionine salvage II
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S-methyl-5'-thioadenosine degradation II
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salidroside biosynthesis
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sedoheptulose bisphosphate bypass
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Selenocompound metabolism
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serotonin degradation
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spermidine biosynthesis I
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spermidine biosynthesis III
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Starch and sucrose metabolism
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starch biosynthesis
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starch degradation
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starch degradation II
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starch degradation III
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starch degradation IV
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starch degradation V
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stellatic acid biosynthesis
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streptomycin biosynthesis
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Streptomycin biosynthesis
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Styrene degradation
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sucrose biosynthesis I (from photosynthesis)
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sucrose biosynthesis II
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sucrose biosynthesis III
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sucrose degradation II (sucrose synthase)
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sucrose degradation III (sucrose invertase)
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sucrose degradation IV (sucrose phosphorylase)
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sucrose degradation V (sucrose alpha-glucosidase)
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sulfate reduction
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sulfopterin metabolism
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sulfur reduction III
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superoxide radicals degradation
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superpathway of coenzyme A biosynthesis III (mammals)
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superpathway of fermentation (Chlamydomonas reinhardtii)
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superpathway of glucose and xylose degradation
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superpathway of L-aspartate and L-asparagine biosynthesis
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superpathway of nicotine biosynthesis
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superpathway of photosynthetic hydrogen production
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Synthesis and degradation of ketone bodies
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Taurine and hypotaurine metabolism
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TCA cycle I (prokaryotic)
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TCA cycle II (plants and fungi)
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TCA cycle III (animals)
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TCA cycle IV (2-oxoglutarate decarboxylase)
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TCA cycle V (2-oxoglutarate synthase)
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TCA cycle VI (Helicobacter)
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TCA cycle VII (acetate-producers)
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Terpenoid backbone biosynthesis
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tetrahydrofolate metabolism
-
-
tetrahydromonapterin biosynthesis
-
-
thiamine diphosphate biosynthesis I (E. coli)
-
-
thiamine diphosphate biosynthesis II (Bacillus)
-
-
thiamine diphosphate salvage I
-
-
thiamine diphosphate salvage II
-
-
Thiamine metabolism
-
-
threo-tetrahydrobiopterin biosynthesis
-
-
threonine metabolism
-
-
trans, trans-farnesyl diphosphate biosynthesis
-
-
trehalose biosynthesis IV
-
-
trehalose biosynthesis V
-
-
trehalose degradation V
-
-
tRNA charging
-
-
tRNA methylation (yeast)
-
-
tRNA processing
-
-
tRNA splicing I
-
-
tRNA splicing II
-
-
Tryptophan metabolism
-
-
tryptophan metabolism
-
-
Tyrosine metabolism
-
-
tyrosine metabolism
-
-
Ubiquinone and other terpenoid-quinone biosynthesis
-
-
UDP-alpha-D-glucose biosynthesis
-
-
UDP-GlcNAc biosynthesis
-
-
UDP-N-acetyl-D-galactosamine biosynthesis II
-
-
UDP-N-acetyl-D-galactosamine biosynthesis III
-
-
UDP-N-acetyl-D-glucosamine biosynthesis I
-
-
UDP-N-acetyl-D-glucosamine biosynthesis II
-
-
UMP biosynthesis I
-
-
UMP biosynthesis II
-
-
UMP biosynthesis III
-
-
urea cycle
UTP and CTP de novo biosynthesis
-
-
UTP and CTP dephosphorylation I
-
-
UTP and CTP dephosphorylation II
-
-
valine metabolism
-
-
Valine, leucine and isoleucine biosynthesis
-
-
Valine, leucine and isoleucine degradation
-
-
valproate beta-oxidation
-
-
Various types of N-glycan biosynthesis
-
-
vitamin B1 metabolism
-
-
Vitamin B6 metabolism
-
-
vitamin B6 metabolism
-
-
vitamin K-epoxide cycle
-
-
Xylene degradation
-
-
[2Fe-2S] iron-sulfur cluster biosynthesis
-
-
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
additional information
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
LINKS TO OTHER DATABASES (specific for Thermococcus kodakarensis)