Information on Organism Shewanella oneidensis

TaxTree of Organism Shewanella oneidensis
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EC NUMBER
COMMENTARY hide
deleted, the activty is included in EC 1.3.5.1, succinate dehydrogenase (quinone)
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-propane-1,2-diol degradation
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3-methylbutanol biosynthesis (engineered)
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acetaldehyde biosynthesis I
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acetylene degradation (anaerobic)
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alpha-Linolenic acid metabolism
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Biosynthesis of secondary metabolites
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butanol and isobutanol biosynthesis (engineered)
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chitin degradation to ethanol
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Chloroalkane and chloroalkene degradation
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Drug metabolism - cytochrome P450
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ethanol degradation I
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ethanol degradation II
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ethanol fermentation
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ethanolamine utilization
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Fatty acid degradation
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Glycine, serine and threonine metabolism
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Glycolysis / Gluconeogenesis
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heterolactic fermentation
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L-isoleucine degradation II
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L-leucine degradation III
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L-methionine degradation III
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L-phenylalanine degradation III
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L-tryptophan degradation V (side chain pathway)
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L-tyrosine degradation III
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L-valine degradation II
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leucine metabolism
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Metabolic pathways
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Metabolism of xenobiotics by cytochrome P450
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methionine metabolism
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Microbial metabolism in diverse environments
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mixed acid fermentation
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Naphthalene degradation
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noradrenaline and adrenaline degradation
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phenylalanine metabolism
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phenylethanol biosynthesis
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phytol degradation
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propanol degradation
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pyruvate fermentation to ethanol I
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pyruvate fermentation to ethanol II
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pyruvate fermentation to ethanol III
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pyruvate fermentation to isobutanol (engineered)
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Retinol metabolism
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salidroside biosynthesis
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serotonin degradation
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superpathway of fermentation (Chlamydomonas reinhardtii)
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Tyrosine metabolism
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tyrosine metabolism
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valine metabolism
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D-glucuronate degradation I
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L-arabinose degradation II
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Pentose and glucuronate interconversions
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(S)-lactate fermentation to propanoate, acetate and hydrogen
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Bifidobacterium shunt
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Cysteine and methionine metabolism
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L-lactaldehyde degradation
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lactate fermentation
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Propanoate metabolism
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pyruvate fermentation to (S)-lactate
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Pyruvate metabolism
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superpathway of glucose and xylose degradation
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alanine metabolism
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L-alanine degradation II (to D-lactate)
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vancomycin resistance I
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anaerobic energy metabolism (invertebrates, cytosol)
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C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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Citrate cycle (TCA cycle)
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citric acid cycle
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formaldehyde assimilation I (serine pathway)
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gluconeogenesis I
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gluconeogenesis III
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Glyoxylate and dicarboxylate metabolism
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glyoxylate cycle
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incomplete reductive TCA cycle
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malate/L-aspartate shuttle pathway
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Methane metabolism
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methylaspartate cycle
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partial TCA cycle (obligate autotrophs)
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pyruvate fermentation to propanoate I
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reductive TCA cycle I
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reductive TCA cycle II
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superpathway of glyoxylate cycle and fatty acid degradation
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TCA cycle I (prokaryotic)
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TCA cycle II (plants and fungi)
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TCA cycle III (animals)
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TCA cycle IV (2-oxoglutarate decarboxylase)
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TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
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C5-Branched dibasic acid metabolism
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isoleucine metabolism
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Valine, leucine and isoleucine biosynthesis
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Steroid hormone biosynthesis
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glycine metabolism
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photorespiration
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CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis
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CMP-KDO biosynthesis
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acetate fermentation
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acetyl-CoA biosynthesis II (NADP-dependent pyruvate dehydrogenase)
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oxidative decarboxylation of pyruvate
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2-oxoglutarate decarboxylation to succinyl-CoA
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Lysine degradation
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Tryptophan metabolism
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vitamin B1 metabolism
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Phenylalanine metabolism
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Porphyrin and chlorophyll metabolism
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aerobic respiration I (cytochrome c)
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aerobic respiration II (cytochrome c) (yeast)
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aerobic respiration III (alternative oxidase pathway)
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Butanoate metabolism
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Oxidative phosphorylation
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propionate fermentation
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succinate to cytochrome bd oxidase electron transfer
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succinate to cytochrome bo oxidase electron transfer
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TCA cycle VII (acetate-producers)
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3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
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heme b biosynthesis II (oxygen-independent)
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heme metabolism
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Histidine metabolism
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methylamine degradation I
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non-pathway related
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superpathway of photosynthetic hydrogen production
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Ubiquinone and other terpenoid-quinone biosynthesis
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vitamin K-epoxide cycle
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nitrate reduction II (assimilatory)
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Nitrogen metabolism
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formate to nitrite electron transfer
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nitrate reduction IV (dissimilatory)
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nitrate reduction I (denitrification)
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nitrate reduction III (dissimilatory)
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nitrate reduction IX (dissimilatory)
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nitrate reduction VII (denitrification)
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nitrate reduction VIII (dissimilatory)
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nitrate reduction VIIIb (dissimilatory)
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nitrate assimilation
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assimilatory sulfate reduction I
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assimilatory sulfate reduction III
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sulfate reduction
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Sulfur metabolism
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Glutathione metabolism
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formate to dimethyl sulfoxide electron transfer
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hydrogen to dimethyl sulfoxide electron transfer
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NADH to dimethyl sulfoxide electron transfer
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thiosulfate disproportionation III (quinone)
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dissimilatory sulfate reduction I (to hydrogen sufide))
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dissimilatory sulfate reduction II (to thiosulfate)
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Nitrotoluene degradation
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superpathway of tetrathionate reduction (Salmonella typhimurium)
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superpathway of thiosulfate metabolism (Desulfovibrio sulfodismutans)
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nitrate reduction X (dissimilatory, periplasmic)
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ethanol degradation IV
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methanol oxidation to formaldehyde IV
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reactive oxygen species degradation
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superoxide radicals degradation
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baicalein degradation (hydrogen peroxide detoxification)
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betanidin degradation
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justicidin B biosynthesis
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luteolin triglucuronide degradation
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matairesinol biosynthesis
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Phenylpropanoid biosynthesis
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sesamin biosynthesis
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Arachidonic acid metabolism
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arachidonic acid metabolism
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glutathione-peroxide redox reactions
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hydrogen production
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hydrogen production III
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hydrogen production VI
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hydrogen production VIII
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L-glutamate degradation VII (to butanoate)
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hydrogen oxidation I (aerobic)
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L-tyrosine degradation I
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Styrene degradation
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3-hydroxy-4-methyl-anthranilate biosynthesis I
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3-hydroxy-4-methyl-anthranilate biosynthesis II
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L-tryptophan degradation I (via anthranilate)
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L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
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L-tryptophan degradation XI (mammalian, via kynurenine)
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tryptophan metabolism
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L-phenylalanine degradation IV (mammalian, via side chain)
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plastoquinol-9 biosynthesis I
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vitamin E biosynthesis (tocopherols)
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1,5-anhydrofructose degradation
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acetone degradation I (to methylglyoxal)
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acetone degradation III (to propane-1,2-diol)
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Amaryllidacea alkaloids biosynthesis
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Aminobenzoate degradation
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bupropion degradation
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Caffeine metabolism
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Linoleic acid metabolism
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melatonin degradation I
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nicotine degradation IV
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nicotine degradation V
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vanillin biosynthesis I
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phenylmercury acetate degradation
ethylene biosynthesis III (microbes)
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iron reduction and absorption
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Fe(II) oxidation
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formate oxidation to CO2
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oxalate degradation III
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oxalate degradation VI
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purine nucleobases degradation I (anaerobic)
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purine nucleobases degradation II (anaerobic)
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reductive acetyl coenzyme A pathway
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Photosynthesis
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photosynthesis light reactions
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tetrachloroethene degradation
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Cyanoamino acid metabolism
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folate polyglutamylation
folate transformations I
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folate transformations II (plants)
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folate transformations III (E. coli)
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glycine betaine degradation I
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glycine betaine degradation II (mammalian)
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glycine biosynthesis I
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One carbon pool by folate
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purine metabolism
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acetoin degradation
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L-isoleucine biosynthesis I (from threonine)
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L-isoleucine biosynthesis II
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L-isoleucine biosynthesis III
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L-isoleucine biosynthesis IV
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L-valine biosynthesis
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Pantothenate and CoA biosynthesis
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pyruvate fermentation to (R)-acetoin I
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pyruvate fermentation to (R)-acetoin II
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pyruvate fermentation to (S)-acetoin
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acetate and ATP formation from acetyl-CoA I
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gallate degradation III (anaerobic)
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L-lysine fermentation to acetate and butanoate
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methanogenesis from acetate
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pyruvate fermentation to acetate II
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pyruvate fermentation to acetate IV
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sulfoacetaldehyde degradation I
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sulfolactate degradation II
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Taurine and hypotaurine metabolism
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(5Z)-dodecenoate biosynthesis I
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(5Z)-dodecenoate biosynthesis II
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8-amino-7-oxononanoate biosynthesis I
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arachidonate biosynthesis
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Biotin metabolism
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Fatty acid biosynthesis
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fatty acid biosynthesis initiation (mitochondria)
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fatty acid elongation -- saturated
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gondoate biosynthesis (anaerobic)
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lipid metabolism
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mycolate biosynthesis
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myristate biosynthesis (mitochondria)
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octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
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oleate biosynthesis IV (anaerobic)
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palmitate biosynthesis
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palmitate biosynthesis II (bacteria and plant cytoplasm)
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palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
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stearate biosynthesis II (bacteria and plants)
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superpathway of fatty acid biosynthesis initiation (E. coli)
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superpathway of mycolate biosynthesis
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-
reductive monocarboxylic acid cycle
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threonine metabolism
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fatty acid biosynthesis initiation (animals and fungi, cytoplasm)
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palmitate biosynthesis (animals and fungi, cytoplasm)
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Biosynthesis of 12-, 14- and 16-membered macrolides
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erythromycin D biosynthesis
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cis-vaccenate biosynthesis
petroselinate biosynthesis
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fatty acid biosynthesis initiation (bacteria and plants)
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ethylene biosynthesis V (engineered)
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L-glutamine biosynthesis III
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TCA cycle VI (Helicobacter)
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lipid A biosynthesis
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lipid A-core biosynthesis (E. coli K-12)
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Drug metabolism - other enzymes
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nucleoside and nucleotide degradation (archaea)
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pyrimidine deoxyribonucleosides degradation
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Pyrimidine metabolism
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pyrimidine metabolism
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pyrimidine ribonucleosides degradation
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2'-deoxymugineic acid phytosiderophore biosynthesis
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ethylene biosynthesis I (plants)
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L-methionine degradation I (to L-homocysteine)
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S-adenosyl-L-methionine biosynthesis
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S-adenosyl-L-methionine cycle II
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4-hydroxy-2-nonenal detoxification
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camalexin biosynthesis
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gliotoxin biosynthesis
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glutathione metabolism
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glutathione-mediated detoxification I
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glutathione-mediated detoxification II
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indole glucosinolate activation (intact plant cell)
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pentachlorophenol degradation
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Acarbose and validamycin biosynthesis
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dTDP-D-desosamine biosynthesis
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dTDP-N-acetylviosamine biosynthesis
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dTDPLrhamnose biosynthesis
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Polyketide sugar unit biosynthesis
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D-arabitol degradation
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D-xylose degradation I
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degradation of sugar alcohols
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xylitol degradation
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Amino sugar and nucleotide sugar metabolism
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chitin derivatives degradation
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N-acetylglucosamine degradation II
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anhydromuropeptides recycling I
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anhydromuropeptides recycling II
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glycine degradation (Stickland reaction)
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L-threonine degradation I
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Arginine and proline metabolism
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creatine-phosphate biosynthesis
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gluconeogenesis
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gluconeogenesis II (Methanobacterium thermoautotrophicum)
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glycolysis I (from glucose 6-phosphate)
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glycolysis II (from fructose 6-phosphate)
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glycolysis V (Pyrococcus)
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ketolysis
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Synthesis and degradation of ketone bodies
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Valine, leucine and isoleucine degradation
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acetoacetate degradation (to acetyl CoA)
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pyruvate fermentation to acetone
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methyl indole-3-acetate interconversion
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methylsalicylate degradation
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retinol biosynthesis
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superpathway of methylsalicylate metabolism
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Glycerolipid metabolism
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triacylglycerol degradation
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acyl-CoA hydrolysis
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bacterial bioluminescence
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Biosynthesis of unsaturated fatty acids
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cutin biosynthesis
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Fatty acid elongation
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oleate biosynthesis II (animals and fungi)
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sporopollenin precursors biosynthesis
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stearate biosynthesis I (animals)
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stearate biosynthesis III (fungi)
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suberin monomers biosynthesis
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adenosine nucleotides degradation I
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adenosine nucleotides degradation II
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guanosine nucleotides degradation I
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guanosine nucleotides degradation II
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guanosine nucleotides degradation III
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inosine 5'-phosphate degradation
-
-
NAD metabolism
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NAD salvage pathway III (to nicotinamide riboside)
-
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Nicotinate and nicotinamide metabolism
-
-
Purine metabolism
-
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pyridine nucleotide cycling (plants)
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-
tunicamycin biosynthesis
-
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UTP and CTP dephosphorylation I
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-
Inositol phosphate metabolism
-
-
myo-inositol biosynthesis
-
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phenol degradation
-
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phytate degradation I
-
-
2-arachidonoylglycerol biosynthesis
-
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Ether lipid metabolism
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Glycerophospholipid metabolism
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phospholipases
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plasmalogen biosynthesis
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plasmalogen degradation
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acyl carrier protein metabolism
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cellulose degradation
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cellulose degradation II (fungi)
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Starch and sucrose metabolism
-
-
Peptidoglycan biosynthesis
-
-
peptidoglycan biosynthesis
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peptidoglycan biosynthesis II (staphylococci)
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peptidoglycan biosynthesis IV (Enterococcus faecium)
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peptidoglycan maturation (meso-diaminopimelate containing)
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nocardicin A biosynthesis
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lipoprotein posttranslational modification
-
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acrylonitrile degradation I
-
-
arginine metabolism
-
-
degradation of aromatic, nitrogen containing compounds
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IAA biosynthesis
-
-
indole-3-acetate biosynthesis II
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indole-3-acetate biosynthesis III (bacteria)
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-
indole-3-acetate biosynthesis IV (bacteria)
-
-
L-arginine degradation X (arginine monooxygenase pathway)
-
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Penicillin and cephalosporin biosynthesis
-
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Arginine biosynthesis
-
-
L-arginine biosynthesis III (via N-acetyl-L-citrulline)
-
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L-ornithine biosynthesis I
-
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NAD salvage pathway II (PNC IV cycle)
-
-
lipid IVA biosynthesis (E. coli)
-
-
lipid IVA biosynthesis (P. putida)
-
-
Lipopolysaccharide biosynthesis
-
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formaldehyde oxidation VII (THF pathway)
-
-
formate assimilation into 5,10-methylenetetrahydrofolate
-
-
histidine metabolism
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-
L-histidine degradation III
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reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
-
-
tetrahydrofolate metabolism
-
-
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
-
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6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
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flavin biosynthesis
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flavin biosynthesis I (bacteria and plants)
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flavin biosynthesis III (fungi)
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Folate biosynthesis
-
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Riboflavin metabolism
-
-
toxoflavin biosynthesis
-
-
acetaldehyde biosynthesis II
-
-
long chain fatty acid ester synthesis (engineered)
-
-
pyruvate fermentation to acetate VIII
-
-
pyruvate fermentation to acetoin III
-
-
aminopropylcadaverine biosynthesis
-
-
bisucaberin biosynthesis
-
-
cadaverine biosynthesis
-
-
desferrioxamine B biosynthesis
-
-
desferrioxamine E biosynthesis
-
-
L-lysine degradation I
-
-
L-lysine degradation X
-
-
lupanine biosynthesis
-
-
lysine metabolism
-
-
Tropane, piperidine and pyridine alkaloid biosynthesis
-
-
arginine dependent acid resistance
-
-
L-arginine degradation III (arginine decarboxylase/agmatinase pathway)
-
-
L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)
-
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polyamine pathway
-
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putrescine biosynthesis I
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putrescine biosynthesis II
-
-
spermidine biosynthesis III
-
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flavin biosynthesis II (archaea)
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cysteine metabolism
-
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homocysteine and cysteine interconversion
-
-
hydrogen sulfide biosynthesis II (mammalian)
-
-
L-cysteine biosynthesis III (from L-homocysteine)
-
-
L-cysteine biosynthesis VI (from L-methionine)
-
-
2-methylcitrate cycle I
-
-
2-methylcitrate cycle II
-
-
autoinducer AI-2 biosynthesis I
-
-
autoinducer AI-2 biosynthesis II (Vibrio)
-
-
S-adenosyl-L-methionine cycle I
-
-
isoprenoid biosynthesis
-
-
methylerythritol phosphate pathway I
-
-
methylerythritol phosphate pathway II
-
-
Terpenoid backbone biosynthesis
-
-
heme b biosynthesis I (aerobic)
-
-
superpathway of heme b biosynthesis from uroporphyrinogen-III
-
-
L-ornithine degradation II (Stickland reaction)
-
-
proline metabolism
-
-
L-lysine biosynthesis I
-
-
L-lysine biosynthesis II
-
-
L-lysine biosynthesis VI
-
-
Lysine biosynthesis
-
-
Fructose and mannose metabolism
-
-
itaconate biosynthesis II
-
-
echinatin biosynthesis
-
-
flavonoid biosynthesis
-
-
Flavonoid biosynthesis
-
-
flavonoid biosynthesis (in equisetum)
-
-
flavonoid di-C-glucosylation
-
-
isoflavonoid biosynthesis I
-
-
naringenin biosynthesis (engineered)
-
-
pinobanksin biosynthesis
-
-
Aminoacyl-tRNA biosynthesis
-
-
tRNA charging
-
-
cis-alkene biosynthesis
-
-
hentriaconta-3,6,9,12,15,19,22,25,28-nonaene biosynthesis
-
-
acetate conversion to acetyl-CoA
-
-
adlupulone and adhumulone biosynthesis
-
-
cis-genanyl-CoA degradation
-
-
colupulone and cohumulone biosynthesis
-
-
ethanol degradation III
-
-
L-isoleucine biosynthesis V
-
-
lupulone and humulone biosynthesis
-
-
itaconate degradation
-
-
NAD/NADH phosphorylation and dephosphorylation
-
-
NADH to cytochrome bd oxidase electron transfer I
-
-
NADH to cytochrome bo oxidase electron transfer I
-
-
oxidative phosphorylation
-
-
D-lactate to cytochrome bo oxidase electron transfer
-
-
glycerol-3-phosphate to cytochrome bo oxidase electron transfer
-
-
NADH to cytochrome bo oxidase electron transfer II
-
-
proline to cytochrome bo oxidase electron transfer
-
-
pyruvate to cytochrome bo oxidase electron transfer
-
-
ammonia oxidation IV (autotrophic ammonia oxidizers)
-
-
arsenite oxidation I (respiratory)
-
-
ATP biosynthesis
-
-
ORGANISM
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LITERATURE
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LINKS TO OTHER DATABASES (specific for Shewanella oneidensis)