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Information on Organism Herbaspirillum seropedicae

Synonyms:
ATCC 35892; CCUG 24564; DSM 6445; Herbaspirillum seropedicae Baldani et al. 1986 emend. Baldani et al. 1996; Herbaspirillum seropedicae; Herbaspirillum seropedicense; Herbispirillum seropedicense; JCM 21448; LMG 6513; LMG:6513; NBRC 102524; strain Z67;
Word Map for Organism Herbaspirillum seropedicae
TaxTree of Organism Herbaspirillum seropedicae
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Betaproteobacteria can be found in Brenda BRENDA pathways(class)
Burkholderiales can be found in Brenda BRENDA pathways(order)
Oxalobacteraceae can be found in Brenda BRENDA pathways(family)
Herbaspirillum can be found in Brenda BRENDA pathways(genus)
Herbaspirillum seropedicae can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
2'-deoxymugineic acid phytosiderophore biosynthesis
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PWY-5912
2,2'-dihydroxybiphenyl degradation
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PWY-7009
2,3-dihydroxybenzoate degradation
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PWY-7480
2-methylcitrate cycle I
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PWY0-42
2-methylcitrate cycle II
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PWY-5747
3-chlorocatechol degradation III (meta pathway)
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PWY-6214
3-methylthiopropanoate biosynthesis
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PWY-5389
4-amino-3-hydroxybenzoate degradation
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PWY-7006
4-aminobutanoate degradation V
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PWY-5022
4-chloronitrobenzene degradation
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PWY-5645
4-hydroxy-2(1H)-quinolone biosynthesis
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PWY-6661
4-hydroxy-2-nonenal detoxification
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PWY-7112
4-hydroxyphenylacetate degradation
5'-deoxyadenosine degradation II
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PWY-8131
acridone alkaloid biosynthesis
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PWY-5958
acrylonitrile degradation I
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PWY-7308
aerobic toluene degradation
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alanine metabolism
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Alanine, aspartate and glutamate metabolism
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allantoin degradation
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Amino sugar and nucleotide sugar metabolism
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Aminobenzoate degradation
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ammonia assimilation cycle I
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PWY-6963
ammonia assimilation cycle II
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PWY-6964
ammonia assimilation cycle III
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AMMASSIM-PWY
ammonia oxidation II (anaerobic)
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P303-PWY
Arginine and proline metabolism
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Arginine biosynthesis
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arginine metabolism
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Ascorbate and aldarate metabolism
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ATP biosynthesis
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PWY-7980
avenanthramide biosynthesis
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PWY-8157
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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PWY-6444
Benzoate degradation
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beta-D-glucuronide and D-glucuronate degradation
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PWY-7247
Biosynthesis of secondary metabolites
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Butanoate metabolism
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Calvin-Benson-Bassham cycle
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CALVIN-PWY
camalexin biosynthesis
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CAMALEXIN-SYN
canavanine degradation
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PWY-31
Carbon fixation in photosynthetic organisms
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catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
Chloroalkane and chloroalkene degradation
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cinnamoyl-CoA biosynthesis
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PWY-6457
Cysteine and methionine metabolism
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cytosolic NADPH production (yeast)
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PWY-7268
d-xylose degradation
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D-xylose degradation V
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PWY-8020
degradation of aromatic, nitrogen containing compounds
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degradation of pentoses
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degradation of sugar acids
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denitrification
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diethylphosphate degradation
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PWY-5491
Dioxin degradation
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Drug metabolism - cytochrome P450
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Drug metabolism - other enzymes
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Entner Doudoroff pathway
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Entner-Doudoroff pathway I
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PWY-8004
ephedrine biosynthesis
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PWY-5883
ethene biosynthesis I (plants)
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ETHYL-PWY
ethene biosynthesis IV (engineered)
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PWY-7126
Flavone and flavonol biosynthesis
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Folate biosynthesis
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folate transformations I
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PWY-2201
formaldehyde oxidation I
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RUMP-PWY
Galactose metabolism
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gliotoxin biosynthesis
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PWY-7533
glutamate and glutamine metabolism
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Glutathione metabolism
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glutathione metabolism
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glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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PWY-6842
Glycine, serine and threonine metabolism
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Glycosaminoglycan degradation
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Glycosphingolipid biosynthesis - ganglio series
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Glyoxylate and dicarboxylate metabolism
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heterolactic fermentation
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P122-PWY
IAA biosynthesis
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indole glucosinolate activation (intact plant cell)
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PWYQT-4477
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis III (bacteria)
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PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
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PWY-5025
indole-3-acetate biosynthesis VI (bacteria)
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TRPIAACAT-PWY
L-alanine degradation II (to D-lactate)
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ALACAT2-PWY
L-arabinose degradation III
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PWY-5517
L-arginine degradation I (arginase pathway)
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ARGASEDEG-PWY
L-arginine degradation VI (arginase 2 pathway)
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ARG-PRO-PWY
L-arginine degradation VII (arginase 3 pathway)
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ARG-GLU-PWY
L-arginine degradation X (arginine monooxygenase pathway)
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ARGDEG-V-PWY
L-aspartate degradation II (aerobic)
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PWY-8291
L-aspartate degradation III (anaerobic)
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PWY-8294
L-citrulline biosynthesis
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CITRULBIO-PWY
L-glutamate degradation I
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GLUTAMATE-DEG1-PWY
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-glutamate degradation XI (reductive Stickland reaction)
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PWY-8190
L-glutamine biosynthesis I
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GLNSYN-PWY
L-lyxonate degradation
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PWY-7516
L-methionine degradation I (to L-homocysteine)
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METHIONINE-DEG1-PWY
L-Ndelta-acetylornithine biosynthesis
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PWY-6922
L-tryptophan biosynthesis
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TRPSYN-PWY
L-tryptophan degradation VIII (to tryptophol)
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PWY-5081
luteolin triglucuronide degradation
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PWY-7445
Metabolic pathways
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metabolism of disaccharids
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Metabolism of xenobiotics by cytochrome P450
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methionine metabolism
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methylaspartate cycle
Microbial metabolism in diverse environments
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NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
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PWY-5653
NAD de novo biosynthesis I
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PYRIDNUCSYN-PWY
NAD de novo biosynthesis III
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PWY-8352
NAD de novo biosynthesis IV (anaerobic)
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PWY-8277
NAD metabolism
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NAD salvage (plants)
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PWY-5381
NAD salvage pathway I (PNC VI cycle)
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PYRIDNUCSAL-PWY
NAD salvage pathway II (PNC IV cycle)
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PWY-7761
NAD salvage pathway V (PNC V cycle)
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PWY3O-4107
Nicotinate and nicotinamide metabolism
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nitrate assimilation
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nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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PWY-381
nitrate reduction VII (denitrification)
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PWY-6748
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
nitrogen fixation I (ferredoxin)
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N2FIX-PWY
nitrogen fixation II (flavodoxin)
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PWY-7576
Nitrogen metabolism
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nucleoside and nucleotide degradation (archaea)
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PWY-5532
One carbon pool by folate
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orthanilate degradation
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2ASDEG-PWY
Other glycan degradation
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Oxidative phosphorylation
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oxidative phosphorylation
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pentachlorophenol degradation
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PCPDEG-PWY
Pentose and glucuronate interconversions
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Pentose phosphate pathway
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pentose phosphate pathway
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pentose phosphate pathway (oxidative branch) I
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OXIDATIVEPENT-PWY
Phenazine biosynthesis
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phenol degradation
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Phenylalanine metabolism
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Phenylalanine, tyrosine and tryptophan biosynthesis
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Phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis, initial reactions
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PWY1F-467
phosphate acquisition
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PWY-6348
Photosynthesis
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photosynthesis
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polyhydroxybutanoate biosynthesis
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PWY1-3
polyhydroxydecanoate biosynthesis
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PWY-6657
Porphyrin and chlorophyll metabolism
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Propanoate metabolism
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propionate fermentation
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protocatechuate degradation III (para-cleavage pathway)
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PWY-6336
Purine metabolism
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purine metabolism
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putrescine biosynthesis III
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PWY-46
Riboflavin metabolism
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rosmarinic acid biosynthesis I
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PWY-5048
Rubisco shunt
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PWY-5723
S-adenosyl-L-methionine biosynthesis
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SAM-PWY
S-adenosyl-L-methionine salvage I
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PWY-6151
S-adenosyl-L-methionine salvage II
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PWY-5041
S-methyl-5'-thioadenosine degradation I
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PWY-6754
Sphingolipid metabolism
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Starch and sucrose metabolism
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Styrene degradation
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suberin monomers biosynthesis
sulfopterin metabolism
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sulfoquinovose degradation I
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PWY-7446
sulfoquinovose degradation V
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PWY-8349
superpathway of glycolysis and the Entner-Doudoroff pathway
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GLYCOLYSIS-E-D
Taurine and hypotaurine metabolism
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tetrahydrofolate metabolism
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Thiamine metabolism
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Tryptophan metabolism
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tryptophan metabolism
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Tyrosine metabolism
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urate conversion to allantoin I
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PWY-5691
urate conversion to allantoin II
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PWY-7394
urate conversion to allantoin III
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PWY-7849
urea cycle
vitamin B1 metabolism
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Xylene degradation
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xyloglucan degradation II (exoglucanase)
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PWY-6807
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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LINKS TO OTHER DATABASES (specific for Herbaspirillum seropedicae)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA