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Information on Organism Rubrivivax gelatinosus

Synonyms:
ATCC 17011; CCUG 15841; CCUG 21977; CCUG 21990; CIP 107072; DSM 1709; IFO 16663; JCM 21318; LMG 4311; LMG:4311; NBRC 16663; NCIB 8290; NCIB:8290; NCIMB 8290; Rhodocyclus gelatinosus (Molisch 1907) Imhoff et al. 1984; Rhodocyclus gelatinosus; "Rhodocystis gelatinosa" Molisch 1907; Rhodocystis gelatinosa; Rhodopseudomonas gelatinosa (Molisch 1907) van Niel 1944 (Approved Lists 1980); Rhodopseudomonas gelatinosa; Rubrivivax gelatinosus (Molisch 1907) Willems et al. 1991; Rubrivivax gelatinosus;
Word Map for Organism Rubrivivax gelatinosus
TaxTree of Organism Rubrivivax gelatinosus
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Betaproteobacteria can be found in Brenda BRENDA pathways(class)
Burkholderiales can be found in Brenda BRENDA pathways(order)
Burkholderiales genera incertae sedis can be found in Brenda
Rubrivivax can be found in Brenda BRENDA pathways(genus)
Rubrivivax gelatinosus can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(aminomethyl)phosphonate degradation
-
-
PWY-7805
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
(S)-reticuline biosynthesis
-
-
(S)-reticuline biosynthesis I
-
-
PWY-3581
(S)-reticuline biosynthesis II
-
-
PWY-6133
1,3-propanediol biosynthesis (engineered)
-
-
PWY-7385
2,2'-bis-(4-hydroxy-3-methybut-2-enyl)-beta,beta-carotene monoglucoside biosynthesis
-
-
PWY-7945
2-nitrotoluene degradation
-
-
PWY-5641
3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)
-
-
CHLOROPHYLL-SYN
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
-
-
PWY-5531
3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)
-
-
PWY-7159
acetaldehyde biosynthesis II
-
-
PWY-6330
adenosine ribonucleotides de novo biosynthesis
-
-
PWY-7219
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
-
PWY-7279
aerobic respiration III (alternative oxidase pathway)
-
-
PWY-4302
aerobic toluene degradation
-
-
Alanine, aspartate and glutamate metabolism
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-
Amaryllidacea alkaloids biosynthesis
-
-
PWY-7826
Amino sugar and nucleotide sugar metabolism
-
-
anaerobic energy metabolism (invertebrates, mitochondrial)
-
-
PWY-7384
arsenite to oxygen electron transfer
-
-
PWY-4521
arsenite to oxygen electron transfer (via azurin)
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-
PWY-7429
assimilatory sulfate reduction II
-
-
SULFMETII-PWY
assimilatory sulfate reduction III
-
-
PWY-6683
assimilatory sulfate reduction IV
-
-
PWY1ZNC-1
ATP biosynthesis
-
-
PWY-7980
avenanthramide biosynthesis
-
-
PWY-8157
bacterioruberin biosynthesis
-
-
PWY-7944
Benzoate degradation
-
-
beta-carboline biosynthesis
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-
PWY-5877
Betalain biosynthesis
-
-
betaxanthin biosynthesis
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-
PWY-5426
betaxanthin biosynthesis (via dopamine)
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-
PWY-5403
Biosynthesis of secondary metabolites
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-
Butanoate metabolism
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-
butanol and isobutanol biosynthesis (engineered)
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-
PWY-7396
Calvin-Benson-Bassham cycle
-
-
CALVIN-PWY
capsaicin biosynthesis
-
-
PWY-5710
Carbon fixation in photosynthetic organisms
-
-
Carbon fixation pathways in prokaryotes
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-
carbon tetrachloride degradation II
-
-
PWY-5372
Carotenoid biosynthesis
-
-
carotenoid biosynthesis
-
-
catechol degradation to 2-hydroxypentadienoate I
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-
P183-PWY
catechol degradation to 2-hydroxypentadienoate II
-
-
PWY-5419
catecholamine biosynthesis
chitin deacetylation
-
-
PWY-7118
Chloroalkane and chloroalkene degradation
-
-
Chlorocyclohexane and chlorobenzene degradation
-
-
chlorogenic acid biosynthesis I
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-
PWY-6039
chlorophyll metabolism
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-
Citrate cycle (TCA cycle)
-
-
citrate degradation
-
-
PWY-6038
citrate lyase activation
-
-
P2-PWY
citric acid cycle
-
-
coumarins biosynthesis (engineered)
-
-
PWY-7398
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
-
-
PWY-7854
curcuminoid biosynthesis
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-
PWY-6432
cyanophycin metabolism
-
-
PWY-7052
cyclic electron flow
-
-
PWY-8270
Cysteine and methionine metabolism
-
-
cysteine metabolism
-
-
D-xylose degradation IV
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-
PWY-7294
denitrification
-
-
dissimilatory sulfate reduction I (to hydrogen sufide))
-
-
DISSULFRED-PWY
dZTP biosynthesis
-
-
PWY-8289
ethanol fermentation
-
-
ethene biosynthesis III (microbes)
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-
PWY-6854
Fe(II) oxidation
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-
PWY-6692
Flavonoid biosynthesis
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-
flexixanthin biosynthesis
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-
PWY-7947
formaldehyde assimilation II (assimilatory RuMP Cycle)
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-
PWY-1861
formate to nitrite electron transfer
-
-
PWY0-1585
Fructose and mannose metabolism
-
-
Galactose metabolism
-
-
germacrene biosynthesis
-
-
PWY-5733
glucosylglycerol biosynthesis
-
-
PWY-7902
glycerol-3-phosphate to fumarate electron transfer
-
-
PWY0-1582
Glycerolipid metabolism
-
-
glycine biosynthesis III
-
-
GLYSYN-ALA-PWY
glycine metabolism
-
-
Glycine, serine and threonine metabolism
-
-
glycogen biosynthesis I (from ADP-D-Glucose)
-
-
GLYCOGENSYNTH-PWY
glycogen metabolism
-
-
glycolate and glyoxylate degradation II
-
-
GLYOXDEG-PWY
glycolysis
-
-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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-
PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
Glycosaminoglycan degradation
-
-
Glycosphingolipid biosynthesis - ganglio series
-
-
Glyoxylate and dicarboxylate metabolism
-
-
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
glyphosate degradation III
-
-
PWY-7807
heme b biosynthesis I (aerobic)
-
-
HEME-BIOSYNTHESIS-II
heme b biosynthesis II (oxygen-independent)
-
-
HEMESYN2-PWY
heme b biosynthesis V (aerobic)
-
-
HEME-BIOSYNTHESIS-II-1
heme metabolism
-
-
homocysteine and cysteine interconversion
-
-
PWY-801
hydrogen oxidation I (aerobic)
-
-
P283-PWY
hydrogen production
-
-
hydrogen production III
-
-
PWY-6759
hydrogen production VI
-
-
PWY-6780
hydrogen production VIII
-
-
PWY-6785
hydrogen sulfide biosynthesis II (mammalian)
-
-
PWY66-426
hydrogen to fumarate electron transfer
-
-
PWY0-1576
hydroxycinnamic acid serotonin amides biosynthesis
-
-
PWY-5473
hydroxycinnamic acid tyramine amides biosynthesis
-
-
PWY-5474
incomplete reductive TCA cycle
-
-
P42-PWY
indole-3-acetate biosynthesis II
-
-
PWY-581
Isoquinoline alkaloid biosynthesis
-
-
L-arabinose degradation IV
-
-
PWY-7295
L-cysteine biosynthesis III (from L-homocysteine)
-
-
HOMOCYSDEGR-PWY
L-dopa degradation II (bacterial)
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-
PWY-8110
L-glutamate degradation VII (to butanoate)
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-
GLUDEG-II-PWY
L-methionine degradation III
-
-
PWY-5082
L-phenylalanine degradation IV (mammalian, via side chain)
-
-
PWY-6318
L-tryptophan degradation VI (via tryptamine)
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-
PWY-3181
L-tryptophan degradation X (mammalian, via tryptamine)
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PWY-6307
lauryl-hydroxychlorobactene glucoside biosynthesis
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PWY-7940
lipid A biosynthesis
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-
lipid IVA biosynthesis (2,3-diamino-2,3-dideoxy-D-glucopyranose-containing)
-
-
PWY2B4Q-4
lipid IVA biosynthesis (E. coli)
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-
NAGLIPASYN-PWY
lipid IVA biosynthesis (generic)
-
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PWY-8283
lipid IVA biosynthesis (H. pylori)
-
-
PWYI-14
lipid IVA biosynthesis (P. gingivalis)
-
-
PWY-8245
lipid IVA biosynthesis (P. putida)
-
-
PWY-8073
lipid IVA biosynthesis (Vibrio cholerae serogroup O1 El Tor)
-
-
PWY2G6Z-2
lipid metabolism
-
-
Lipopolysaccharide biosynthesis
-
-
long chain fatty acid ester synthesis (engineered)
-
-
PWY-6873
Metabolic pathways
-
-
metabolism of disaccharids
-
-
Methane metabolism
-
-
methanofuran biosynthesis
-
-
PWY-5254
methanogenesis from acetate
-
-
METH-ACETATE-PWY
methionine metabolism
-
-
methylaspartate cycle
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
-
-
FERMENTATION-PWY
Monobactam biosynthesis
-
-
myxol-2' fucoside biosynthesis
-
-
PWY-6279
NAD(P)/NADPH interconversion
-
-
PWY-5083
NADH to cytochrome bd oxidase electron transfer I
-
-
PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
-
-
PWY0-1335
NADH to fumarate electron transfer
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-
PWY0-1336
NADPH to cytochrome c oxidase via plastocyanin
-
-
PWY-8271
Nicotinate and nicotinamide metabolism
-
-
nitrate assimilation
-
-
nitrate reduction I (denitrification)
-
-
DENITRIFICATION-PWY
nitrate reduction VII (denitrification)
-
-
PWY-6748
nitrate reduction X (dissimilatory, periplasmic)
-
-
PWY0-1584
nitrifier denitrification
-
-
PWY-7084
nitrogen fixation I (ferredoxin)
-
-
N2FIX-PWY
Nitrogen metabolism
-
-
nitrogen remobilization from senescing leaves
-
-
PWY-6549
Nitrotoluene degradation
-
-
non-pathway related
-
-
nucleoside and nucleotide degradation (archaea)
-
-
PWY-5532
octopamine biosynthesis
-
-
PWY-7297
okenone biosynthesis
-
-
PWY-7591
Other glycan degradation
-
-
Oxidative phosphorylation
-
-
oxidative phosphorylation
-
-
Pantothenate and CoA biosynthesis
-
-
partial TCA cycle (obligate autotrophs)
-
-
PWY-5913
Pentose phosphate pathway
-
-
pentose phosphate pathway (non-oxidative branch) II
-
-
PWY-8178
phenol degradation
-
-
Phenylalanine metabolism
-
-
phenylethanol biosynthesis
-
-
PWY-5751
phenylpropanoid biosynthesis
-
-
PWY-361
Phenylpropanoid biosynthesis
-
-
phenylpropanoid biosynthesis
-
-
phenylpropanoids methylation (ice plant)
-
-
PWY-7498
Photosynthesis
-
-
photosynthesis
-
-
photosynthesis light reactions
-
-
PWY-101
Porphyrin and chlorophyll metabolism
-
-
propionate fermentation
-
-
psilocybin biosynthesis
-
-
PWY-7936
Purine metabolism
-
-
purine metabolism
-
-
pyrimidine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis II
-
-
PWY-7187
pyrimidine deoxyribonucleotides de novo biosynthesis III
-
-
PWY-6545
pyrimidine deoxyribonucleotides dephosphorylation
-
-
PWY-7206
Pyrimidine metabolism
-
-
pyruvate fermentation to acetate VIII
-
-
PWY-5768
pyruvate fermentation to acetoin III
-
-
PWY3O-440
pyruvate fermentation to ethanol II
-
-
PWY-5486
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive acetyl coenzyme A pathway
-
-
reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
-
-
CODH-PWY
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
retinol biosynthesis
-
-
PWY-6857
Riboflavin metabolism
-
-
Rubisco shunt
-
-
PWY-5723
salidroside biosynthesis
-
-
PWY-6802
scopoletin biosynthesis
-
-
PWY-6792
secologanin and strictosidine biosynthesis
-
-
PWY-5290
selenate reduction
-
-
PWY-6932
Selenocompound metabolism
-
-
serotonin and melatonin biosynthesis
-
-
PWY-6030
serotonin metabolism
-
-
Sesquiterpenoid and triterpenoid biosynthesis
-
-
spheroidene and spheroidenone biosynthesis
-
-
PWY-6286
Sphingolipid metabolism
-
-
spirilloxanthin and 2,2'-diketo-spirilloxanthin biosynthesis
-
-
PWY-6581
Starch and sucrose metabolism
-
-
starch biosynthesis
-
-
PWY-622
Stilbenoid, diarylheptanoid and gingerol biosynthesis
-
-
Styrene degradation
-
-
suberin monomers biosynthesis
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
-
-
PWY0-1353
succinate to cytochrome bo oxidase electron transfer
-
-
PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
succinate to plastoquinol oxidase
-
-
PWY1YI0-8
sulfate activation for sulfonation
-
-
PWY-5340
sulfate reduction
-
-
sulfite oxidation III
-
-
PWY-5278
Sulfur metabolism
-
-
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
-
-
PWY4LZ-257
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
-
-
PWY0-166
taurine biosynthesis III
-
-
PWY-8359
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
-
-
REDCITCYC
TCA cycle VII (acetate-producers)
-
-
PWY-7254
TCA cycle VIII (Chlamydia)
-
-
TCA-1
Thiamine metabolism
-
-
toluene degradation II (aerobic) (via 4-methylcatechol)
-
-
TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
-
-
TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
-
-
TOLUENE-DEG-2-OH-PWY
triacylglycerol degradation
-
-
LIPAS-PWY
Tryptophan metabolism
-
-
tryptophan metabolism
-
-
tunicamycin biosynthesis
-
-
PWY-7821
Tyrosine metabolism
-
-
valine metabolism
-
-
Xylene degradation
-
-
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
top print hide
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
additional information
in photosynthetic tissue, undetectable in non-photosynthetic tissues
Manually annotated by BRENDA team
top print hide
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Rubrivivax gelatinosus)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA