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Organism related
Word Map for Organism Populus trichocarpa
- Populus trichocarpa
- deltoides
- patens
- monolignols
- tremula
- aspen
- maximowiczii
- truncatula
- mirnas
- tremuloides
- salicaceae
- moellendorffii
-
hemispher
- musiva
- melampsora
-
pedigree
- selaginella
- distachyon
-
bartr
-
cis-elements
- larici-populina
-
wood-forming
-
microsynteny
TaxTree of Organism Populus trichocarpa
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EC NUMBER 
COMMENTARY 
-
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(-)-maackiain biosynthesis
-
-
PWY-2464
(-)-medicarpin biosynthesis
-
-
PWY-2463
(3E)-4,8-dimethylnona-1,3,7-triene biosynthesis I
-
-
PWY-5434
(3R)-linalool biosynthesis
-
-
PWY-7709
(3S)-linalool biosynthesis
-
-
PWY-7141
(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)
-
-
PWY-7726
(5Z)-dodecenoate biosynthesis I
-
-
PWY0-862
(5Z)-dodecenoate biosynthesis II
-
-
PWY-7858
(8E,10E)-dodeca-8,10-dienol biosynthesis
-
-
PWY-7654
(aminomethyl)phosphonate degradation
-
-
PWY-7805
(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7216
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
(S)-propane-1,2-diol degradation
-
-
PWY-7013
1,3-beta-D-glucan biosynthesis
-
-
PWY-6773
1,5-anhydrofructose degradation
-
-
PWY-6992
1-methylpyrrolinium biosynthesis
-
-
PWY-5315
10-cis-heptadecenoyl-CoA degradation (yeast)
-
-
PWY-7337
10-trans-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
-
-
PWY-7339
10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
-
-
PWY-7338
2'-deoxymugineic acid phytosiderophore biosynthesis
-
-
PWY-5912
2,3-cis-flavanols biosynthesis
-
-
PWY-6035
2,3-trans-flavanols biosynthesis
-
-
PWY-6029
2-arachidonoylglycerol biosynthesis
-
-
PWY-8052
2-deoxy-D-ribose degradation II
-
-
PWY-8058
2-methyl-branched fatty acid beta-oxidation
-
-
PWY-8181
2-methylpropene degradation
-
-
PWY-7778
3-dehydroquinate biosynthesis I
-
-
PWY-6164
3-hydroxypropanoate cycle
-
-
PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
-
-
PWY-5789
3-methylbutanol biosynthesis (engineered)
-
-
PWY-6871
3-phenylpropanoate degradation
-
-
P281-PWY
4-coumarate degradation (aerobic)
-
-
PWY-8002
4-coumarate degradation (anaerobic)
-
-
PWY-7046
4-ethylphenol degradation (anaerobic)
-
-
PWY-6080
4-hydroxy-2-nonenal detoxification
-
-
PWY-7112
4-hydroxybenzoate biosynthesis III (plants)
-
-
PWY-6435
4-oxopentanoate degradation
-
-
PWY-7948
5-deoxystrigol biosynthesis
-
-
PWY-7101
6-gingerol analog biosynthesis (engineered)
-
-
PWY-6920
8-amino-7-oxononanoate biosynthesis I
-
-
PWY-6519
9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
-
-
PWY-7340
abietic acid biosynthesis
-
-
PWY-5411
abscisic acid biosynthesis
-
-
PWY-695
acetaldehyde biosynthesis I
-
-
PWY-6333
acetate and ATP formation from acetyl-CoA III
-
-
PWY-8328
acetate conversion to acetyl-CoA
-
-
PWY0-1313
acetoacetate degradation (to acetyl CoA)
-
-
ACETOACETATE-DEG-PWY
acetone degradation I (to methylglyoxal)
-
-
PWY-5451
acetone degradation III (to propane-1,2-diol)
-
-
PWY-7466
acetyl-CoA fermentation to butanoate
-
-
PWY-5676
acetylene degradation (anaerobic)
-
-
P161-PWY
acrylonitrile degradation I
-
-
PWY-7308
adenosine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7227
adenosine deoxyribonucleotides de novo biosynthesis II
-
-
PWY-7220
adlupulone and adhumulone biosynthesis
-
-
PWY-7857
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
-
PWY-7279
aerobic respiration III (alternative oxidase pathway)
-
-
PWY-4302
aldoxime degradation
-
-
P345-PWY
all-trans-farnesol biosynthesis
-
-
PWY-6859
Amaryllidacea alkaloids biosynthesis
-
-
PWY-7826
ammonia assimilation cycle I
-
-
PWY-6963
ammonia assimilation cycle II
-
-
PWY-6964
ammonia assimilation cycle III
-
-
AMMASSIM-PWY
anaerobic energy metabolism (invertebrates, cytosol)
-
-
PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
-
-
PWY-7384
androstenedione degradation I (aerobic)
-
-
PWY-6944
androstenedione degradation II (anaerobic)
-
-
PWY-8152
apratoxin A biosynthesis
-
-
PWY-8361
Arg/N-end rule pathway (eukaryotic)
-
-
PWY-7799
aromatic polyketides biosynthesis
-
-
PWY-6316
arsenate detoxification I
-
-
PWY-8264
ascorbate glutathione cycle
-
-
PWY-2261
ascorbate recycling (cytosolic)
-
-
PWY-6370
assimilatory sulfate reduction I
-
-
SO4ASSIM-PWY
assimilatory sulfate reduction III
-
-
PWY-6683
avenanthramide biosynthesis
-
-
PWY-8157
bacilysin biosynthesis
-
-
PWY-7626
baicalein degradation (hydrogen peroxide detoxification)
-
-
PWY-7214
benzoate biosynthesis I (CoA-dependent, beta-oxidative)
-
-
PWY-6443
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
-
-
PWY-6444
benzoyl-CoA biosynthesis
-
-
PWY-6458
beta-D-glucuronide and D-glucuronate degradation
-
-
PWY-7247
betanidin degradation
-
-
PWY-5461
Bifidobacterium shunt
-
-
P124-PWY
bile acid biosynthesis, neutral pathway
bisabolene biosynthesis (engineered)
-
-
PWY-7102
bupropion degradation
-
-
PWY66-241
butanol and isobutanol biosynthesis (engineered)
-
-
PWY-7396
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
-
-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
caffeine biosynthesis I
-
-
PWY-5037
caffeine biosynthesis II (via paraxanthine)
-
-
PWY-5038
caffeoylglucarate biosynthesis
-
-
PWY-6673
Calvin-Benson-Bassham cycle
-
-
CALVIN-PWY
camalexin biosynthesis
-
-
CAMALEXIN-SYN
capsaicin biosynthesis
-
-
PWY-5710
capsiconiate biosynthesis
-
-
PWY-6027
carnosate bioynthesis
-
-
PWY-7680
cellulose biosynthesis
-
-
PWY-1001
chitin deacetylation
-
-
PWY-7118
chitin degradation I (archaea)
-
-
PWY-6855
chitin degradation II (Vibrio)
-
-
PWY-6902
chitin degradation III (Serratia)
-
-
PWY-7822
chlorogenic acid biosynthesis I
-
-
PWY-6039
chlorogenic acid biosynthesis II
-
-
PWY-6040
chlorogenic acid degradation
-
-
PWY-6781
chlorophyll a degradation I
-
-
PWY-5098
chlorophyll a degradation II
-
-
PWY-6927
chlorophyll a degradation III
-
-
PWY-7164
cholesterol degradation to androstenedione I (cholesterol oxidase)
-
-
PWY-6945
cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
-
-
PWY-6946
chorismate biosynthesis from 3-dehydroquinate
-
-
PWY-6163
cinnamoyl-CoA biosynthesis
-
-
PWY-6457
cis-geranyl-CoA degradation
-
-
PWY-6672
CMP phosphorylation
-
-
PWY-7205
CO2 fixation into oxaloacetate (anaplerotic)
-
-
PWYQT-4429
colupulone and cohumulone biosynthesis
-
-
PWY-5133
coumarins biosynthesis (engineered)
-
-
PWY-7398
crotonate fermentation (to acetate and cyclohexane carboxylate)
-
-
PWY-7401
curacin A biosynthesis
-
-
PWY-8358
curcuminoid biosynthesis
-
-
PWY-6432
cutin biosynthesis
-
-
PWY-321
cyanate degradation
cyanide detoxification I
-
-
ASPSYNII-PWY
cytosolic NADPH production (yeast)
-
-
PWY-7268
D-xylose degradation to ethylene glycol (engineered)
-
-
PWY-7178
degradation of aromatic, nitrogen containing compounds
-
-
dehydroabietic acid biosynthesis
-
-
PWY-5421
detoxification of reactive carbonyls in chloroplasts
-
-
PWY-6786
DIBOA-glucoside biosynthesis
-
-
PWY-6949
diethylphosphate degradation
-
-
PWY-5491
diterpene phytoalexins precursors biosynthesis
docosahexaenoate biosynthesis III (6-desaturase, mammals)
-
-
PWY-7606
dolabralexins biosynthesis
-
-
PWY-7994
dZTP biosynthesis
-
-
PWY-8289
ent-kaurene biosynthesis I
-
-
PWY-5032
Entner-Doudoroff pathway I
-
-
PWY-8004
ephedrine biosynthesis
-
-
PWY-5883
ergothioneine biosynthesis I (bacteria)
-
-
PWY-7255
erythritol biosynthesis I
-
-
PWY-8372
erythritol biosynthesis II
-
-
PWY-8373
ethanol degradation I
-
-
ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
-
-
PWY66-21
ethanol degradation III
-
-
PWY66-161
ethanol degradation IV
-
-
PWY66-162
ethanolamine utilization
-
-
PWY0-1477
ethene biosynthesis I (plants)
-
-
ETHYL-PWY
ethene biosynthesis III (microbes)
-
-
PWY-6854
ethylbenzene degradation (anaerobic)
-
-
PWY-481
ethylmalonyl-CoA pathway
-
-
PWY-5741
farnesene biosynthesis
-
-
PWY-5725
fatty acid beta-oxidation I (generic)
-
-
FAO-PWY
fatty acid beta-oxidation II (plant peroxisome)
-
-
PWY-5136
fatty acid beta-oxidation VI (mammalian peroxisome)
-
-
PWY66-391
fatty acid beta-oxidation VII (yeast peroxisome)
-
-
PWY-7288
fatty acid biosynthesis initiation (mitochondria)
-
-
PWY66-429
fatty acid elongation -- saturated
-
-
FASYN-ELONG-PWY
fatty acid salvage
-
-
PWY-7094
ferrichrome A biosynthesis
-
-
PWY-7571
ferulate and sinapate biosynthesis
-
-
PWY-5168
flavonoid biosynthesis
-
-
PWY1F-FLAVSYN
flavonoid biosynthesis (in equisetum)
-
-
PWY-6787
flavonoid di-C-glucosylation
-
-
PWY-7897
folate transformations I
-
-
PWY-2201
formaldehyde oxidation I
-
-
RUMP-PWY
formaldehyde oxidation II (glutathione-dependent)
-
-
PWY-1801
free phenylpropanoid acid biosynthesis
-
-
PWY-2181
fructan degradation
-
-
PWY-862
gallate biosynthesis
-
-
PWY-6707
geranyl diphosphate biosynthesis
-
-
PWY-5122
gibberellin biosynthesis III (early C-13 hydroxylation)
-
-
PWY-5035
gibberellin inactivation I (2beta-hydroxylation)
-
-
PWY-102
gliotoxin biosynthesis
-
-
PWY-7533
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
-
PWY-6142
glutaryl-CoA degradation
-
-
PWY-5177
glutathione biosynthesis
-
-
GLUTATHIONESYN-PWY
glutathione-mediated detoxification I
-
-
PWY-4061
glutathione-mediated detoxification II
-
-
PWY-6842
glutathione-peroxide redox reactions
-
-
PWY-4081
glycerol-3-phosphate to fumarate electron transfer
-
-
PWY0-1582
glycogen biosynthesis I (from ADP-D-Glucose)
-
-
GLYCOGENSYNTH-PWY
glycogen biosynthesis II (from UDP-D-Glucose)
-
-
PWY-5067
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
-
-
PWY-7900
glyoxylate assimilation
-
-
PWY-5744
glyphosate degradation III
-
-
PWY-7807
gondoate biosynthesis (anaerobic)
-
-
PWY-7663
gossypol biosynthesis
-
-
PWY-5773
guanosine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7226
guanosine deoxyribonucleotides de novo biosynthesis II
-
-
PWY-7222
guanosine ribonucleotides de novo biosynthesis
-
-
PWY-7221
heterolactic fermentation
-
-
P122-PWY
homoglutathione biosynthesis
-
-
PWY-6840
hydrogen to fumarate electron transfer
-
-
PWY0-1576
incomplete reductive TCA cycle
-
-
P42-PWY
indole glucosinolate activation (herbivore attack)
-
-
PWYQT-4476
indole glucosinolate activation (intact plant cell)
-
-
PWYQT-4477
indole-3-acetate biosynthesis II
-
-
PWY-581
indole-3-acetate biosynthesis III (bacteria)
-
-
PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
-
-
PWY-5025
indole-3-acetate biosynthesis V (bacteria and fungi)
-
-
PWY-5026
inulin degradation
-
-
PWY-8314
ipsdienol biosynthesis
-
-
PWY-7410
isopimaric acid biosynthesis
-
-
PWY-5422
isoprene biosynthesis I
-
-
PWY-6270
isoprene biosynthesis II (engineered)
-
-
PWY-7391
isopropanol biosynthesis (engineered)
-
-
PWY-6876
jasmonic acid biosynthesis
-
-
PWY-735
justicidin B biosynthesis
-
-
PWY-6824
kauralexin biosynthesis
-
-
PWY-6887
ketogenesis
-
-
PWY66-367
ketolysis
-
-
PWY66-368
L-alanine biosynthesis II
-
-
ALANINE-SYN2-PWY
L-alanine degradation II (to D-lactate)
-
-
ALACAT2-PWY
L-alanine degradation III
-
-
ALANINE-DEG3-PWY
L-alanine degradation V (oxidative Stickland reaction)
-
-
PWY-8189
L-alanine degradation VI (reductive Stickland reaction)
-
-
PWY-8188
L-arginine degradation X (arginine monooxygenase pathway)
-
-
ARGDEG-V-PWY
L-ascorbate degradation II (bacterial, aerobic)
-
-
PWY-6961
L-ascorbate degradation III
-
-
PWY-6960
L-aspartate degradation II (aerobic)
-
-
PWY-8291
L-aspartate degradation III (anaerobic)
-
-
PWY-8294
L-carnitine degradation II
-
-
PWY-3641
L-glutamate degradation V (via hydroxyglutarate)
-
-
P162-PWY
L-glutamine biosynthesis I
-
-
GLNSYN-PWY
L-histidine degradation V
-
-
PWY-5031
L-isoleucine biosynthesis V
-
-
PWY-5108
L-isoleucine degradation I
-
-
ILEUDEG-PWY
L-isoleucine degradation II
-
-
PWY-5078
L-leucine degradation III
-
-
PWY-5076
L-lysine fermentation to acetate and butanoate
-
-
P163-PWY
L-malate degradation II
-
-
PWY-7686
L-methionine degradation I (to L-homocysteine)
-
-
METHIONINE-DEG1-PWY
L-methionine degradation III
-
-
PWY-5082
L-phenylalanine biosynthesis I
-
-
PHESYN
L-phenylalanine biosynthesis II
-
-
PWY-3462
L-phenylalanine degradation III
-
-
PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
-
-
PWY-6318
L-tryptophan biosynthesis
-
-
TRPSYN-PWY
L-tryptophan degradation V (side chain pathway)
-
-
PWY-3162
L-tryptophan degradation X (mammalian, via tryptamine)
-
-
PWY-6307
L-tyrosine biosynthesis I
-
-
TYRSYN
L-tyrosine biosynthesis II
-
-
PWY-3461
L-tyrosine biosynthesis III
-
-
PWY-6120
L-tyrosine degradation III
-
-
PWY3O-4108
L-valine degradation II
-
-
PWY-5057
lacinilene C biosynthesis
-
-
PWY-5828
lanosterol biosynthesis
-
-
PWY-6132
leucodelphinidin biosynthesis
-
-
PWY-5152
leucopelargonidin and leucocyanidin biosynthesis
-
-
PWY1F-823
levopimaric acid biosynthesis
-
-
PWY-5412
linalool biosynthesis I
-
-
PWY-7182
lipid A-core biosynthesis (E. coli K-12)
-
-
LIPA-CORESYN-PWY
lupulone and humulone biosynthesis
-
-
PWY-5132
luteolin triglucuronide degradation
-
-
PWY-7445
lychnose and isolychnose biosynthesis
-
-
PWY-6524
matairesinol biosynthesis
-
-
PWY-5466
melatonin degradation I
-
-
PWY-6398
methanol oxidation to formaldehyde IV
-
-
PWY-5506
methyl indole-3-acetate interconversion
-
-
PWY-6303
methyl phomopsenoate biosynthesis
-
-
PWY-7721
methyl tert-butyl ether degradation
-
-
PWY-7779
methylaspartate cycle
methylerythritol phosphate pathway I
-
-
NONMEVIPP-PWY
methylerythritol phosphate pathway II
-
-
PWY-7560
methylsalicylate biosynthesis
-
-
PWY18C3-22
mevalonate pathway I (eukaryotes and bacteria)
-
-
PWY-922
mevalonate pathway II (haloarchaea)
-
-
PWY-6174
mevalonate pathway III (Thermoplasma)
-
-
PWY-7524
mevalonate pathway IV (archaea)
-
-
PWY-8125
mixed acid fermentation
-
-
FERMENTATION-PWY
mono-trans, poly-cis decaprenyl phosphate biosynthesis
-
-
PWY-6383
mycolate biosynthesis
-
-
PWYG-321
NADH to fumarate electron transfer
-
-
PWY0-1336
naringenin biosynthesis (engineered)
-
-
PWY-7397
neoabietic acid biosynthesis
-
-
PWY-5413
nicotine degradation IV
-
-
PWY66-201
nicotine degradation V
-
-
PWY66-221
nitrate reduction I (denitrification)
-
-
DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
-
-
PWY-381
nitrate reduction III (dissimilatory)
-
-
PWY0-1321
nitrate reduction IX (dissimilatory)
-
-
PWY0-1581
nitrate reduction VII (denitrification)
-
-
PWY-6748
nitrate reduction VIII (dissimilatory)
-
-
PWY0-1352
nitrate reduction VIIIb (dissimilatory)
-
-
PWY0-1573
nitric oxide biosynthesis II (mammals)
-
-
PWY-4983
nocardicin A biosynthesis
-
-
PWY-7797
noradrenaline and adrenaline degradation
-
-
PWY-6342
nucleoside and nucleotide degradation (archaea)
-
-
PWY-5532
o-diquinones biosynthesis
-
-
PWY-6752
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
-
-
PWY-7388
oleate beta-oxidation
-
-
PWY0-1337
oleate biosynthesis IV (anaerobic)
-
-
PWY-7664
ophthalmate biosynthesis
-
-
PWY-8043
palmitate biosynthesis II (type II fatty acid synthase)
-
-
PWY-5971
palmitate biosynthesis III
-
-
PWY-8279
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
-
-
PWY-6282
palustric acid biosynthesis
-
-
PWY-5414
partial TCA cycle (obligate autotrophs)
-
-
PWY-5913
pectin degradation I
-
-
PWY-7246
pectin degradation II
-
-
PWY-7248
pentachlorophenol degradation
-
-
PCPDEG-PWY
pentose phosphate pathway (oxidative branch) I
-
-
OXIDATIVEPENT-PWY
phaselate biosynthesis
-
-
PWY-6320
phenylethanol biosynthesis
-
-
PWY-5751
phenylpropanoid biosynthesis
-
-
PWY-361
phenylpropanoid biosynthesis, initial reactions
-
-
PWY1F-467
phenylpropanoids methylation (ice plant)
-
-
PWY-7498
phloridzin biosynthesis
-
-
PWY-6515
phospholipases
-
-
LIPASYN-PWY
phospholipid remodeling (phosphatidylethanolamine, yeast)
-
-
PWY-7409
photorespiration I
-
-
PWY-181
photorespiration II
-
-
PWY-8362
photorespiration III
-
-
PWY-8363
photosynthesis light reactions
-
-
PWY-101
phytol degradation
-
-
PWY66-389
plasmalogen biosynthesis I (aerobic)
-
-
PWY-7782
plasmalogen degradation
-
-
PWY-7783
platensimycin biosynthesis
-
-
PWY-8179
polyhydroxybutanoate biosynthesis
-
-
PWY1-3
ppGpp metabolism
-
-
PPGPPMET-PWY
proanthocyanidins biosynthesis from flavanols
-
-
PWY-641
propanoate fermentation to 2-methylbutanoate
-
-
PWY-5109
protective electron sinks in the thylakoid membrane (PSII to PTOX)
-
-
PWY1YI0-7
protein S-nitrosylation and denitrosylation
-
-
PWY-7798
protein ubiquitination
-
-
PWY-7511
purine deoxyribonucleosides salvage
-
-
PWY-7224
pyridoxal 5'-phosphate biosynthesis I
-
-
PYRIDOXSYN-PWY
pyrimidine deoxyribonucleosides salvage
-
-
PWY-7199
pyrimidine deoxyribonucleotide phosphorylation
-
-
PWY-7197
pyrimidine deoxyribonucleotides biosynthesis from CTP
-
-
PWY-7210
pyrimidine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis II
-
-
PWY-7187
pyrimidine deoxyribonucleotides de novo biosynthesis III
-
-
PWY-6545
pyrimidine deoxyribonucleotides de novo biosynthesis IV
-
-
PWY-7198
pyrimidine deoxyribonucleotides dephosphorylation
-
-
PWY-7206
pyruvate fermentation to (S)-lactate
-
-
PWY-5481
pyruvate fermentation to acetone
-
-
PWY-6588
pyruvate fermentation to butanoate
-
-
CENTFERM-PWY
pyruvate fermentation to butanol I
-
-
PWY-6583
pyruvate fermentation to butanol II (engineered)
-
-
PWY-6883
pyruvate fermentation to ethanol I
-
-
PWY-5480
pyruvate fermentation to ethanol II
-
-
PWY-5486
pyruvate fermentation to ethanol III
-
-
PWY-6587
pyruvate fermentation to hexanol (engineered)
-
-
PWY-6863
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
pyruvate fermentation to propanoate I
-
-
P108-PWY
quinate degradation I
-
-
QUINATEDEG-PWY
quinate degradation II
-
-
PWY-6416
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive glycine pathway of autotrophic CO2 fixation
-
-
PWY-8303
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
rosmarinic acid biosynthesis I
-
-
PWY-5048
Rubisco shunt
-
-
PWY-5723
S-adenosyl-L-methionine biosynthesis
-
-
SAM-PWY
S-adenosyl-L-methionine salvage I
-
-
PWY-6151
S-adenosyl-L-methionine salvage II
-
-
PWY-5041
salicortin biosynthesis
-
-
PWY-6763
salidroside biosynthesis
-
-
PWY-6802
salinosporamide A biosynthesis
-
-
PWY-6627
scopoletin biosynthesis
-
-
PWY-6792
serotonin and melatonin biosynthesis
-
-
PWY-6030
serotonin degradation
-
-
PWY-6313
sesamin biosynthesis
-
-
PWY-5469
shikimate degradation II
-
-
PWY-6419
sitosterol degradation to androstenedione
-
-
PWY-6948
sophorosyloxydocosanoate deacetylation
-
-
SOPHOROSYLOXYDOCOSANOATE-DEG-PWY
spermidine biosynthesis I
-
-
BSUBPOLYAMSYN-PWY
spermine biosynthesis
-
-
ARGSPECAT-PWY
stachyose biosynthesis
-
-
PWY-5337
starch biosynthesis
-
-
PWY-622
stearate biosynthesis II (bacteria and plants)
-
-
PWY-5989
stearate biosynthesis IV
-
-
PWY-8280
stellariose and mediose biosynthesis
-
-
PWY-6525
stellatic acid biosynthesis
-
-
PWY-7736
streptorubin B biosynthesis
-
-
PWY1A0-6120
suberin monomers biosynthesis
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
-
-
PWY0-1353
succinate to cytochrome bo oxidase electron transfer
-
-
PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
succinate to plastoquinol oxidase
-
-
PWY1YI0-8
sucrose degradation II (sucrose synthase)
-
-
PWY-3801
sucrose degradation III (sucrose invertase)
-
-
PWY-621
sucrose degradation V (sucrose alpha-glucosidase)
-
-
PWY66-373
sulfide oxidation IV (mitochondria)
-
-
PWY-7927
sulfite oxidation IV (sulfite oxidase)
-
-
PWY-5326
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of fatty acid biosynthesis initiation
-
-
FASYN-INITIAL-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
-
-
PWY4LZ-257
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of glycolysis and the Entner-Doudoroff pathway
-
-
GLYCOLYSIS-E-D
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
superpathway of polyamine biosynthesis II
-
-
POLYAMINSYN3-PWY
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
-
-
PWY0-166
superpathway of scopolin and esculin biosynthesis
-
-
PWY-7186
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
-
-
REDCITCYC
TCA cycle VII (acetate-producers)
-
-
PWY-7254
TCA cycle VIII (Chlamydia)
-
-
TCA-1
teichuronic acid biosynthesis (B. subtilis 168)
-
-
PWY-7820
tetradecanoate biosynthesis (mitochondria)
-
-
PWY66-430
theobromine biosynthesis I
-
-
PWY-5039
thiazole component of thiamine diphosphate biosynthesis I
-
-
PWY-6892
thiazole component of thiamine diphosphate biosynthesis II
-
-
PWY-6891
trans, trans-farnesyl diphosphate biosynthesis
-
-
PWY-5123
trans-caffeate degradation (aerobic)
-
-
PWY-8003
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
-
-
PWY-5410
tunicamycin biosynthesis
-
-
PWY-7821
UDP-alpha-D-glucuronate biosynthesis (from UDP-glucose)
-
-
PWY-7346
umbelliferone biosynthesis
-
-
PWY-6982
UTP and CTP de novo biosynthesis
-
-
PWY-7176
valproate beta-oxidation
-
-
PWY-8182
vanillin biosynthesis I
-
-
PWY-5665
vernolate biosynthesis III
-
-
PWY-6917
viridicatumtoxin biosynthesis
-
-
PWY-7659
volatile benzenoid biosynthesis I (ester formation)
-
-
PWY-4203
volatile esters biosynthesis (during fruit ripening)
-
-
PWY-6801
xanthohumol biosynthesis
-
-
PWY-5135
xanthommatin biosynthesis
-
-
PWY-8249
xylan biosynthesis
-
-
PWY-5800
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
bile acid biosynthesis, neutral pathway
-
-
PWY-6061
cyanate degradation
-
-
CYANCAT-PWY
diterpene phytoalexins precursors biosynthesis
-
-
PWY-2981
methylaspartate cycle
-
-
PWY-6728
suberin monomers biosynthesis
-
-
PWY-1121
Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
ORGANISM
COMMENTARY
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
676469, 677563, 678935, 682335, 682960, 684984, 696998, 706162, 711596, 713231, 716469, 722421, 726337, 726375, 726676, 728054, 731012, 736415, 737645, 739956, 740452, 741860, 743598, 744281, 746504, 747875, 749407, 761292, 762146, 763522, 764781, 765156, 765652
-
-
-
720280, 723486, 736954, 737761, 743424, 749680, 757984, 759302, 759931, 761172, 763054, 765156, 765618
A0A0B4VSM7, A0A2K1XHK8, A0A2K1XRJ2, A0A2K1YWL5, A0A2K2BPI4, A0A2K2BSL2, A9PF83, A9PHY8, B9GJG7, B9GJT3, B9GJZ3, B9HH87, B9HUR3, B9I6S9, B9IJ10, B9IPD3, D2WL48, D2WL57, D2WL73, D2WL74, D2WL75, O65862, O65922
UniProt
11 isozymes
UniProt
five NADP-ME genes, PtNADP-ME1, PtNADP-ME2, PtNADP-ME3, PtNADP-ME4, and PtNADPME5
-
-
trees grown in a field at the University of Victoria, Victoria, British Columbia, Canada
-
-
Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
SOURCE
-
the splice variant hipI-SODC1b is differentially expressed, being clearly expressed in cambial and xylem, but not phloem, regions
additional information
-
all CAD genes expressed, but at different levels. Very low expression of CAD7
-
677563, 682335, 682960, 706162, 726337, 734870, 736954, 740724, 741860, 743598, 749407, 757984, 761292, 765618
-
all CAD genes expressed, but at different levels. CAD13, CAD7,CAD12 are most highly expressed in leaves. CAD9 is preferentially expressed in leaves and xylem
PtGR2 has a significantly high level in leaf indicating that PtGR2 might have a very pivotal role in leaves
isoform PtrDFR2 transcripts are more than twice as abundant as isoform DFR1 in young petioles and 15 times more abundant in old petioles
-
-
Poptr2 and Poptr3 are highly expressed in roots and root tips, respectively
-
-
-
all CAD genes expressed, but at different levels. CAD4 and CAD10 are strongly expressed in xylem, with CAD10 more expressed. CAD4 and CAD10 are 100 times more highly expressed than the other CAD genes. Very low expression of CAD7. CAD9 is preferentially expressed in leaves and xylem
-
most of the pectate lyase-like PL1 genes from subgroups Ia and Ib are highly expressed in xylem
additional information
-
CAD2, CAD3, CAD5, CAD6, CAD11, CAD14, CAD15 show no significant expression differences between tissues
additional information
gene PtSABATH1 is expressed in the root, shoot, leaf and bud tissues, but not expressed in the Populus flower
additional information
-
poplar DQD/SDHs have distinct expression profiles, organ-specific expression of poplar DQD/SDHs, overview
additional information
-
Poptr4 shows a distinct expression pattern with predominant expression in leaves, seedlings, and stomata and some expression in bark and differentiating tissues. Isozyme expression profiles, overview
additional information
tissue expression pattern of enzyme DXR, overview
additional information
-
transcription levels of PtNADP-ME1 in lignified stems and roots are clearly higher than in other tissues, and PtNADP-ME2, PtNADP-ME3, PtNADP-ME4 and PtNADPME5 are broadly expressed in various tissues
additional information
transcripts are found in all tissues examined, but most concentrated in root
Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY
GeneOntology No.
LITERATURE
SOURCE
-
-
additional information
A0A2K1Z156, A0A2K2AW57, A0A2K2BFE0, A0A3N7F4X7, A9P9X7, B9HAE4, B9HR68, B9HUR3, B9MXE8, F8TWD1, U5GAF3
-
A0A2K1Z156, A0A2K2AW57, A0A2K2BFE0, A0A3N7F4X7, A9P9X7, B9HAE4, B9HR68, B9MXE8, D2WL73, D2WL74, D2WL75, F8TWD1, U5GAF3
-
additional information
-
14 of the 15 CAD genes are distributed on duplicated regions
-
additional information
isozymes can occur in chloroplast, mitochondrion, cytosol, and peroxisome. DHA generated in cellular compartments lacking DHAR may be transported to the cytosol for re-reduction through plasma membrane carriers
-
LINKS TO OTHER DATABASES (specific for Populus trichocarpa)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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