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Organism related
Word Map for Organism Pseudomonas syringae pv. tomato str. DC3000
- Pseudomonas syringae pv. tomato str. DC3000
- coronatine
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speck
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pathogen-associated
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avrrpt2
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hemibiotrophic
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pstdc3000
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pattern-triggered
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sa-mediated
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pamp-triggered
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avrptob
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hyaloperonospora
TaxTree of Organism Pseudomonas syringae pv. tomato str. DC3000
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PATHWAY 
BRENDA Link
KEGG Link
MetaCyc Link
(5R)-carbapenem carboxylate biosynthesis
1,3-propanediol biosynthesis (engineered)
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PWY-7385
1,5-anhydrofructose degradation
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PWY-6992
2,3-dihydroxybenzoate biosynthesis
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PWY-5901
2-carboxy-1,4-naphthoquinol biosynthesis
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PWY-5837
2-chloroacrylate degradation I
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PWY-7425
3-hydroxypropanoate cycle
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PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
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PWY-5789
4-hydroxy-2-nonenal detoxification
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PWY-7112
7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
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PWY-7286
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acrylonitrile degradation I
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PWY-7308
acyl carrier protein activation
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PWY-6012-1
acyl carrier protein metabolism
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PWY-6012
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
alpha-linolenate metabolites biosynthesis
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PWY-8398
Amaryllidacea alkaloids biosynthesis
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PWY-7826
arginine dependent acid resistance
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PWY0-1299
ascorbate recycling (cytosolic)
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PWY-6370
avenanthramide biosynthesis
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PWY-8157
bacterial bioluminescence
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PWY-7723
baicalein degradation (hydrogen peroxide detoxification)
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PWY-7214
betanidin degradation
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PWY-5461
Bifidobacterium shunt
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P124-PWY
bryostatin biosynthesis
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PWY-8047
bupropion degradation
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PWY66-241
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
Calvin-Benson-Bassham cycle
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CALVIN-PWY
camalexin biosynthesis
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CAMALEXIN-SYN
capsaicin biosynthesis
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PWY-5710
cellulose degradation II (fungi)
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PWY-6788
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
chlorogenic acid biosynthesis I
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PWY-6039
chlorosalicylate degradation
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PWY-6107
choline biosynthesis III
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PWY-3561
CO2 fixation into oxaloacetate (anaplerotic)
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PWYQT-4429
coumarins biosynthesis (engineered)
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PWY-7398
curcuminoid biosynthesis
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PWY-6432
cyanate degradation
degradation of aromatic, nitrogen containing compounds
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divinyl ether biosynthesis II
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PWY-5409
enterobactin biosynthesis
Entner-Doudoroff pathway I
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PWY-8004
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
farnesene biosynthesis
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PWY-5725
fatty acid biosynthesis initiation (mitochondria)
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PWY66-429
fatty acid biosynthesis initiation (plant mitochondria)
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PWY-6799
fatty acid biosynthesis initiation (type II)
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PWY-4381
folate transformations I
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PWY-2201
folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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1CMET2-PWY
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
formaldehyde oxidation II (glutathione-dependent)
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PWY-1801
fructan biosynthesis
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PWY-822
GDP-alpha-D-glucose biosynthesis
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PWY-5661
gliotoxin biosynthesis
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PWY-7533
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glucose and glucose-1-phosphate degradation
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GLUCOSE1PMETAB-PWY
glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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PWY-6842
glycerol degradation to butanol
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PWY-7003
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
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PWY-7900
glycogen degradation I
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GLYCOCAT-PWY
glycogen degradation II
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PWY-5941
glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glyoxylate assimilation
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PWY-5744
heterolactic fermentation
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P122-PWY
homocysteine and cysteine interconversion
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PWY-801
hydrogen sulfide biosynthesis II (mammalian)
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PWY66-426
indole glucosinolate activation (herbivore attack)
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PWYQT-4476
indole glucosinolate activation (intact plant cell)
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PWYQT-4477
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis III (bacteria)
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PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
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PWY-5025
indole-3-acetate biosynthesis V (bacteria and fungi)
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PWY-5026
inulin degradation
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PWY-8314
jasmonic acid biosynthesis
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PWY-735
justicidin B biosynthesis
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PWY-6824
L-arginine degradation III (arginine decarboxylase/agmatinase pathway)
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PWY0-823
L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)
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ARGDEG-III-PWY
L-arginine degradation X (arginine monooxygenase pathway)
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ARGDEG-V-PWY
L-citrulline biosynthesis
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CITRULBIO-PWY
L-cysteine biosynthesis I
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CYSTSYN-PWY
L-cysteine biosynthesis III (from L-homocysteine)
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HOMOCYSDEGR-PWY
L-methionine biosynthesis I
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HOMOSER-METSYN-PWY
L-methionine biosynthesis III
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HSERMETANA-PWY
L-methionine degradation I (to L-homocysteine)
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METHIONINE-DEG1-PWY
L-methionine salvage from L-homocysteine
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ADENOSYLHOMOCYSCAT-PWY
L-Ndelta-acetylornithine biosynthesis
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PWY-6922
L-phenylalanine degradation IV (mammalian, via side chain)
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PWY-6318
L-proline degradation I
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PROUT-PWY
L-threonine degradation III (to methylglyoxal)
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THRDLCTCAT-PWY
linoleate metabolites biosynthesis
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PWY-8395
lipid A-core biosynthesis (E. coli K-12)
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LIPA-CORESYN-PWY
lipid IVA biosynthesis (2,3-diamino-2,3-dideoxy-D-glucopyranose-containing)
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PWY2B4Q-4
lipid IVA biosynthesis (E. coli)
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NAGLIPASYN-PWY
lipid IVA biosynthesis (generic)
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PWY-8283
lipid IVA biosynthesis (H. pylori)
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PWYI-14
lipid IVA biosynthesis (P. gingivalis)
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PWY-8245
lipid IVA biosynthesis (P. putida)
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PWY-8073
lipid IVA biosynthesis (Vibrio cholerae serogroup O1 El Tor)
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PWY2G6Z-2
luteolin triglucuronide degradation
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PWY-7445
matairesinol biosynthesis
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PWY-5466
melatonin degradation I
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PWY-6398
melibiose degradation
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PWY0-1301
methanol oxidation to formaldehyde IV
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PWY-5506
methyl indole-3-acetate interconversion
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PWY-6303
methylsalicylate degradation
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PWY-6184, PWY18C3-24
methylwyosine biosynthesis
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PWY-7285
mupirocin biosynthesis
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PWY-8012
mycobactin biosynthesis
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PWY185E-1
mycolate biosynthesis
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PWYG-321
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nucleoside and nucleotide degradation (archaea)
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PWY-5532
o-diquinones biosynthesis
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PWY-6752
oleandomycin activation/inactivation
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PWY-6972
pederin biosynthesis
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PWY-8049
pentachlorophenol degradation
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PCPDEG-PWY
petrobactin biosynthesis
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PWY-6289
phenylethanol biosynthesis
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PWY-5751
phenylethylamine degradation I
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2PHENDEG-PWY
phenylpropanoid biosynthesis
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PWY-361
phenylpropanoids methylation (ice plant)
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PWY-7498
phosphatidate metabolism, as a signaling molecule
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PWY-7039
phospholipases
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LIPASYN-PWY
phospholipid remodeling (phosphatidylethanolamine, yeast)
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PWY-7409
phosphopantothenate biosynthesis I
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PANTO-PWY
photosynthesis light reactions
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PWY-101
phytate degradation I
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PWY-4702
proline to cytochrome bo oxidase electron transfer
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PWY0-1544
protective electron sinks in the thylakoid membrane (PSII to PTOX)
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PWY1YI0-7
protein S-nitrosylation and denitrosylation
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PWY-7798
protein ubiquitination
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PWY-7511
putrescine biosynthesis I
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PWY-40
putrescine biosynthesis II
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PWY-43
reactive oxygen species degradation
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DETOX1-PWY-1
resveratrol biosynthesis
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PWY-84
retinol biosynthesis
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PWY-6857
Rubisco shunt
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PWY-5723
S-adenosyl-L-methionine salvage II
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PWY-5041
salicylate biosynthesis I
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PWY-6406
salicylate biosynthesis II
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PWY-8321
salicylate degradation I
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PWY-6183
scopoletin biosynthesis
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PWY-6792
seleno-amino acid biosynthesis (plants)
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PWY-6936
sesamin biosynthesis
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PWY-5469
spermidine biosynthesis III
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PWY-6834
stachyose degradation
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PWY-6527
suberin monomers biosynthesis
sucrose biosynthesis I (from photosynthesis)
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SUCSYN-PWY
sucrose biosynthesis II
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PWY-7238
sucrose degradation III (sucrose invertase)
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PWY-621
sucrose degradation V (sucrose alpha-glucosidase)
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PWY66-373
superoxide radicals degradation
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DETOX1-PWY
superpathway of glucose and xylose degradation
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PWY-6901
superpathway of methylsalicylate metabolism
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PWY18C3-25
taurine biosynthesis I
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PWY-5331
taurine biosynthesis II
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PWY-7850
taurine biosynthesis III
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PWY-8359
tetrapyrrole biosynthesis I (from glutamate)
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PWY-5188
tetrapyrrole biosynthesis II (from glycine)
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PWY-5189
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
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PWY-5410
trehalose biosynthesis I
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TRESYN-PWY
trehalose biosynthesis II
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PWY-881
trehalose biosynthesis III
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TREHALOSESYN-PWY
trehalose degradation I (low osmolarity)
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TREDEGLOW-PWY
trehalose degradation II (cytosolic)
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PWY0-1182
trehalose degradation IV
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PWY-2722
trehalose degradation V
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PWY-2723
trehalose degradation VI (periplasmic)
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PWY0-1466
tRNA methylation (yeast)
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PWY-6829
tRNA processing
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PWY0-1479
UDP-N-acetyl-D-galactosamine biosynthesis II
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PWY-5514
UDP-N-acetyl-D-glucosamine biosynthesis II
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UDPNACETYLGALSYN-PWY
vanillin biosynthesis I
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PWY-5665
volatile benzenoid biosynthesis I (ester formation)
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PWY-4203
xanthommatin biosynthesis
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PWY-8249
(5R)-carbapenem carboxylate biosynthesis
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PWY-5737
cyanate degradation
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CYANCAT-PWY
enterobactin biosynthesis
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ENTBACSYN-PWY
suberin monomers biosynthesis
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PWY-1121
LINKS TO OTHER DATABASES (specific for Pseudomonas syringae pv. tomato str. DC3000)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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