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Information on Organism Desulfovibrio desulfuricans

TaxTree of Organism Desulfovibrio desulfuricans
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(aminomethyl)phosphonate degradation
-
-
PWY-7805
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
(S)-propane-1,2-diol degradation
-
-
PWY-7013
1,3-propanediol biosynthesis (engineered)
-
-
PWY-7385
2'-deoxymugineic acid phytosiderophore biosynthesis
-
-
PWY-5912
2-deoxy-D-glucose 6-phosphate degradation
-
-
PWY-8121
2-oxoglutarate decarboxylation to succinyl-CoA
-
-
PWY-5084
2-oxoisovalerate decarboxylation to isobutanoyl-CoA
-
-
PWY-5046
3,6-anhydro-alpha-L-galactopyranose degradation
-
-
PWY-7562
3-hydroxypropanoate cycle
-
-
PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
-
-
PWY-5789
3-methylbutanol biosynthesis (engineered)
-
-
PWY-6871
4-aminobutanoate degradation V
-
-
PWY-5022
4-deoxy-L-threo-hex-4-enopyranuronate degradation
-
-
PWY-6507
acetaldehyde biosynthesis I
-
-
PWY-6333
acetate and ATP formation from acetyl-CoA I
-
-
PWY0-1312
acetate and ATP formation from acetyl-CoA III
-
-
PWY-8328
acetate conversion to acetyl-CoA
-
-
PWY0-1313
acetate fermentation
-
-
acetyl CoA biosynthesis
-
-
acetylene degradation (anaerobic)
-
-
P161-PWY
adenosine nucleotides degradation I
-
-
PWY-6596
adenosine ribonucleotides de novo biosynthesis
-
-
PWY-7219
adlupulone and adhumulone biosynthesis
-
-
PWY-7857
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
-
PWY-7279
aerobic respiration III (alternative oxidase pathway)
-
-
PWY-4302
alanine metabolism
-
-
Alanine, aspartate and glutamate metabolism
-
-
alkylnitronates degradation
-
-
PWY-723
alpha-Linolenic acid metabolism
-
-
Aminoacyl-tRNA biosynthesis
-
-
ammonia oxidation II (anaerobic)
-
-
P303-PWY
anaerobic energy metabolism (invertebrates, mitochondrial)
-
-
PWY-7384
Arginine and proline metabolism
-
-
Arginine biosynthesis
-
-
arsenate detoxification IV (mycothiol)
-
-
PWY-6421
arsenite to oxygen electron transfer (via azurin)
-
-
PWY-7429
assimilatory sulfate reduction I
-
-
SO4ASSIM-PWY
assimilatory sulfate reduction II
-
-
SULFMETII-PWY
assimilatory sulfate reduction III
-
-
PWY-6683
assimilatory sulfate reduction IV
-
-
PWY1ZNC-1
ATP biosynthesis
-
-
PWY-7980
Atrazine degradation
-
-
bacterial bioluminescence
-
-
PWY-7723
baicalein degradation (hydrogen peroxide detoxification)
-
-
PWY-7214
beta-Alanine metabolism
-
-
betanidin degradation
-
-
PWY-5461
Bifidobacterium shunt
-
-
P124-PWY
Biosynthesis of secondary metabolites
-
-
Butanoate metabolism
-
-
butanol and isobutanol biosynthesis (engineered)
-
-
PWY-7396
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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-
PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
-
-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
Calvin-Benson-Bassham cycle
-
-
CALVIN-PWY
Carbon fixation in photosynthetic organisms
-
-
Carbon fixation pathways in prokaryotes
-
-
carbon tetrachloride degradation II
-
-
PWY-5372
ceramide biosynthesis
-
-
ceramide de novo biosynthesis
-
-
PWY3DJ-12
chitin deacetylation
-
-
PWY-7118
Chloroalkane and chloroalkene degradation
-
-
choline degradation III
-
-
PWY-7167
cis-geranyl-CoA degradation
-
-
PWY-6672
Citrate cycle (TCA cycle)
-
-
citric acid cycle
-
-
CO2 fixation into oxaloacetate (anaplerotic)
-
-
PWYQT-4429
coenzyme B/coenzyme M regeneration I (methanophenazine-dependent)
-
-
PWY-5207
coenzyme M biosynthesis
-
-
colupulone and cohumulone biosynthesis
-
-
PWY-5133
cyanate degradation
Cyanoamino acid metabolism
-
-
cyclic electron flow
-
-
PWY-8270
Cysteine and methionine metabolism
-
-
cytosolic NADPH production (yeast)
-
-
PWY-7268
D-fructuronate degradation
-
-
PWY-7242
D-galacturonate degradation I
-
-
GALACTUROCAT-PWY
D-glucosaminate degradation
-
-
PWY-7310
denitrification
-
-
dissimilatory sulfate reduction I (to hydrogen sufide))
-
-
DISSULFRED-PWY
Drug metabolism - cytochrome P450
-
-
dTMP de novo biosynthesis (mitochondrial)
-
-
PWY66-385
Entner Doudoroff pathway
-
-
Entner-Doudoroff pathway I
-
-
PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
-
-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
-
-
PWY-2221
Entner-Doudoroff shunt
-
-
ENTNER-DOUDOROFF-PWY
ethanol degradation I
-
-
ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
-
-
PWY66-21
ethanol degradation III
-
-
PWY66-161
ethanol degradation IV
-
-
PWY66-162
ethanol fermentation
-
-
ethanolamine utilization
-
-
PWY0-1477
ethene biosynthesis III (microbes)
-
-
PWY-6854
ethene biosynthesis IV (engineered)
-
-
PWY-7126
ethene biosynthesis V (engineered)
-
-
PWY-7124
Ethylbenzene degradation
-
-
Fatty acid degradation
-
-
Fe(II) oxidation
-
-
PWY-6692
folate polyglutamylation
folate transformations I
-
-
PWY-2201
folate transformations II (plants)
-
-
PWY-3841
folate transformations III (E. coli)
-
-
1CMET2-PWY
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
-
-
PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
-
-
P185-PWY
formaldehyde oxidation I
-
-
RUMP-PWY
formate oxidation to CO2
-
-
PWY-1881
formate to dimethyl sulfoxide electron transfer
-
-
PWY0-1356
formate to nitrite electron transfer
-
-
PWY0-1585
fructose 2,6-bisphosphate biosynthesis
-
-
PWY66-423
Fructose and mannose metabolism
-
-
Galactose metabolism
-
-
gallate degradation III (anaerobic)
-
-
P3-PWY
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
-
PWY-6142
gluconeogenesis III
-
-
PWY66-399
glucose degradation (oxidative)
-
-
DHGLUCONATE-PYR-CAT-PWY
glutamate and glutamine metabolism
-
-
Glutathione metabolism
-
-
glycerol-3-phosphate to fumarate electron transfer
-
-
PWY0-1582
Glycerolipid metabolism
-
-
glycine betaine degradation I
-
-
PWY-3661
glycine betaine degradation II (mammalian)
-
-
PWY-3661-1
glycine betaine degradation III
-
-
PWY-8325
glycine biosynthesis I
-
-
GLYSYN-PWY
glycine biosynthesis II
-
-
GLYCINE-SYN2-PWY
glycine cleavage
-
-
GLYCLEAV-PWY
glycine degradation (reductive Stickland reaction)
-
-
PWY-8015
glycine metabolism
-
-
Glycine, serine and threonine metabolism
-
-
glycogen degradation I
-
-
GLYCOCAT-PWY
glycogen metabolism
-
-
glycolysis
-
-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
-
-
PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
glycolysis V (Pyrococcus)
-
-
P341-PWY
Glycosaminoglycan degradation
-
-
Glycosphingolipid biosynthesis - ganglio series
-
-
Glycosphingolipid biosynthesis - globo and isoglobo series
-
-
Glyoxylate and dicarboxylate metabolism
-
-
glyoxylate assimilation
-
-
PWY-5744
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
glyphosate degradation III
-
-
PWY-7807
heme b biosynthesis III (from siroheme)
-
-
PWY-7552
heme d1 biosynthesis
-
-
PWY-7554
heme metabolism
-
-
heterolactic fermentation
-
-
P122-PWY
hydrogen oxidation I (aerobic)
-
-
P283-PWY
hydrogen oxidation II (aerobic, NAD)
-
-
PWY-5382
hydrogen production
-
-
hydrogen production I
-
-
PWY-6744
hydrogen production II
-
-
PWY-6758
hydrogen production III
-
-
PWY-6759
hydrogen production VI
-
-
PWY-6780
hydrogen production VIII
-
-
PWY-6785
hydrogen to dimethyl sulfoxide electron transfer
-
-
PWY0-1577
hydrogen to fumarate electron transfer
-
-
PWY0-1576
hypotaurine degradation
-
-
PWY-7387
incomplete reductive TCA cycle
-
-
P42-PWY
iron reduction and absorption
-
-
PWY-5934
isopropanol biosynthesis (engineered)
-
-
PWY-6876
justicidin B biosynthesis
-
-
PWY-6824
L-alanine degradation II (to D-lactate)
-
-
ALACAT2-PWY
L-alanine degradation IV
-
-
PWY1-2
L-alanine degradation V (oxidative Stickland reaction)
-
-
PWY-8189
L-arginine degradation VI (arginase 2 pathway)
-
-
ARG-PRO-PWY
L-arginine degradation XIII (reductive Stickland reaction)
-
-
PWY-8187
L-glutamate degradation I
-
-
GLUTAMATE-DEG1-PWY
L-glutamate degradation V (via hydroxyglutarate)
-
-
P162-PWY
L-glutamate degradation VII (to butanoate)
-
-
GLUDEG-II-PWY
L-glutamate degradation XI (reductive Stickland reaction)
-
-
PWY-8190
L-histidine degradation V
-
-
PWY-5031
L-isoleucine biosynthesis V
-
-
PWY-5108
L-isoleucine degradation II
-
-
PWY-5078
L-lactaldehyde degradation
-
-
L-leucine biosynthesis
-
-
LEUSYN-PWY
L-leucine degradation III
-
-
PWY-5076
L-lysine fermentation to acetate and butanoate
-
-
P163-PWY
L-methionine degradation I (to L-homocysteine)
-
-
METHIONINE-DEG1-PWY
L-methionine degradation III
-
-
PWY-5082
L-nicotianamine biosynthesis
-
-
PWY-5957
L-phenylalanine degradation III
-
-
PWY-5079
L-proline biosynthesis I (from L-glutamate)
-
-
PROSYN-PWY
L-proline biosynthesis III (from L-ornithine)
-
-
PWY-3341
L-serine biosynthesis I
-
-
SERSYN-PWY
L-threonine degradation I
-
-
PWY-5437
L-tryptophan degradation V (side chain pathway)
-
-
PWY-3162
L-tyrosine degradation III
-
-
PWY3O-4108
L-valine degradation II
-
-
PWY-5057
lactate fermentation
-
-
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales)
-
-
PWY-8377
leucine metabolism
-
-
lipid metabolism
-
-
lupulone and humulone biosynthesis
-
-
PWY-5132
luteolin triglucuronide degradation
-
-
PWY-7445
Lysine degradation
-
-
lysine metabolism
-
-
matairesinol biosynthesis
-
-
PWY-5466
melibiose degradation
-
-
PWY0-1301
Metabolic pathways
-
-
metabolism of disaccharids
-
-
Metabolism of xenobiotics by cytochrome P450
-
-
Methane metabolism
-
-
methanogenesis from acetate
-
-
METH-ACETATE-PWY
methanol oxidation to carbon dioxide
-
-
PWY-7616
methanol oxidation to formaldehyde IV
-
-
PWY-5506
methionine metabolism
-
-
methylamine degradation I
-
-
PWY-6967
methylaspartate cycle
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
-
-
FERMENTATION-PWY
Monobactam biosynthesis
-
-
N-Glycan biosynthesis
-
-
NAD metabolism
-
-
NAD(P)/NADPH interconversion
-
-
PWY-5083
NADH to cytochrome bd oxidase electron transfer I
-
-
PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
-
-
PWY0-1335
NADH to dimethyl sulfoxide electron transfer
-
-
PWY0-1348
NADH to fumarate electron transfer
-
-
PWY0-1336
NADPH to cytochrome c oxidase via plastocyanin
-
-
PWY-8271
Naphthalene degradation
-
-
naphthalene degradation (aerobic)
-
-
PWY-5427
Nicotinate and nicotinamide metabolism
-
-
nitrate assimilation
-
-
nitrate reduction I (denitrification)
-
-
DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
-
-
PWY-381
nitrate reduction III (dissimilatory)
-
-
PWY0-1321
nitrate reduction IV (dissimilatory)
-
-
PWY-5674
nitrate reduction IX (dissimilatory)
-
-
PWY0-1581
nitrate reduction V (assimilatory)
-
-
PWY-5675
nitrate reduction VI (assimilatory)
-
-
PWY490-3
nitrate reduction VII (denitrification)
-
-
PWY-6748
nitrate reduction VIII (dissimilatory)
-
-
PWY0-1352
nitrate reduction VIIIb (dissimilatory)
-
-
PWY0-1573
nitrate reduction X (dissimilatory, periplasmic)
-
-
PWY0-1584
nitrifier denitrification
-
-
PWY-7084
nitrite-dependent anaerobic methane oxidation
-
-
PWY-6523
nitrogen fixation I (ferredoxin)
-
-
N2FIX-PWY
Nitrogen metabolism
-
-
nitrogen remobilization from senescing leaves
-
-
PWY-6549
Nitrotoluene degradation
-
-
non-pathway related
-
-
noradrenaline and adrenaline degradation
-
-
PWY-6342
One carbon pool by folate
-
-
ornithine metabolism
-
-
Other glycan degradation
-
-
oxalate degradation III
-
-
PWY-6696
oxalate degradation VI
-
-
PWY-7985
oxidative decarboxylation of pyruvate
-
-
Oxidative phosphorylation
-
-
oxidative phosphorylation
-
-
Pantothenate and CoA biosynthesis
-
-
pantothenate biosynthesis
-
-
partial TCA cycle (obligate autotrophs)
-
-
PWY-5913
Penicillin and cephalosporin biosynthesis
-
-
Pentose phosphate pathway
-
-
pentose phosphate pathway
-
-
pentose phosphate pathway (non-oxidative branch) II
-
-
PWY-8178
pentose phosphate pathway (oxidative branch) I
-
-
OXIDATIVEPENT-PWY
phenylalanine metabolism
-
-
phenylethanol biosynthesis
-
-
PWY-5751
Phenylpropanoid biosynthesis
-
-
phosphatidylethanolamine bioynthesis
-
-
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
photorespiration I
-
-
PWY-181
photorespiration II
-
-
PWY-8362
photorespiration III
-
-
PWY-8363
Photosynthesis
-
-
photosynthesis
-
-
photosynthesis light reactions
-
-
PWY-101
phytol degradation
-
-
PWY66-389
Polycyclic aromatic hydrocarbon degradation
-
-
Porphyrin and chlorophyll metabolism
-
-
proline metabolism
-
-
Propanoate metabolism
-
-
propanol degradation
-
-
propionate fermentation
-
-
protein N-glycosylation (bacterial)
-
-
PWY-7031
protein N-glycosylation initial phase (eukaryotic)
-
-
MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
Purine metabolism
-
-
purine metabolism
-
-
purine nucleobases degradation I (anaerobic)
-
-
P164-PWY
purine nucleobases degradation II (anaerobic)
-
-
PWY-5497
pyruvate decarboxylation to acetyl CoA I
-
-
PYRUVDEHYD-PWY
pyruvate decarboxylation to acetyl CoA III
-
-
PWY-8275
pyruvate fermentation to (S)-lactate
-
-
PWY-5481
pyruvate fermentation to acetate I
-
-
P142-PWY
pyruvate fermentation to acetate II
-
-
PWY-5482
pyruvate fermentation to acetate III
-
-
PWY-5483
pyruvate fermentation to acetate IV
-
-
PWY-5485
pyruvate fermentation to acetate VI
-
-
PWY-5538
pyruvate fermentation to acetate VII
-
-
PWY-5600
pyruvate fermentation to acetone
-
-
PWY-6588
pyruvate fermentation to butanoate
-
-
CENTFERM-PWY
pyruvate fermentation to butanol I
-
-
PWY-6583
pyruvate fermentation to ethanol I
-
-
PWY-5480
pyruvate fermentation to ethanol II
-
-
PWY-5486
pyruvate fermentation to ethanol III
-
-
PWY-6587
pyruvate fermentation to hexanol (engineered)
-
-
PWY-6863
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive acetyl coenzyme A pathway
-
-
reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
-
-
CODH-PWY
reductive glycine pathway of autotrophic CO2 fixation
-
-
PWY-8303
reductive monocarboxylic acid cycle
-
-
PWY-5493
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
Retinol metabolism
-
-
S-adenosyl-L-methionine salvage II
-
-
PWY-5041
salidroside biosynthesis
-
-
PWY-6802
sedoheptulose bisphosphate bypass
-
-
PWY0-1517
selenate reduction
-
-
PWY-6932
Selenocompound metabolism
-
-
serine metabolism
-
-
serotonin degradation
-
-
PWY-6313
serotonin metabolism
-
-
sesamin biosynthesis
-
-
PWY-5469
sphingolipid biosynthesis (plants)
-
-
PWY-5129
Sphingolipid metabolism
-
-
stachyose degradation
-
-
PWY-6527
Starch and sucrose metabolism
-
-
starch degradation
-
-
starch degradation I
-
-
PWY-842
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
-
-
PWY0-1353
succinate to cytochrome bo oxidase electron transfer
-
-
PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
succinate to plastoquinol oxidase
-
-
PWY1YI0-8
sucrose biosynthesis I (from photosynthesis)
-
-
SUCSYN-PWY
sucrose degradation V (sucrose alpha-glucosidase)
-
-
PWY66-373
sulfate activation for sulfonation
-
-
PWY-5340
sulfate reduction
-
-
sulfated glycosaminoglycan metabolism
-
-
sulfide oxidation IV (mitochondria)
-
-
PWY-7927
sulfite oxidation II
-
-
PWY-5279
sulfite oxidation III
-
-
PWY-5278
sulfoacetaldehyde degradation IV
-
-
PWY-8062
Sulfur metabolism
-
-
sulfur reduction I
-
-
PWY-5332
sulfur reduction II (via polysulfide)
-
-
PWY-5364
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
-
-
PWY4LZ-257
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of glycolysis and the Entner-Doudoroff pathway
-
-
GLYCOLYSIS-E-D
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
Taurine and hypotaurine metabolism
-
-
taurine degradation I
-
-
PWY-1263
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
-
-
REDCITCYC
TCA cycle VII (acetate-producers)
-
-
PWY-7254
TCA cycle VIII (Chlamydia)
-
-
TCA-1
Thiamine metabolism
-
-
thioredoxin pathway
-
-
THIOREDOX-PWY
thiosulfate disproportionation IV (rhodanese)
-
-
PWY-5350
threonine metabolism
-
-
tRNA charging
-
-
TRNA-CHARGING-PWY
Tryptophan metabolism
-
-
Tyrosine metabolism
-
-
tyrosine metabolism
-
-
urea cycle
-
-
urea degradation II
-
-
PWY-5704
valine metabolism
-
-
Valine, leucine and isoleucine biosynthesis
-
-
Valine, leucine and isoleucine degradation
-
-
Various types of N-glycan biosynthesis
-
-
Vitamin B6 metabolism
-
-
xanthommatin biosynthesis
-
-
PWY-8249
xyloglucan degradation II (exoglucanase)
-
-
PWY-6807
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
additional information
-
uranyl acetate or uranyl nitrate as sole electron acceptor is not sufficient for cell growth and is growth-inhibitory at higher concentrations
Manually annotated by BRENDA team
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
LINKS TO OTHER DATABASES (specific for Desulfovibrio desulfuricans)