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Information on Organism Sphingobium yanoikuyae

Synonyms:
ATCC 51230; Beijerinckia sp. B1; CCUG 28380; CCUG 31205; CIP 106726; DSM 7462; GIFU 9882; GIFU:9882; HAMBI 1842; IFO 15102; JCM 7371; LMG 11252; LMG:11252; NBRC 15102; Sphingobium sp. TJ; Sphingobium yanoikuyae; Sphingobium yanoikuyae (Yabuuchi et al. 1990) Takeuchi et al. 2001; Sphingomonas yanoikuyae; Sphingomonas yanoikuyae Yabuuchi et al. 1990; Beijerinckia B1;
Word Map for Organism Sphingobium yanoikuyae
TaxTree of Organism Sphingobium yanoikuyae
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Alphaproteobacteria can be found in Brenda BRENDA pathways(class)
Sphingomonadales can be found in Brenda BRENDA pathways(order)
Sphingomonadaceae can be found in Brenda BRENDA pathways(family)
Sphingobium can be found in Brenda BRENDA pathways(genus)
Sphingobium yanoikuyae can be found in Brenda BRENDA pathways(species)
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EC NUMBER
COMMENTARY hide
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(R)-camphor degradation
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-
P601-PWY
(S)-camphor degradation
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-
PWY-6989
(S)-propane-1,2-diol degradation
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-
PWY-7013
1,5-anhydrofructose degradation
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-
PWY-6992
2-hydroxybiphenyl degradation
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-
PWY-7008
2-nitrobenzoate degradation II
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PWY-5648
2-nitrotoluene degradation
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-
PWY-5641
3-methylbutanol biosynthesis (engineered)
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-
PWY-6871
4-hydroxy-2-nonenal detoxification
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PWY-7112
acetaldehyde biosynthesis I
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PWY-6333
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acetylene degradation (anaerobic)
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P161-PWY
aerobic toluene degradation
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-
allopregnanolone biosynthesis
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-
PWY-7455
alpha-Linolenic acid metabolism
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-
Amaryllidacea alkaloids biosynthesis
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-
PWY-7826
Aminobenzoate degradation
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-
anthranilate degradation I (aerobic)
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-
PWY-6079
Arachidonic acid metabolism
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-
arachidonic acid metabolism
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-
Ascorbate and aldarate metabolism
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-
Atrazine degradation
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-
atrazine degradation I (aerobic)
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P141-PWY
backdoor pathway of androgen biosynthesis
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-
PWY-8200
Benzoate degradation
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-
benzoate degradation I (aerobic)
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PWY-2503
bile acid biosynthesis, neutral pathway
Biosynthesis of secondary metabolites
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-
biphenyl degradation
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-
PWY5F9-12
bupropion degradation
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-
PWY66-241
butanol and isobutanol biosynthesis (engineered)
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-
PWY-7396
Caffeine metabolism
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-
camalexin biosynthesis
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-
CAMALEXIN-SYN
camphor degradation
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carbaryl degradation
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-
PWY-8111
carbazole degradation
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-
PWY-6550
Carbon fixation pathways in prokaryotes
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-
catechol degradation to 2-hydroxypentadienoate I
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P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
Chloroalkane and chloroalkene degradation
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Chlorocyclohexane and chlorobenzene degradation
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-
Citrate cycle (TCA cycle)
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-
citric acid cycle
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-
cytosolic NADPH production (yeast)
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PWY-7268
degradation of aromatic, nitrogen containing compounds
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Dioxin degradation
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-
diphenyl ethers degradation
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PWY-7747
Drug metabolism - cytochrome P450
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-
Drug metabolism - other enzymes
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-
ethanol degradation I
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ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
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-
PWY66-21
ethanol degradation IV
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-
PWY66-162
ethanol fermentation
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-
ethanolamine utilization
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PWY0-1477
ethene biosynthesis V (engineered)
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PWY-7124
Ethylbenzene degradation
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Fatty acid degradation
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Fluorobenzoate degradation
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-
Folate biosynthesis
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-
gliotoxin biosynthesis
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-
PWY-7533
Glutathione metabolism
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-
glutathione metabolism
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-
glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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-
PWY-6842
Glycine, serine and threonine metabolism
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-
Glycolysis / Gluconeogenesis
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-
Glyoxylate and dicarboxylate metabolism
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-
gossypol biosynthesis
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PWY-5773
heme degradation I
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PWY-5874
heterolactic fermentation
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P122-PWY
indole glucosinolate activation (intact plant cell)
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PWYQT-4477
justicidin B biosynthesis
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-
PWY-6824
L-isoleucine degradation II
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PWY-5078
L-leucine degradation III
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PWY-5076
L-methionine degradation III
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PWY-5082
L-phenylalanine degradation III
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PWY-5079
L-tryptophan degradation V (side chain pathway)
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PWY-3162
L-tyrosine degradation III
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PWY3O-4108
L-valine degradation II
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PWY-5057
leucine metabolism
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-
Linoleic acid metabolism
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-
lipid A biosynthesis
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-
lipid A-core biosynthesis (E. coli K-12)
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LIPA-CORESYN-PWY
lipid metabolism
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-
manganese oxidation I
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PWY-6591
matairesinol biosynthesis
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-
PWY-5466
melatonin degradation I
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-
PWY-6398
Metabolic pathways
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-
Metabolism of xenobiotics by cytochrome P450
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-
methanol oxidation to formaldehyde IV
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-
PWY-5506
methionine metabolism
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-
methyl indole-3-acetate interconversion
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-
PWY-6303
methylaspartate cycle
methylsalicylate degradation
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-
PWY18C3-24
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
Monoterpenoid biosynthesis
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Naphthalene degradation
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naphthalene degradation (aerobic)
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-
PWY-5427
nicotine degradation IV
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PWY66-201
nicotine degradation V
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-
PWY66-221
nitrogen remobilization from senescing leaves
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-
PWY-6549
non-pathway related
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-
noradrenaline and adrenaline degradation
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PWY-6342
oxidative phosphorylation
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-
partial TCA cycle (obligate autotrophs)
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-
PWY-5913
pectin degradation I
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-
PWY-7246
pectin degradation II
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-
PWY-7248
pentachlorophenol degradation
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-
PCPDEG-PWY
Pentose and glucuronate interconversions
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-
phenol degradation
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-
phenylalanine metabolism
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-
phenylethanol biosynthesis
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-
PWY-5751
photosynthesis
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-
phytol degradation
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-
PWY66-389
Polycyclic aromatic hydrocarbon degradation
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Porphyrin and chlorophyll metabolism
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-
propanol degradation
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-
pyruvate fermentation to ethanol I
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PWY-5480
pyruvate fermentation to ethanol II
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PWY-5486
pyruvate fermentation to ethanol III
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PWY-6587
pyruvate fermentation to isobutanol (engineered)
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PWY-7111
Pyruvate metabolism
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-
reactive oxygen species degradation
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-
DETOX1-PWY-1
reductive TCA cycle I
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P23-PWY
retinol biosynthesis
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-
PWY-6857
Retinol metabolism
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-
salidroside biosynthesis
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PWY-6802
saponin biosynthesis II
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-
PWY-5756
serotonin degradation
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PWY-6313
serotonin metabolism
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-
sesamin biosynthesis
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-
PWY-5469
Steroid hormone biosynthesis
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Styrene degradation
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-
superoxide radicals degradation
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-
DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of methylsalicylate metabolism
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PWY18C3-25
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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-
REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
testosterone and androsterone degradation to androstendione (aerobic)
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-
PWY-6943
thyroid hormone metabolism II (via conjugation and/or degradation)
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-
PWY-6261
Toluene degradation
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toluene degradation II (aerobic) (via 4-methylcatechol)
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TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
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TOLUENE-DEG-2-OH-PWY
Tryptophan metabolism
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Tyrosine metabolism
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-
tyrosine metabolism
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-
valine metabolism
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-
vanillin biosynthesis I
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-
PWY-5665
Xylene degradation
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LINKS TO OTHER DATABASES (specific for Sphingobium yanoikuyae)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA