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Information on Organism Shewanella putrefaciens

Synonyms:
Alteromonas putrefaciens (ex Derby and Hammer) Lee et al. 1981; Alteromonas putrefaciens; ATCC 8071; CCUG 13452 D; CFBP 3033; CFBP 3034; CIP 80.40; DSM 6067; IFO 3908; JCM 20190; JCM 9294; LMG 2268; LMG:2268; NBRC 3908; NCIB 10471; NCIB:10471; NCIMB 10471; NCTC 12960; "Pseudomonas putrefaciens" (Derby and Hammer) Long and Hammer 1941; Pseudomonas putrefaciens; Shewanella putrefaciens (Lee et al. 1981) MacDonell and Colwell 1986 emend. Thorell et al. 2019; Shewanella putrefaciens; strain Hammer 95; Alteromonas putrifaciens; Shewanella putrefaciens (Lee et al. 1981) MacDonell and Colwell 1986; Shewanella putrifaciens;
Word Map for Organism Shewanella putrefaciens
TaxTree of Organism Shewanella putrefaciens
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Gammaproteobacteria can be found in Brenda BRENDA pathways(class)
Alteromonadales can be found in Brenda BRENDA pathways(order)
Shewanellaceae can be found in Brenda BRENDA pathways(family)
Shewanella can be found in Brenda BRENDA pathways(genus)
Shewanella putrefaciens can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(aminomethyl)phosphonate degradation
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PWY-7805
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
1,3-propanediol biosynthesis (engineered)
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PWY-7385
1,5-anhydrofructose degradation
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-
PWY-6992
1-butanol autotrophic biosynthesis (engineered)
-
-
PWY-6886
2-methylcitrate cycle I
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-
PWY0-42
2-methylcitrate cycle II
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PWY-5747
3-dehydroquinate biosynthesis I
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-
PWY-6164
4-aminobutanoate degradation V
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PWY-5022
adenine and adenosine salvage I
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-
P121-PWY
adenine and adenosine salvage III
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-
PWY-6609
adenine and adenosine salvage V
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-
PWY-6611
adenosine nucleotides degradation I
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-
PWY-6596
adenosine nucleotides degradation II
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SALVADEHYPOX-PWY
aerobic respiration I (cytochrome c)
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-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
alanine metabolism
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Alanine, aspartate and glutamate metabolism
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-
alpha-linolenate metabolites biosynthesis
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PWY-8398
alpha-Linolenic acid metabolism
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-
Amino sugar and nucleotide sugar metabolism
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-
ammonia oxidation II (anaerobic)
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-
P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
anandamide biosynthesis I
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PWY-8051
anandamide biosynthesis II
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-
PWY-8053
apratoxin A biosynthesis
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-
PWY-8361
arachidonate metabolites biosynthesis
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PWY-8397
Arachidonic acid metabolism
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Arginine and proline metabolism
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-
Arginine biosynthesis
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arsenic detoxification (mammals)
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PWY-4202
arsenite to oxygen electron transfer
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PWY-4521
arsenite to oxygen electron transfer (via azurin)
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PWY-7429
aspirin triggered resolvin D biosynthesis
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PWY66-395
aspirin triggered resolvin E biosynthesis
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PWY66-394
baicalein degradation (hydrogen peroxide detoxification)
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PWY-7214
beta-Alanine metabolism
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-
betanidin degradation
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-
PWY-5461
Bifidobacterium shunt
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-
P124-PWY
Biosynthesis of secondary metabolites
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-
Butanoate metabolism
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-
C4 and CAM-carbon fixation
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-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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cellulose degradation
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cellulose degradation II (fungi)
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PWY-6788
chitin biosynthesis
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PWY-6981
chorismate metabolism
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-
Citrate cycle (TCA cycle)
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-
citric acid cycle
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-
CMP-3-deoxy-D-manno-octulosonate biosynthesis
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PWY-1269
CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis
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PWY-7674
CMP-KDO biosynthesis
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-
creatine phosphate biosynthesis
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-
PWY-6158
curacin A biosynthesis
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-
PWY-8358
Cysteine and methionine metabolism
-
-
D-sorbitol biosynthesis I
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-
PWY-5054
denitrification
-
-
di-homo-gamma-linolenate metabolites biosynthesis
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-
PWY-8396
diethylphosphate degradation
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PWY-5491
docosahexaenoate metabolites biosynthesis
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PWY-8400
Drug metabolism - other enzymes
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-
dTMP de novo biosynthesis (mitochondrial)
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-
PWY66-385
Entner-Doudoroff pathway I
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PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
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NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
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PWY-2221
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis IV (engineered)
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PWY-7126
ethene biosynthesis V (engineered)
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PWY-7124
Ether lipid metabolism
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-
Fe(II) oxidation
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PWY-6692
ferrichrome A biosynthesis
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PWY-7571
fluoroacetate and fluorothreonine biosynthesis
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PWY-6644
Folate biosynthesis
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-
folate transformations I
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PWY-2201
folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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-
1CMET2-PWY
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
formaldehyde oxidation I
-
-
RUMP-PWY
formate to nitrite electron transfer
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-
PWY0-1585
Fructose and mannose metabolism
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-
Galactose metabolism
-
-
GDP-alpha-D-glucose biosynthesis
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PWY-5661
GDP-mannose biosynthesis
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PWY-5659
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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-
PWY-6142
gluconeogenesis III
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PWY66-399
glucose and glucose-1-phosphate degradation
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GLUCOSE1PMETAB-PWY
glutamate and glutamine metabolism
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-
Glutathione metabolism
-
-
glutathione metabolism
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-
glycerol degradation to butanol
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PWY-7003
glycerol-3-phosphate to fumarate electron transfer
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-
PWY0-1582
Glycerolipid metabolism
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-
Glycerophospholipid metabolism
-
-
Glycine, serine and threonine metabolism
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-
glycogen degradation I
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-
GLYCOCAT-PWY
glycogen degradation II
-
-
PWY-5941
glycolysis
-
-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
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-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
Glyoxylate and dicarboxylate metabolism
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-
glyoxylate cycle
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GLYOXYLATE-BYPASS
glyphosate degradation III
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PWY-7807
gossypol biosynthesis
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PWY-5773
guanine and guanosine salvage I
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-
PWY-6620
guanosine nucleotides degradation III
-
-
PWY-6608
heterolactic fermentation
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-
P122-PWY
hydrogen oxidation I (aerobic)
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-
P283-PWY
hydrogen production
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-
hydrogen to fumarate electron transfer
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PWY0-1576
icosapentaenoate metabolites biosynthesis
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PWY-8399
incomplete reductive TCA cycle
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-
P42-PWY
inosine 5'-phosphate degradation
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PWY-5695
iron reduction and absorption
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PWY-5934
isoprene biosynthesis II (engineered)
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PWY-7391
Isoquinoline alkaloid biosynthesis
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-
justicidin B biosynthesis
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PWY-6824
ketogenesis
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PWY66-367
L-alanine degradation II (to D-lactate)
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-
ALACAT2-PWY
L-alanine degradation IV
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PWY1-2
L-glutamate degradation I
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GLUTAMATE-DEG1-PWY
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-glutamate degradation XI (reductive Stickland reaction)
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PWY-8190
L-serine biosynthesis II
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PWY-8011
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales)
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PWY-8377
linoleate metabolites biosynthesis
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PWY-8395
Linoleic acid metabolism
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-
lipid metabolism
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Lipopolysaccharide biosynthesis
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-
lipoprotein posttranslational modification
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PWY-7884
luteolin triglucuronide degradation
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PWY-7445
malate/L-aspartate shuttle pathway
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-
MALATE-ASPARTATE-SHUTTLE-PWY
maresin biosynthesis
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PWY-8356
matairesinol biosynthesis
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PWY-5466
Metabolic pathways
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-
Methane metabolism
-
-
methanol oxidation to formaldehyde IV
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PWY-5506
methylaspartate cycle
mevalonate metabolism
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-
mevalonate pathway I (eukaryotes and bacteria)
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-
PWY-922
mevalonate pathway II (haloarchaea)
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PWY-6174
mevalonate pathway III (Thermoplasma)
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PWY-7524
mevalonate pathway IV (archaea)
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PWY-8125
Microbial metabolism in diverse environments
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-
mixed acid fermentation
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-
FERMENTATION-PWY
NAD biosynthesis from nicotinamide
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-
NAD-BIOSYNTHESIS-III
NADH to fumarate electron transfer
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-
PWY0-1336
NADPH to cytochrome c oxidase via plastocyanin
-
-
PWY-8271
Neomycin, kanamycin and gentamicin biosynthesis
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-
Nicotinate and nicotinamide metabolism
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-
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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PWY-381
nitrate reduction IV (dissimilatory)
-
-
PWY-5674
nitrate reduction VII (denitrification)
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PWY-6748
nitrate reduction X (dissimilatory, periplasmic)
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PWY0-1584
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
Nitrogen metabolism
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-
nitrogen remobilization from senescing leaves
-
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PWY-6549
Nitrotoluene degradation
-
-
nocardicin A biosynthesis
-
-
PWY-7797
non-pathway related
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-
nucleoside and nucleotide degradation (archaea)
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PWY-5532
o-diquinones biosynthesis
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PWY-6752
One carbon pool by folate
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-
Oxidative phosphorylation
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-
oxidative phosphorylation
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Pantothenate and CoA biosynthesis
-
-
pantothenate biosynthesis
-
-
partial TCA cycle (obligate autotrophs)
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-
PWY-5913
Penicillin and cephalosporin biosynthesis
-
-
Pentose phosphate pathway
-
-
peptido-conjugates in tissue regeneration biosynthesis
-
-
PWY-8355
Phenylalanine, tyrosine and tryptophan biosynthesis
-
-
Phenylpropanoid biosynthesis
-
-
phosphatidylcholine acyl editing
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-
PWY-6803
phospholipases
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LIPASYN-PWY
phospholipid remodeling (phosphatidate, yeast)
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PWY-7417
phospholipid remodeling (phosphatidylcholine, yeast)
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-
PWY-7416
phospholipid remodeling (phosphatidylethanolamine, yeast)
-
-
PWY-7409
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
Photosynthesis
-
-
photosynthesis light reactions
-
-
PWY-101
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7218
plasmalogen biosynthesis I (aerobic)
-
-
PWY-7782
plasmalogen degradation
-
-
PWY-7783
polyamine pathway
-
-
Propanoate metabolism
-
-
propionate fermentation
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-
protectin biosynthesis
-
-
PWY-8357
purine deoxyribonucleosides degradation I
-
-
PWY-7179
purine deoxyribonucleosides degradation II
-
-
PWY-7179-1
Purine metabolism
-
-
purine metabolism
-
-
purine ribonucleosides degradation
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-
PWY0-1296
putrescine biosynthesis III
-
-
PWY-46
pyrimidine deoxyribonucleosides salvage
-
-
PWY-7199
pyrimidine deoxyribonucleotides biosynthesis from CTP
-
-
PWY-7210
pyrimidine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis II
-
-
PWY-7187
pyrimidine deoxyribonucleotides de novo biosynthesis IV
-
-
PWY-7198
Pyrimidine metabolism
-
-
pyrimidine metabolism
-
-
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
resolvin D biosynthesis
-
-
PWY66-397
retinol biosynthesis
-
-
PWY-6857
Riboflavin metabolism
-
-
Rubisco shunt
-
-
PWY-5723
salinosporamide A biosynthesis
-
-
PWY-6627
serine metabolism
-
-
sesamin biosynthesis
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PWY-5469
Starch and sucrose metabolism
-
-
starch biosynthesis
-
-
PWY-622
Streptomycin biosynthesis
-
-
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
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-
PWY0-1353
succinate to cytochrome bo oxidase electron transfer
-
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PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
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-
PWY1YI0-3
succinate to plastoquinol oxidase
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-
PWY1YI0-8
sucrose biosynthesis I (from photosynthesis)
-
-
SUCSYN-PWY
sucrose biosynthesis II
-
-
PWY-7238
sucrose biosynthesis III
-
-
PWY-7347
sucrose degradation II (sucrose synthase)
-
-
PWY-3801
sucrose degradation III (sucrose invertase)
-
-
PWY-621
sucrose degradation IV (sucrose phosphorylase)
-
-
PWY-5384
sulfide oxidation I (to sulfur globules)
-
-
P222-PWY
sulfide oxidation III (to sulfite)
-
-
PWY-5285
sulfopterin metabolism
-
-
Sulfur metabolism
-
-
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
superpathway of ornithine degradation
-
-
ORNDEG-PWY
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
-
-
PWY0-166
Taurine and hypotaurine metabolism
-
-
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
-
-
REDCITCYC
TCA cycle VII (acetate-producers)
-
-
PWY-7254
TCA cycle VIII (Chlamydia)
-
-
TCA-1
Terpenoid backbone biosynthesis
-
-
tetrahydrofolate metabolism
-
-
Thiamine metabolism
-
-
trehalose degradation I (low osmolarity)
-
-
TREDEGLOW-PWY
trehalose degradation II (cytosolic)
-
-
PWY0-1182
trehalose degradation IV
-
-
PWY-2722
trehalose degradation V
-
-
PWY-2723
triacylglycerol degradation
-
-
LIPAS-PWY
Tryptophan metabolism
-
-
Tyrosine metabolism
-
-
UDP-N-acetyl-D-galactosamine biosynthesis II
-
-
PWY-5514
UDP-N-acetyl-D-galactosamine biosynthesis III
-
-
PWY-8013
UDP-N-acetyl-D-glucosamine biosynthesis I
-
-
UDPNAGSYN-PWY
UDP-N-acetyl-D-glucosamine biosynthesis II
-
-
UDPNACETYLGALSYN-PWY
Valine, leucine and isoleucine degradation
-
-
xanthine and xanthosine salvage
-
-
SALVPURINE2-PWY
xanthommatin biosynthesis
-
-
PWY-8249
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Shewanella putrefaciens)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA