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Information on Organism Pedobacter heparinus

ATCC 13125; CCUG 12810; CIP 104194; CIP 105498; culture-collection:NRRL:B:14731; Cytophaga heparina (Payza and Korn 1956) Christensen 1980; Cytophaga heparina; DSM 2366; Flavobacterium heparinum Payza and Korn 1956 (Approved Lists 1980); Flavobacterium heparinum; IFO 12017; JCM 7457; LMG 10339; LMG:10339; LMG 4024; LMG:4024; NBRC 12017; NCIB 9290; NCIB:9290; NCIMB 9290; NRRL B-14731; Pedobacter heparinus (Payza and Korn 1956) Steyn et al. 1998 emend. Zhou et al. 2012; Pedobacter heparinus; Sphingobacterium heparinum (Payza and Korn 1956) Takeuchi and Yokota 1993; Sphingobacterium heparinum; Pedobacter heparinus (Payza and Korn 1956) Steyn et al. 1998;

Word Map for Organism Pedobacter heparinus

Pedobacter heparinus
lyases
heparinase
disaccharide
4.2.2.7
heparan
chondroitin
glycosaminoglycans
chondroitinase
proteoglycans
sulfatases
dermatan
glycuronidase
aurescens
exolytic
antithrombin
glycosaminoglycan-degrading
iduronic
heparitin
heparin-like
mucopolysaccharide
n-sulfated

TaxTree of Organism Pedobacter heparinus

Condensed Tree View

cellular organisms

can be found in Brenda

BRENDA pathways

(superkingdom)

can be found in Brenda

(clade)

Bacteroidetes/Chlorobi group can be found in Brenda

can be found in Brenda

BRENDA pathways

(clade)

Bacteroidetes can be found in Brenda

can be found in Brenda

BRENDA pathways

(phylum)

Sphingobacteriia can be found in Brenda

can be found in Brenda

BRENDA pathways

(class)

Sphingobacteriales can be found in Brenda

can be found in Brenda

BRENDA pathways

(order)

Sphingobacteriaceae can be found in Brenda

can be found in Brenda

BRENDA pathways

(family)

Pedobacter can be found in Brenda

can be found in Brenda

BRENDA pathways

(genus)

Pedobacter heparinus

can be found in Brenda

BRENDA pathways

(species)

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4-hydroxy-2-nonenal detoxification

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PWY-7112

5-oxo-L-proline metabolism

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PWY-7942

allantoin degradation

allantoin degradation

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allantoin degradation to glyoxylate I

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PWY-5694

allantoin degradation to glyoxylate III

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PWY-5705

Amino sugar and nucleotide sugar metabolism

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Arginine and proline metabolism

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Ascorbate and aldarate metabolism

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beta-(1,4)-mannan degradation

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PWY-7456

beta-D-glucuronide and D-glucuronate degradation

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PWY-7247

Biosynthesis of secondary metabolites

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camalexin biosynthesis

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CAMALEXIN-SYN

chondroitin sulfate degradation I (bacterial)

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PWY-6572

creatine phosphate biosynthesis

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PWY-6158

D-galacturonate degradation I

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GALACTUROCAT-PWY

degradation of sugar acids

degradation of sugar acids

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dermatan sulfate degradation I (bacterial)

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PWY-7646

Drug metabolism - cytochrome P450

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Drug metabolism - other enzymes

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ethanol degradation IV

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PWY66-162

Flavone and flavonol biosynthesis

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fructan degradation

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PWY-862

Fructose and mannose metabolism

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gellan degradation

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PWY-6827

gliotoxin biosynthesis

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PWY-7533

Glutathione metabolism

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glutathione metabolism

glutathione metabolism

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glutathione-mediated detoxification I

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PWY-4061

glutathione-mediated detoxification II

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PWY-6842

Glycerolipid metabolism

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Glycosaminoglycan degradation

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Glyoxylate and dicarboxylate metabolism

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heparan sulfate degradation

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PWY-7651

heparin degradation

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PWY-7644

hyaluronan degradation

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PWY-7645

indole glucosinolate activation (intact plant cell)

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PWYQT-4477

L-leucine degradation I

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LEU-DEG2-PWY

leucine metabolism

leucine metabolism

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luteolin triglucuronide degradation

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PWY-7445

Metabolic pathways

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Metabolism of xenobiotics by cytochrome P450

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methanol oxidation to formaldehyde IV

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PWY-5506

N-acetylneuraminate and N-acetylmannosamine degradation II

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PWY-7581

nocardicin A biosynthesis

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PWY-7797

non-pathway related

non-pathway related

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Other glycan degradation

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pectin degradation II

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PWY-7248

pentachlorophenol degradation

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PCPDEG-PWY

Pentose and glucuronate interconversions

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Porphyrin and chlorophyll metabolism

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Purine metabolism

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reactive oxygen species degradation

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DETOX1-PWY-1

Sphingolipid metabolism

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Steroid hormone biosynthesis

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sulfated glycosaminoglycan metabolism

sulfated glycosaminoglycan metabolism

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superoxide radicals degradation

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DETOX1-PWY

triacylglycerol degradation

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LIPAS-PWY

Tryptophan metabolism

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Valine, leucine and isoleucine degradation

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Pedobacter heparinus

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Pedobacter heparinus

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optimization of enzyme production, simple carbon sources, including sucrose, lactose, maltose, and complex carbon sources such as starch and cellulose are able to support growth of the organism, but enzyme can be produced only in the presence of maltose, sorbitol, mannitol, arabinose, and mannose. Phosphate inhibits enzyme production and cell growth, while heparin inhibits cell growth but is required for enzyme induction, overview. Heparinase production in optimized medium is highest, i.e., 75.4 units, when the pH of the medium is kept at pH 6.5, inoculum size of 0.5-1.0% of spore suspension, and for an incubation temperature of 30°C. Growth profile, heparin utilization, and heparinase production in optimized medium, overview

Manually annotated by BRENDA team

commercial preparation

Pedobacter heparinus

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Manually annotated by BRENDA team

additional information

Pedobacter heparinus

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propagated in bovine lung microvascular endothelial cells

Manually annotated by BRENDA team

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Pedobacter heparinus

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5977, 170832, 288765

Manually annotated by BRENDA team

Pedobacter heparinus

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Manually annotated by BRENDA team

Pedobacter heparinus

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Manually annotated by BRENDA team

Pedobacter heparinus

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Manually annotated by BRENDA team

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NCBI: Taxonomy, PubMed, Genome

SILVA: 16S/18S rRNA, 23S/28S rRNA

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Release 2023.1 (January 2023)